RNA–Protein interactions for RNA: ENST00000409766.7

USP39-204, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,033 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-204ENST00000409766 RIT2Q99578 217 aa22.23■■□□□ 1.15
USP39-204ENST00000409766 HAUS4Q9H6D7 363 aa22.23■■□□□ 1.15
USP39-204ENST00000409766 PPP1R9AQ9ULJ8 1098 aa22.23■■□□□ 1.15
USP39-204ENST00000409766 EIF3CLB5ME19 914 aaKnown RBP22.22■■□□□ 1.15
USP39-204ENST00000409766 TBCAO75347 108 aaKnown RBP22.22■■□□□ 1.15
USP39-204ENST00000409766 MYBP10242 640 aa22.22■■□□□ 1.15
USP39-204ENST00000409766 EPHA7Q15375 998 aa22.22■■□□□ 1.15
USP39-204ENST00000409766 EIF3CQ99613 913 aaKnown RBP22.22■■□□□ 1.15
USP39-204ENST00000409766 CCDC94Q9BW85 323 aaPredicted RBP22.22■■□□□ 1.15
USP39-204ENST00000409766 TEKT3Q9BXF9 490 aa22.22■■□□□ 1.15
USP39-204ENST00000409766 RAVER2Q9HCJ3 691 aaKnown RBP22.22■■□□□ 1.15
USP39-204ENST00000409766 OLFML3Q9NRN5 406 aa22.22■■□□□ 1.15
USP39-204ENST00000409766 PARP14Q460N5 1801 aa22.21■■□□□ 1.15
USP39-204ENST00000409766 ZBTB39O15060 712 aa22.21■■□□□ 1.15
USP39-204ENST00000409766 CETN3O15182 167 aa22.21■■□□□ 1.15
USP39-204ENST00000409766 FLOT1O75955 427 aa22.21■■□□□ 1.15
USP39-204ENST00000409766 ALAS1P13196 640 aa22.21■■□□□ 1.15
USP39-204ENST00000409766 PPP2R3AQ06190 1150 aa22.21■■□□□ 1.15
USP39-204ENST00000409766 SMCR8Q8TEV9 937 aaPredicted RBP22.21■■□□□ 1.15
USP39-204ENST00000409766 UBXN4Q92575 508 aa22.21■■□□□ 1.15
USP39-204ENST00000409766 EDEM3Q9BZQ6 932 aa22.21■■□□□ 1.15
USP39-204ENST00000409766 BCAS3Q9H6U6 928 aa22.21■■□□□ 1.15
USP39-204ENST00000409766 WRAP73Q9P2S5 460 aaPredicted RBP22.21■■□□□ 1.15
USP39-204ENST00000409766 CTAGE9A4FU28 777 aa22.21■■□□□ 1.15
USP39-204ENST00000409766 PDXKO00764 312 aa22.21■■□□□ 1.15
USP39-204ENST00000409766 GAP43P17677 238 aa22.21■■□□□ 1.15
USP39-204ENST00000409766 NR2F2P24468 414 aa22.21■■□□□ 1.15
USP39-204ENST00000409766 MUM1L1Q5H9M0 696 aa22.21■■□□□ 1.15
USP39-204ENST00000409766 NIPA1Q7RTP0 329 aa22.21■■□□□ 1.15
USP39-204ENST00000409766 IL31RAQ8NI17 732 aa22.21■■□□□ 1.15
USP39-204ENST00000409766 BAP1Q92560 729 aa22.21■■□□□ 1.15
USP39-204ENST00000409766 NACC1Q96RE7 527 aa22.21■■□□□ 1.15
USP39-204ENST00000409766 POLD4Q9HCU8 107 aa22.21■■□□□ 1.15
USP39-204ENST00000409766 MAP3K20Q9NYL2 800 aaKnown RBP22.21■■□□□ 1.15
USP39-204ENST00000409766 TRIM10Q9UDY6 481 aa22.21■■□□□ 1.15
USP39-204ENST00000409766 FAM184BQ9ULE4 1060 aa22.21■■□□□ 1.15
USP39-204ENST00000409766 UTP18Q9Y5J1 556 aaKnown RBP eCLIP22.21■■□□□ 1.15
USP39-204ENST00000409766 PRPF6O94906 941 aaKnown RBP22.2■■□□□ 1.14
USP39-204ENST00000409766 USP14P54578 494 aa22.2■■□□□ 1.14
USP39-204ENST00000409766 DCAF15Q66K64 600 aa22.2■■□□□ 1.14
USP39-204ENST00000409766 FBXO38Q6PIJ6 1188 aa22.2■■□□□ 1.14
USP39-204ENST00000409766 ARHGAP27Q6ZUM4 889 aa22.2■■□□□ 1.14
USP39-204ENST00000409766 NEK11Q8NG66 645 aa22.2■■□□□ 1.14
USP39-204ENST00000409766 RPAP3Q9H6T3 665 aaPredicted RBP22.2■■□□□ 1.14
USP39-204ENST00000409766 KCNH7Q9NS40 1196 aa22.2■■□□□ 1.14
USP39-204ENST00000409766 ZNF112Q9UJU3 913 aa22.2■■□□□ 1.14
USP39-204ENST00000409766 ZNF541Q9H0D2 1346 aa22.2■■□□□ 1.14
USP39-204ENST00000409766 LOXHD1Q8IVV2 1947 aa22.2■■□□□ 1.14
USP39-204ENST00000409766 SAMD3Q8N6K7 520 aa22.19■■□□□ 1.14
USP39-204ENST00000409766 NLGN2Q8NFZ4 835 aa22.19■■□□□ 1.14
USP39-204ENST00000409766 SYTL5Q8TDW5 730 aaPredicted RBP22.19■■□□□ 1.14
USP39-204ENST00000409766 ARHGAP20Q9P2F6 1191 aa22.19■■□□□ 1.14
USP39-204ENST00000409766 GUCA1BQ9UMX6 200 aa22.19■■□□□ 1.14
USP39-204ENST00000409766 FRMPD4Q14CM0 1322 aa22.19■■□□□ 1.14
USP39-204ENST00000409766 SPP2Q13103 211 aa22.19■■□□□ 1.14
USP39-204ENST00000409766 TUBB2AQ13885 445 aa22.19■■□□□ 1.14
USP39-204ENST00000409766 PCNX4Q63HM2 1172 aa22.19■■□□□ 1.14
USP39-204ENST00000409766 SCYL3Q8IZE3 742 aa22.19■■□□□ 1.14
USP39-204ENST00000409766 TUBB2BQ9BVA1 445 aa22.19■■□□□ 1.14
USP39-204ENST00000409766 HOMER2Q9NSB8 354 aa22.19■■□□□ 1.14
USP39-204ENST00000409766 TYW1Q9NV66 732 aaKnown RBP22.19■■□□□ 1.14
USP39-204ENST00000409766 CDC23Q9UJX2 597 aa22.19■■□□□ 1.14
USP39-204ENST00000409766 UBIAD1Q9Y5Z9 338 aa22.19■■□□□ 1.14
USP39-204ENST00000409766 LRRC53A6NM62 1247 aa22.18■■□□□ 1.14
USP39-204ENST00000409766 SFI1A8K8P3 1242 aa22.18■■□□□ 1.14
USP39-204ENST00000409766 CALUO43852 315 aaPredicted RBP22.18■■□□□ 1.14
USP39-204ENST00000409766 GCNT3O95395 438 aa22.18■■□□□ 1.14
USP39-204ENST00000409766 PLEKP08567 350 aaPredicted RBP22.18■■□□□ 1.14
USP39-204ENST00000409766 H2AFXP16104 143 aaPredicted RBP22.18■■□□□ 1.14
USP39-204ENST00000409766 MRPS9P82933 396 aaKnown RBP22.18■■□□□ 1.14
USP39-204ENST00000409766 RRAGAQ7L523 313 aa22.18■■□□□ 1.14
USP39-204ENST00000409766 CCDC42Q96M95 316 aa22.18■■□□□ 1.14
USP39-204ENST00000409766 NAPGQ99747 312 aaPredicted RBP22.18■■□□□ 1.14
USP39-204ENST00000409766 KCND2Q9NZV8 630 aa22.18■■□□□ 1.14
USP39-204ENST00000409766 TFR2Q9UP52 801 aa22.18■■□□□ 1.14
USP39-204ENST00000409766 DHX15O43143 795 aaKnown RBP22.18■■□□□ 1.14
USP39-204ENST00000409766 NOL4O94818 638 aa22.18■■□□□ 1.14
USP39-204ENST00000409766 IPO7O95373 1038 aaKnown RBP22.18■■□□□ 1.14
USP39-204ENST00000409766 BACE1P56817 501 aa22.18■■□□□ 1.14
USP39-204ENST00000409766 TKFCQ3LXA3 575 aa22.18■■□□□ 1.14
USP39-204ENST00000409766 CCDC122Q5T0U0 273 aa22.18■■□□□ 1.14
USP39-204ENST00000409766 FRMD5Q7Z6J6 570 aa22.18■■□□□ 1.14
USP39-204ENST00000409766 ARID3AQ99856 593 aa22.18■■□□□ 1.14
USP39-204ENST00000409766 LXNQ9BS40 222 aa22.18■■□□□ 1.14
USP39-204ENST00000409766 ASTN1O14525 1302 aa22.17■■□□□ 1.14
USP39-204ENST00000409766 RCCD1A6NED2 376 aa22.17■■□□□ 1.14
USP39-204ENST00000409766 ZNF263O14978 683 aa22.17■■□□□ 1.14
USP39-204ENST00000409766 EIF3DO15371 548 aaKnown RBP eCLIP22.17■■□□□ 1.14
USP39-204ENST00000409766 FAM13AO94988 1023 aa22.17■■□□□ 1.14
USP39-204ENST00000409766 RPS6P62753 249 aaKnown RBP22.17■■□□□ 1.14
USP39-204ENST00000409766 PDXDC1Q6P996 788 aa22.17■■□□□ 1.14
USP39-204ENST00000409766 RSRC2Q7L4I2 434 aaKnown RBP22.17■■□□□ 1.14
USP39-204ENST00000409766 KIAA1328Q86T90 577 aa22.17■■□□□ 1.14
USP39-204ENST00000409766 NEK9Q8TD19 979 aa22.17■■□□□ 1.14
USP39-204ENST00000409766 ZKSCAN4Q969J2 545 aaPredicted RBP22.17■■□□□ 1.14
USP39-204ENST00000409766 PARVGQ9HBI0 331 aa22.17■■□□□ 1.14
USP39-204ENST00000409766 CEP72Q9P209 647 aa22.17■■□□□ 1.14
USP39-204ENST00000409766 PNMA2Q9UL42 364 aa22.17■■□□□ 1.14
USP39-204ENST00000409766 VWA5AO00534 786 aa22.16■■□□□ 1.14
USP39-204ENST00000409766 ZBED4O75132 1171 aa22.16■■□□□ 1.14
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms