RNA–Protein interactions for RNA: ENST00000409809.5

COL6A3-206, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 8,916 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-206ENST00000409809 CCDC87Q9NVE4 849 aa13.82□□□□□ -0.2
COL6A3-206ENST00000409809 UBAP1Q9NZ09 502 aa13.82□□□□□ -0.2
COL6A3-206ENST00000409809 PMS1P54277 932 aaKnown RBP13.82□□□□□ -0.2
COL6A3-206ENST00000409809 DAB2P98082 770 aa13.82□□□□□ -0.2
COL6A3-206ENST00000409809 C2orf54Q08AI8 447 aa13.82□□□□□ -0.2
COL6A3-206ENST00000409809 RGS9BPQ6ZS82 235 aa13.82□□□□□ -0.2
COL6A3-206ENST00000409809 FLT4P35916 1363 aa13.82□□□□□ -0.2
COL6A3-206ENST00000409809 CARMIL3Q8ND23 1372 aa13.82□□□□□ -0.2
COL6A3-206ENST00000409809 PRR23AA6NEV1 266 aa13.82□□□□□ -0.2
COL6A3-206ENST00000409809 KHDRBS1Q07666 443 aaKnown RBP eCLIP13.82□□□□□ -0.2
COL6A3-206ENST00000409809 ITIH4Q14624 930 aa13.82□□□□□ -0.2
COL6A3-206ENST00000409809 MCM9Q9NXL9 1143 aa13.82□□□□□ -0.2
COL6A3-206ENST00000409809 MFAP3LO75121 409 aa13.82□□□□□ -0.2
COL6A3-206ENST00000409809 PLA2G4DQ86XP0 818 aa13.82□□□□□ -0.2
COL6A3-206ENST00000409809 LAMC1P11047 1609 aa13.81□□□□□ -0.2
COL6A3-206ENST00000409809 A0A0G2JND7 137 aa13.81□□□□□ -0.2
COL6A3-206ENST00000409809 ZNF233A6NK53 670 aa13.81□□□□□ -0.2
COL6A3-206ENST00000409809 TOM1L1O75674 476 aa13.81□□□□□ -0.2
COL6A3-206ENST00000409809 NDUFA8P51970 172 aa13.81□□□□□ -0.2
COL6A3-206ENST00000409809 MAGOHP61326 146 aaKnown RBP13.81□□□□□ -0.2
COL6A3-206ENST00000409809 KRT26Q7Z3Y9 468 aa13.81□□□□□ -0.2
COL6A3-206ENST00000409809 PTPN22Q9Y2R2 807 aa13.81□□□□□ -0.2
COL6A3-206ENST00000409809 FAM25AB3EWG3 89 aa13.81□□□□□ -0.2
COL6A3-206ENST00000409809 FAM25CB3EWG5 89 aa13.81□□□□□ -0.2
COL6A3-206ENST00000409809 FAM25GB3EWG6 89 aa13.81□□□□□ -0.2
COL6A3-206ENST00000409809 SOX6P35712 828 aa13.81□□□□□ -0.2
COL6A3-206ENST00000409809 H0YC42 278 aa13.81□□□□□ -0.2
COL6A3-206ENST00000409809 ME3Q16798 604 aa13.81□□□□□ -0.2
COL6A3-206ENST00000409809 BBS5Q8N3I7 341 aa13.81□□□□□ -0.2
COL6A3-206ENST00000409809 TRPC7Q9HCX4 862 aa13.81□□□□□ -0.2
COL6A3-206ENST00000409809 PFASO15067 1338 aa13.81□□□□□ -0.2
COL6A3-206ENST00000409809 M0R3G1 203 aa13.81□□□□□ -0.2
COL6A3-206ENST00000409809 VAMP4O75379 141 aa13.81□□□□□ -0.2
COL6A3-206ENST00000409809 WBP4O75554 376 aaKnown RBP13.81□□□□□ -0.2
COL6A3-206ENST00000409809 CLMNQ96JQ2 1002 aa13.81□□□□□ -0.2
COL6A3-206ENST00000409809 CCT8L2Q96SF2 557 aa13.81□□□□□ -0.2
COL6A3-206ENST00000409809 PRPF18Q99633 342 aaKnown RBP13.81□□□□□ -0.2
COL6A3-206ENST00000409809 MXD3Q9BW11 206 aa13.81□□□□□ -0.2
COL6A3-206ENST00000409809 MAST3O60307 1309 aa13.81□□□□□ -0.2
COL6A3-206ENST00000409809 TRMT44Q8IYL2 757 aaKnown RBP13.81□□□□□ -0.2
COL6A3-206ENST00000409809 LZTS3O60299 673 aaPredicted RBP13.81□□□□□ -0.2
COL6A3-206ENST00000409809 ZSCAN20P17040 1043 aaPredicted RBP13.81□□□□□ -0.2
COL6A3-206ENST00000409809 MDH1P40925 334 aaKnown RBP13.81□□□□□ -0.2
COL6A3-206ENST00000409809 CTCFP49711 727 aaPredicted RBP13.81□□□□□ -0.2
COL6A3-206ENST00000409809 TMEM154Q6P9G4 183 aa13.81□□□□□ -0.2
COL6A3-206ENST00000409809 TRPM8Q7Z2W7 1104 aa13.81□□□□□ -0.2
COL6A3-206ENST00000409809 GDAP1Q8TB36 358 aa13.81□□□□□ -0.2
COL6A3-206ENST00000409809 SCG3Q8WXD2 468 aaKnown RBP13.81□□□□□ -0.2
COL6A3-206ENST00000409809 PCDHA13Q9Y5I0 950 aa13.81□□□□□ -0.2
COL6A3-206ENST00000409809 MAP3K13O43283 966 aa13.81□□□□□ -0.2
COL6A3-206ENST00000409809 CLASP2O75122 1294 aaKnown RBP13.81□□□□□ -0.2
COL6A3-206ENST00000409809 RBM41Q96IZ5 413 aaKnown RBP13.81□□□□□ -0.2
COL6A3-206ENST00000409809 KDM4CQ9H3R0 1056 aa13.81□□□□□ -0.2
COL6A3-206ENST00000409809 DNAJC6O75061 913 aa13.8□□□□□ -0.2
COL6A3-206ENST00000409809 DDAH1O94760 285 aa13.8□□□□□ -0.2
COL6A3-206ENST00000409809 HSPA4LO95757 839 aa13.8□□□□□ -0.2
COL6A3-206ENST00000409809 RBL2Q08999 1139 aa13.8□□□□□ -0.2
COL6A3-206ENST00000409809 CEP78Q5JTW2 689 aa13.8□□□□□ -0.2
COL6A3-206ENST00000409809 FTOQ9C0B1 505 aaKnown RBP eCLIP13.8□□□□□ -0.2
COL6A3-206ENST00000409809 NSMCE4AQ9NXX6 385 aa13.8□□□□□ -0.2
COL6A3-206ENST00000409809 CUL4AQ13619 759 aa13.8□□□□□ -0.2
COL6A3-206ENST00000409809 PLEKHA4Q9H4M7 779 aa13.8□□□□□ -0.2
COL6A3-206ENST00000409809 EML4Q9HC35 981 aaKnown RBP13.8□□□□□ -0.2
COL6A3-206ENST00000409809 SNRKQ9NRH2 765 aa13.8□□□□□ -0.2
COL6A3-206ENST00000409809 ABCE1P61221 599 aaKnown RBP13.8□□□□□ -0.2
COL6A3-206ENST00000409809 GRM1Q13255 1194 aa13.8□□□□□ -0.2
COL6A3-206ENST00000409809 DMP1Q13316 513 aaPredicted RBP13.8□□□□□ -0.2
COL6A3-206ENST00000409809 GAS2L3Q86XJ1 694 aa13.8□□□□□ -0.2
COL6A3-206ENST00000409809 TCOF1Q13428 1488 aaKnown RBP13.8□□□□□ -0.2
COL6A3-206ENST00000409809 ARHGEF10O15013 1369 aa13.8□□□□□ -0.2
COL6A3-206ENST00000409809 OLFML2BQ68BL8 750 aa13.8□□□□□ -0.2
COL6A3-206ENST00000409809 BSDC1Q9NW68 430 aaPredicted RBP13.8□□□□□ -0.2
COL6A3-206ENST00000409809 BACH1O14867 736 aa13.8□□□□□ -0.2
COL6A3-206ENST00000409809 ICA1Q05084 483 aa13.8□□□□□ -0.2
COL6A3-206ENST00000409809 TMEM245Q9H330 911 aa13.8□□□□□ -0.2
COL6A3-206ENST00000409809 MAPK8IP1Q9UQF2 711 aa13.8□□□□□ -0.2
COL6A3-206ENST00000409809 PGM1P36871 562 aa13.8□□□□□ -0.2
COL6A3-206ENST00000409809 ACTN3Q08043 901 aaPredicted RBP13.8□□□□□ -0.2
COL6A3-206ENST00000409809 CCDC85AQ96PX6 553 aaPredicted RBP13.8□□□□□ -0.2
COL6A3-206ENST00000409809 COG4Q9H9E3 785 aa13.8□□□□□ -0.2
COL6A3-206ENST00000409809 RHOBTB1O94844 696 aa13.8□□□□□ -0.2
COL6A3-206ENST00000409809 PURAQ00577 322 aaKnown RBP13.8□□□□□ -0.2
COL6A3-206ENST00000409809 TMTC4Q5T4D3 741 aa13.8□□□□□ -0.2
COL6A3-206ENST00000409809 SPATA21Q7Z572 469 aa13.8□□□□□ -0.2
COL6A3-206ENST00000409809 C14orf93Q9H972 538 aaKnown RBP13.8□□□□□ -0.2
COL6A3-206ENST00000409809 ARHGEF10LQ9HCE6 1279 aa13.8□□□□□ -0.2
COL6A3-206ENST00000409809 MED7O43513 233 aa13.79□□□□□ -0.2
COL6A3-206ENST00000409809 PLCH2O75038 1416 aa13.79□□□□□ -0.2
COL6A3-206ENST00000409809 ZRANB2O95218 330 aaKnown RBP eCLIP13.79□□□□□ -0.2
COL6A3-206ENST00000409809 USP14P54578 494 aa13.79□□□□□ -0.2
COL6A3-206ENST00000409809 PUM3Q15397 648 aaKnown RBP13.79□□□□□ -0.2
COL6A3-206ENST00000409809 MIGA1Q8NAN2 632 aa13.79□□□□□ -0.2
COL6A3-206ENST00000409809 S100A9P06702 114 aaKnown RBP13.79□□□□□ -0.2
COL6A3-206ENST00000409809 ARFIP2P53365 341 aa13.79□□□□□ -0.2
COL6A3-206ENST00000409809 EFTUD2Q15029 972 aaKnown RBP eCLIP13.79□□□□□ -0.2
COL6A3-206ENST00000409809 CEP95Q96GE4 821 aa13.79□□□□□ -0.2
COL6A3-206ENST00000409809 FAM161BQ96MY7 647 aa13.79□□□□□ -0.2
COL6A3-206ENST00000409809 A2MP01023 1474 aa13.79□□□□□ -0.2
COL6A3-206ENST00000409809 MAPK4P31152 587 aa13.79□□□□□ -0.2
COL6A3-206ENST00000409809 PASD1Q8IV76 773 aa13.79□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 48.7 ms