RNA–Protein interactions for RNA: ENST00000409050.1

SCN1A-203, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5 BASIC

Gene SCN1A, Length 5,946 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-203ENST00000409050 EPB41L3Q9Y2J2 1087 aaPredicted RBP6.56□□□□□ -1.36
SCN1A-203ENST00000409050 PCDHB4Q9Y5E5 795 aa6.56□□□□□ -1.36
SCN1A-203ENST00000409050 PCDHA13Q9Y5I0 950 aa6.56□□□□□ -1.36
SCN1A-203ENST00000409050 PRPSAP2O60256 369 aa6.56□□□□□ -1.36
SCN1A-203ENST00000409050 MXI1P50539 228 aa6.56□□□□□ -1.36
SCN1A-203ENST00000409050 SNRPFP62306 86 aaKnown RBP6.56□□□□□ -1.36
SCN1A-203ENST00000409050 TRIM60Q495X7 471 aa6.56□□□□□ -1.36
SCN1A-203ENST00000409050 TBC1D9BQ66K14 1250 aa6.56□□□□□ -1.36
SCN1A-203ENST00000409050 TRIM68Q6AZZ1 485 aa6.56□□□□□ -1.36
SCN1A-203ENST00000409050 TRIML2Q8N7C3 387 aa6.56□□□□□ -1.36
SCN1A-203ENST00000409050 DCAF4Q8WV16 495 aa6.56□□□□□ -1.36
SCN1A-203ENST00000409050 SNX25Q9H3E2 840 aa6.56□□□□□ -1.36
SCN1A-203ENST00000409050 ST7Q9NRC1 585 aa6.56□□□□□ -1.36
SCN1A-203ENST00000409050 NUB1Q9Y5A7 615 aa6.56□□□□□ -1.36
SCN1A-203ENST00000409050 BICRAQ9NZM4 1560 aa6.56□□□□□ -1.36
SCN1A-203ENST00000409050 CCDC78A2IDD5 438 aa6.55□□□□□ -1.36
SCN1A-203ENST00000409050 SPAG6O75602 509 aa6.55□□□□□ -1.36
SCN1A-203ENST00000409050 FGAP02671 866 aa6.55□□□□□ -1.36
SCN1A-203ENST00000409050 TGFBRAP1Q8WUH2 860 aa6.55□□□□□ -1.36
SCN1A-203ENST00000409050 PPWD1Q96BP3 646 aaKnown RBP6.55□□□□□ -1.36
SCN1A-203ENST00000409050 ANKRD27Q96NW4 1050 aa6.55□□□□□ -1.36
SCN1A-203ENST00000409050 MPP6Q9NZW5 540 aa6.55□□□□□ -1.36
SCN1A-203ENST00000409050 PTCH1Q13635 1447 aa6.55□□□□□ -1.36
SCN1A-203ENST00000409050 E7ENQ6 273 aa6.55□□□□□ -1.36
SCN1A-203ENST00000409050 PSAPP07602 524 aa6.55□□□□□ -1.36
SCN1A-203ENST00000409050 CDH2P19022 906 aaPredicted RBP6.55□□□□□ -1.36
SCN1A-203ENST00000409050 SMARCA1P28370 1054 aa6.55□□□□□ -1.36
SCN1A-203ENST00000409050 ABCE1P61221 599 aaKnown RBP6.55□□□□□ -1.36
SCN1A-203ENST00000409050 STILQ15468 1287 aa6.55□□□□□ -1.36
SCN1A-203ENST00000409050 ITPRIPL1Q6GPH6 555 aa6.55□□□□□ -1.36
SCN1A-203ENST00000409050 SCYL2Q6P3W7 929 aa6.55□□□□□ -1.36
SCN1A-203ENST00000409050 RAPH1Q70E73 1250 aa6.55□□□□□ -1.36
SCN1A-203ENST00000409050 FOXP4Q8IVH2 680 aaPredicted RBP6.55□□□□□ -1.36
SCN1A-203ENST00000409050 SH3TC2Q8TF17 1288 aa6.55□□□□□ -1.36
SCN1A-203ENST00000409050 JARID2Q92833 1246 aaPredicted RBP6.55□□□□□ -1.36
SCN1A-203ENST00000409050 NHEJ1Q9H9Q4 299 aaPredicted RBP6.55□□□□□ -1.36
SCN1A-203ENST00000409050 TMEM51Q9NW97 253 aa6.55□□□□□ -1.36
SCN1A-203ENST00000409050 NDUFA13Q9P0J0 144 aa6.55□□□□□ -1.36
SCN1A-203ENST00000409050 FBXO40Q9UH90 709 aa6.55□□□□□ -1.36
SCN1A-203ENST00000409050 MAN1B1Q9UKM7 699 aa6.55□□□□□ -1.36
SCN1A-203ENST00000409050 CDK12Q9NYV4 1490 aaPredicted RBP6.55□□□□□ -1.36
SCN1A-203ENST00000409050 OSBPP22059 807 aa6.55□□□□□ -1.36
SCN1A-203ENST00000409050 SLC1A1P43005 524 aa6.55□□□□□ -1.36
SCN1A-203ENST00000409050 ATP1A2P50993 1020 aa6.55□□□□□ -1.36
SCN1A-203ENST00000409050 TBCCQ15814 346 aa6.55□□□□□ -1.36
SCN1A-203ENST00000409050 ICE2Q659A1 982 aa6.55□□□□□ -1.36
SCN1A-203ENST00000409050 SETD3Q86TU7 594 aaPredicted RBP6.55□□□□□ -1.36
SCN1A-203ENST00000409050 NLGN1Q8N2Q7 840 aa6.55□□□□□ -1.36
SCN1A-203ENST00000409050 STX19Q8N4C7 294 aa6.55□□□□□ -1.36
SCN1A-203ENST00000409050 MB21D1Q8N884 522 aa6.55□□□□□ -1.36
SCN1A-203ENST00000409050 FAM20AQ96MK3 541 aa6.55□□□□□ -1.36
SCN1A-203ENST00000409050 WNT8AQ9H1J5 351 aa6.55□□□□□ -1.36
SCN1A-203ENST00000409050 NDST4Q9H3R1 872 aa6.55□□□□□ -1.36
SCN1A-203ENST00000409050 SLC38A10Q9HBR0 1119 aa6.55□□□□□ -1.36
SCN1A-203ENST00000409050 XAB2Q9HCS7 855 aaKnown RBP6.55□□□□□ -1.36
SCN1A-203ENST00000409050 STX18Q9P2W9 335 aaKnown RBP6.55□□□□□ -1.36
SCN1A-203ENST00000409050 ZNF219Q9P2Y4 722 aaPredicted RBP6.55□□□□□ -1.36
SCN1A-203ENST00000409050 LGALS16A8MUM7 142 aa6.55□□□□□ -1.36
SCN1A-203ENST00000409050 SH2B2O14492 632 aaPredicted RBP6.55□□□□□ -1.36
SCN1A-203ENST00000409050 HNRNPDLO14979 420 aaKnown RBP6.55□□□□□ -1.36
SCN1A-203ENST00000409050 KRT7P08729 469 aa6.55□□□□□ -1.36
SCN1A-203ENST00000409050 GSPT1P15170 499 aaKnown RBP6.55□□□□□ -1.36
SCN1A-203ENST00000409050 XPAP23025 273 aaPredicted RBP6.55□□□□□ -1.36
SCN1A-203ENST00000409050 PPP2R5CQ13362 524 aa6.55□□□□□ -1.36
SCN1A-203ENST00000409050 RIBC1Q8N443 379 aaPredicted RBP6.55□□□□□ -1.36
SCN1A-203ENST00000409050 PYROXD1Q8WU10 500 aa6.55□□□□□ -1.36
SCN1A-203ENST00000409050 DACT3Q96B18 629 aaPredicted RBP6.55□□□□□ -1.36
SCN1A-203ENST00000409050 MRRFQ96E11 262 aaKnown RBP6.55□□□□□ -1.36
SCN1A-203ENST00000409050 PARD6BQ9BYG5 372 aa6.55□□□□□ -1.36
SCN1A-203ENST00000409050 KMT5AQ9NQR1 393 aa6.55□□□□□ -1.36
SCN1A-203ENST00000409050 ASNSD1Q9NWL6 643 aa6.55□□□□□ -1.36
SCN1A-203ENST00000409050 SMG5Q9UPR3 1016 aaKnown RBP6.55□□□□□ -1.36
SCN1A-203ENST00000409050 C16orf96A6NNT2 1141 aa6.55□□□□□ -1.36
SCN1A-203ENST00000409050 CDC42EP1Q00587 391 aa6.55□□□□□ -1.36
SCN1A-203ENST00000409050 RBL2Q08999 1139 aa6.55□□□□□ -1.36
SCN1A-203ENST00000409050 MESDQ14696 234 aa6.55□□□□□ -1.36
SCN1A-203ENST00000409050 STAT4Q14765 748 aa6.55□□□□□ -1.36
SCN1A-203ENST00000409050 ALX1Q15699 326 aa6.55□□□□□ -1.36
SCN1A-203ENST00000409050 ADRM1Q16186 407 aa6.55□□□□□ -1.36
SCN1A-203ENST00000409050 LONRF3Q496Y0 759 aa6.55□□□□□ -1.36
SCN1A-203ENST00000409050 MFSD14BQ5SR56 506 aa6.55□□□□□ -1.36
SCN1A-203ENST00000409050 PRUNE1Q86TP1 453 aa6.55□□□□□ -1.36
SCN1A-203ENST00000409050 SESTD1Q86VW0 696 aa6.55□□□□□ -1.36
SCN1A-203ENST00000409050 ENAHQ8N8S7 591 aaPredicted RBP6.55□□□□□ -1.36
SCN1A-203ENST00000409050 TMEM35BQ8NCS4 154 aa6.55□□□□□ -1.36
SCN1A-203ENST00000409050 GPT2Q8TD30 523 aa6.55□□□□□ -1.36
SCN1A-203ENST00000409050 DTX3LQ8TDB6 740 aa6.55□□□□□ -1.36
SCN1A-203ENST00000409050 ATP6V1E2Q96A05 226 aa6.55□□□□□ -1.36
SCN1A-203ENST00000409050 OPTNQ96CV9 577 aa6.55□□□□□ -1.36
SCN1A-203ENST00000409050 EMILIN3Q9NT22 766 aa6.55□□□□□ -1.36
SCN1A-203ENST00000409050 CHCHD3Q9NX63 227 aaKnown RBP6.55□□□□□ -1.36
SCN1A-203ENST00000409050 NSMCE4AQ9NXX6 385 aa6.55□□□□□ -1.36
SCN1A-203ENST00000409050 PCDHA1Q9Y5I3 950 aa6.55□□□□□ -1.36
SCN1A-203ENST00000409050 COPG1Q9Y678 874 aaKnown RBP6.55□□□□□ -1.36
SCN1A-203ENST00000409050 MAGI2Q86UL8 1455 aa6.55□□□□□ -1.36
SCN1A-203ENST00000409050 BTBD18B2RXH4 712 aa6.54□□□□□ -1.36
SCN1A-203ENST00000409050 BUB1O43683 1085 aa6.54□□□□□ -1.36
SCN1A-203ENST00000409050 ESRRBO95718 433 aa6.54□□□□□ -1.36
SCN1A-203ENST00000409050 APOA1P02647 267 aa6.54□□□□□ -1.36
SCN1A-203ENST00000409050 CPA1P15085 419 aa6.54□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 74 ms