RNA–Protein interactions for RNA: ENST00000409558.8

VPS54-203, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VPS54, Length 4,337 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-203ENST00000409558 FAM107BQ9H098 131 aa14.72□□□□□ -0.05
VPS54-203ENST00000409558 RBM12Q9NTZ6 932 aaKnown RBP14.72□□□□□ -0.05
VPS54-203ENST00000409558 RSPH14Q9UHP6 348 aa14.72□□□□□ -0.05
VPS54-203ENST00000409558 USP14P54578 494 aa14.72□□□□□ -0.05
VPS54-203ENST00000409558 PDXDC1Q6P996 788 aa14.72□□□□□ -0.05
VPS54-203ENST00000409558 CCDC17Q96LX7 622 aa14.72□□□□□ -0.05
VPS54-203ENST00000409558 EIF2AK1Q9BQI3 630 aaKnown RBP14.72□□□□□ -0.05
VPS54-203ENST00000409558 CCDC88AQ3V6T2 1871 aa14.72□□□□□ -0.05
VPS54-203ENST00000409558 SMCHD1A6NHR9 2005 aa14.72□□□□□ -0.05
VPS54-203ENST00000409558 CASZ1Q86V15 1759 aa14.71□□□□□ -0.05
VPS54-203ENST00000409558 GAS7O60861 476 aa14.71□□□□□ -0.05
VPS54-203ENST00000409558 AKAP3O75969 853 aa14.71□□□□□ -0.05
VPS54-203ENST00000409558 SNHG28P0DPA3 235 aa14.71□□□□□ -0.05
VPS54-203ENST00000409558 GGCXP38435 758 aa14.71□□□□□ -0.05
VPS54-203ENST00000409558 LRRC63Q05C16 580 aa14.71□□□□□ -0.05
VPS54-203ENST00000409558 DLGAP5Q15398 846 aa14.71□□□□□ -0.05
VPS54-203ENST00000409558 SLC27A3Q5K4L6 730 aa14.71□□□□□ -0.05
VPS54-203ENST00000409558 HAUS3Q68CZ6 603 aa14.71□□□□□ -0.05
VPS54-203ENST00000409558 PHLDB2Q86SQ0 1253 aa14.71□□□□□ -0.05
VPS54-203ENST00000409558 U2AF1L4Q8WU68 220 aaKnown RBP14.71□□□□□ -0.05
VPS54-203ENST00000409558 AGBL1Q96MI9 1066 aa14.71□□□□□ -0.05
VPS54-203ENST00000409558 NOX5Q96PH1 765 aa14.71□□□□□ -0.05
VPS54-203ENST00000409558 MAGEF1Q9HAY2 307 aa14.71□□□□□ -0.05
VPS54-203ENST00000409558 TCEAL9Q9UHQ7 104 aa14.71□□□□□ -0.05
VPS54-203ENST00000409558 PSMD14O00487 310 aa14.71□□□□□ -0.05
VPS54-203ENST00000409558 RNF40O75150 1001 aa14.71□□□□□ -0.05
VPS54-203ENST00000409558 XRCC5P13010 732 aaKnown RBP14.71□□□□□ -0.05
VPS54-203ENST00000409558 ALAS1P13196 640 aa14.71□□□□□ -0.05
VPS54-203ENST00000409558 GUCY2DQ02846 1103 aa14.71□□□□□ -0.05
VPS54-203ENST00000409558 PPP4R3AQ6IN85 833 aa14.71□□□□□ -0.05
VPS54-203ENST00000409558 HHIPL2Q6UWX4 724 aa14.71□□□□□ -0.05
VPS54-203ENST00000409558 EHBP1Q8NDI1 1231 aa14.71□□□□□ -0.05
VPS54-203ENST00000409558 SH2D4AQ9H788 454 aa14.71□□□□□ -0.05
VPS54-203ENST00000409558 CEP104O60308 925 aa14.71□□□□□ -0.06
VPS54-203ENST00000409558 COPB2P35606 906 aa14.71□□□□□ -0.06
VPS54-203ENST00000409558 ATP1A2P50993 1020 aa14.71□□□□□ -0.06
VPS54-203ENST00000409558 C15orf52Q6ZUT6 534 aaKnown RBP14.71□□□□□ -0.06
VPS54-203ENST00000409558 TRIM58Q8NG06 486 aa14.71□□□□□ -0.06
VPS54-203ENST00000409558 EHD4Q9H223 541 aa14.71□□□□□ -0.06
VPS54-203ENST00000409558 ZKSCAN7Q9P0L1 754 aaPredicted RBP14.71□□□□□ -0.06
VPS54-203ENST00000409558 GOLGA8IPA6NC78 632 aa14.7□□□□□ -0.06
VPS54-203ENST00000409558 GOLGA8JA6NMD2 632 aa14.7□□□□□ -0.06
VPS54-203ENST00000409558 STAT2P52630 851 aa14.7□□□□□ -0.06
VPS54-203ENST00000409558 MEA1Q16626 185 aa14.7□□□□□ -0.06
VPS54-203ENST00000409558 EXOC3L4Q17RC7 722 aa14.7□□□□□ -0.06
VPS54-203ENST00000409558 TMEM119Q4V9L6 283 aa14.7□□□□□ -0.06
VPS54-203ENST00000409558 C8orf74Q6P047 294 aa14.7□□□□□ -0.06
VPS54-203ENST00000409558 TMEM179Q6ZVK1 233 aa14.7□□□□□ -0.06
VPS54-203ENST00000409558 CCDC170Q8IYT3 715 aa14.7□□□□□ -0.06
VPS54-203ENST00000409558 USP20Q9Y2K6 914 aa14.7□□□□□ -0.06
VPS54-203ENST00000409558 IGKV6D-41A0A0C4DH26 115 aa14.7□□□□□ -0.06
VPS54-203ENST00000409558 ARP10275 920 aa14.7□□□□□ -0.06
VPS54-203ENST00000409558 SPATA4Q8NEY3 305 aa14.7□□□□□ -0.06
VPS54-203ENST00000409558 BAP1Q92560 729 aa14.7□□□□□ -0.06
VPS54-203ENST00000409558 RUFY1Q96T51 708 aa14.7□□□□□ -0.06
VPS54-203ENST00000409558 SELENOOQ9BVL4 669 aa14.7□□□□□ -0.06
VPS54-203ENST00000409558 LAMB2P55268 1798 aa14.7□□□□□ -0.06
VPS54-203ENST00000409558 PTK2Q05397 1052 aa14.7□□□□□ -0.06
VPS54-203ENST00000409558 GIT2Q14161 759 aa14.7□□□□□ -0.06
VPS54-203ENST00000409558 ZSCAN26Q16670 478 aa14.7□□□□□ -0.06
VPS54-203ENST00000409558 ODR4Q5SWX8 454 aa14.7□□□□□ -0.06
VPS54-203ENST00000409558 NSMFQ6X4W1 530 aa14.7□□□□□ -0.06
VPS54-203ENST00000409558 ZDHHC15Q96MV8 337 aa14.7□□□□□ -0.06
VPS54-203ENST00000409558 GCNT4Q9P109 453 aa14.7□□□□□ -0.06
VPS54-203ENST00000409558 BCCIPQ9P287 314 aaKnown RBP eCLIP14.7□□□□□ -0.06
VPS54-203ENST00000409558 SNX12Q9UMY4 172 aa14.7□□□□□ -0.06
VPS54-203ENST00000409558 CCDC66A2RUB6 948 aa14.7□□□□□ -0.06
VPS54-203ENST00000409558 YDJCA8MPS7 323 aa14.7□□□□□ -0.06
VPS54-203ENST00000409558 CKAP4Q07065 602 aaKnown RBP14.7□□□□□ -0.06
VPS54-203ENST00000409558 NFU1Q9UMS0 254 aa14.7□□□□□ -0.06
VPS54-203ENST00000409558 CTDP1Q9Y5B0 961 aaPredicted RBP14.7□□□□□ -0.06
VPS54-203ENST00000409558 ZNF746Q6NUN9 644 aaPredicted RBP14.69□□□□□ -0.06
VPS54-203ENST00000409558 LEKR1Q6ZMV7 388 aa14.69□□□□□ -0.06
VPS54-203ENST00000409558 RETREG2Q8NC44 543 aa14.69□□□□□ -0.06
VPS54-203ENST00000409558 EPB41L5Q9HCM4 733 aa14.69□□□□□ -0.06
VPS54-203ENST00000409558 NOL4O94818 638 aa14.69□□□□□ -0.06
VPS54-203ENST00000409558 SPATA31C1P0DKV0 1188 aa14.69□□□□□ -0.06
VPS54-203ENST00000409558 EIF2AK2P19525 551 aaKnown RBP14.69□□□□□ -0.06
VPS54-203ENST00000409558 DDX42Q86XP3 938 aaKnown RBP eCLIP14.69□□□□□ -0.06
VPS54-203ENST00000409558 C10orf67Q8IYJ2 551 aa14.69□□□□□ -0.06
VPS54-203ENST00000409558 HOOK2Q96ED9 719 aa14.69□□□□□ -0.06
VPS54-203ENST00000409558 LRRC27Q9C0I9 530 aa14.69□□□□□ -0.06
VPS54-203ENST00000409558 MYO1AQ9UBC5 1043 aa14.69□□□□□ -0.06
VPS54-203ENST00000409558 AJAP1Q9UKB5 411 aaPredicted RBP14.69□□□□□ -0.06
VPS54-203ENST00000409558 JRKLQ9Y4A0 524 aa14.69□□□□□ -0.06
VPS54-203ENST00000409558 CENPFP49454 3210 aa14.69□□□□□ -0.06
VPS54-203ENST00000409558 POTEB2H3BUK9 544 aa14.69□□□□□ -0.06
VPS54-203ENST00000409558 CYP2C19P33261 490 aa14.69□□□□□ -0.06
VPS54-203ENST00000409558 SH2D3CQ8N5H7 860 aa14.69□□□□□ -0.06
VPS54-203ENST00000409558 GBP3Q9H0R5 595 aa14.69□□□□□ -0.06
VPS54-203ENST00000409558 ACP6Q9NPH0 428 aa14.69□□□□□ -0.06
VPS54-203ENST00000409558 SPATA31A6Q5VVP1 1343 aa14.69□□□□□ -0.06
VPS54-203ENST00000409558 CC2D2BQ6DHV5 1058 aa14.68□□□□□ -0.06
VPS54-203ENST00000409558 ZNF577Q9BSK1 485 aa14.68□□□□□ -0.06
VPS54-203ENST00000409558 KDM3AQ9Y4C1 1321 aa14.68□□□□□ -0.06
VPS54-203ENST00000409558 NRAPQ86VF7 1730 aa14.68□□□□□ -0.06
VPS54-203ENST00000409558 ECM2O94769 699 aaPredicted RBP14.68□□□□□ -0.06
VPS54-203ENST00000409558 NR3C1P04150 777 aa14.68□□□□□ -0.06
VPS54-203ENST00000409558 CLK2P49760 499 aaKnown RBP14.68□□□□□ -0.06
VPS54-203ENST00000409558 NBPF9Q3BBW0 867 aa14.68□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms