RNA–Protein interactions for RNA: ENST00000406134.5

MSH2-202, Transcript of mutS homolog 2, humanhuman

TSL 1 (best) BASIC

Gene MSH2, Length 3,628 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH2-202ENST00000406134 ARID2Q68CP9 1835 aa10.85□□□□□ -0.67
MSH2-202ENST00000406134 TRAF5O00463 557 aa10.85□□□□□ -0.67
MSH2-202ENST00000406134 SLC9A1P19634 815 aa10.85□□□□□ -0.67
MSH2-202ENST00000406134 EDRF1Q3B7T1 1238 aa10.85□□□□□ -0.67
MSH2-202ENST00000406134 RAB34Q9BZG1 259 aa10.85□□□□□ -0.67
MSH2-202ENST00000406134 EMILIN3Q9NT22 766 aa10.85□□□□□ -0.67
MSH2-202ENST00000406134 IGLV3-22A0A075B6J6 115 aa10.85□□□□□ -0.67
MSH2-202ENST00000406134 BTNL10A8MVZ5 291 aa10.85□□□□□ -0.67
MSH2-202ENST00000406134 EML1O00423 815 aa10.85□□□□□ -0.67
MSH2-202ENST00000406134 AKR1B10O60218 316 aa10.85□□□□□ -0.67
MSH2-202ENST00000406134 AKAP3O75969 853 aa10.85□□□□□ -0.67
MSH2-202ENST00000406134 TCP1P17987 556 aaKnown RBP10.85□□□□□ -0.67
MSH2-202ENST00000406134 BRD2P25440 801 aaKnown RBP10.85□□□□□ -0.67
MSH2-202ENST00000406134 CRKP46108 304 aa10.85□□□□□ -0.67
MSH2-202ENST00000406134 BMT2Q1RMZ1 405 aa10.85□□□□□ -0.67
MSH2-202ENST00000406134 FAM133AQ8N9E0 248 aa10.85□□□□□ -0.67
MSH2-202ENST00000406134 SYT2Q8N9I0 419 aaPredicted RBP10.85□□□□□ -0.67
MSH2-202ENST00000406134 NT5C3AQ9H0P0 336 aa10.85□□□□□ -0.67
MSH2-202ENST00000406134 STIM2Q9P246 746 aa10.85□□□□□ -0.67
MSH2-202ENST00000406134 SRCAPQ6ZRS2 3230 aa10.84□□□□□ -0.67
MSH2-202ENST00000406134 MEIS1O00470 390 aa10.84□□□□□ -0.67
MSH2-202ENST00000406134 TOM1O60784 492 aa10.84□□□□□ -0.67
MSH2-202ENST00000406134 FTCDO95954 541 aa10.84□□□□□ -0.67
MSH2-202ENST00000406134 PTK2Q05397 1052 aa10.84□□□□□ -0.67
MSH2-202ENST00000406134 KCNH2Q12809 1159 aa10.84□□□□□ -0.67
MSH2-202ENST00000406134 EPHA7Q15375 998 aa10.84□□□□□ -0.67
MSH2-202ENST00000406134 SFMBT2Q5VUG0 894 aa10.84□□□□□ -0.67
MSH2-202ENST00000406134 SEPT12Q8IYM1 358 aa10.84□□□□□ -0.67
MSH2-202ENST00000406134 TBC1D5Q92609 795 aa10.84□□□□□ -0.67
MSH2-202ENST00000406134 ARL8AQ96BM9 186 aa10.84□□□□□ -0.67
MSH2-202ENST00000406134 RUSC1Q9BVN2 902 aa10.84□□□□□ -0.67
MSH2-202ENST00000406134 GPR88Q9GZN0 384 aa10.84□□□□□ -0.67
MSH2-202ENST00000406134 PCDHA1Q9Y5I3 950 aa10.84□□□□□ -0.67
MSH2-202ENST00000406134 SPATA31A6Q5VVP1 1343 aa10.84□□□□□ -0.67
MSH2-202ENST00000406134 USO1O60763 962 aaKnown RBP10.84□□□□□ -0.67
MSH2-202ENST00000406134 PON1P27169 355 aa10.84□□□□□ -0.67
MSH2-202ENST00000406134 SREBF1P36956 1147 aa10.84□□□□□ -0.67
MSH2-202ENST00000406134 TNNT3P45378 269 aaPredicted RBP10.84□□□□□ -0.67
MSH2-202ENST00000406134 CASP4P49662 377 aa10.84□□□□□ -0.67
MSH2-202ENST00000406134 MRPL12P52815 198 aaKnown RBP10.84□□□□□ -0.67
MSH2-202ENST00000406134 ARHGAP4P98171 946 aa10.84□□□□□ -0.67
MSH2-202ENST00000406134 CAGE1Q8TC20 777 aa10.84□□□□□ -0.67
MSH2-202ENST00000406134 SYT11Q9BT88 431 aa10.84□□□□□ -0.67
MSH2-202ENST00000406134 GOLPH3Q9H4A6 298 aa10.84□□□□□ -0.67
MSH2-202ENST00000406134 NYAP2Q9P242 653 aa10.84□□□□□ -0.67
MSH2-202ENST00000406134 A0A1W2PRG0 241 aa10.84□□□□□ -0.67
MSH2-202ENST00000406134 MSH4O15457 936 aa10.84□□□□□ -0.67
MSH2-202ENST00000406134 TGFB1I1O43294 461 aa10.84□□□□□ -0.67
MSH2-202ENST00000406134 SLC26A4O43511 780 aa10.84□□□□□ -0.67
MSH2-202ENST00000406134 FGFR1OPO95684 399 aaKnown RBP10.84□□□□□ -0.67
MSH2-202ENST00000406134 EPB41P11171 864 aaKnown RBP10.84□□□□□ -0.67
MSH2-202ENST00000406134 CARSP49589 748 aaKnown RBP10.84□□□□□ -0.67
MSH2-202ENST00000406134 SFR1Q86XK3 245 aa10.84□□□□□ -0.67
MSH2-202ENST00000406134 DCAF4Q8WV16 495 aa10.84□□□□□ -0.67
MSH2-202ENST00000406134 IDI2Q9BXS1 227 aa10.84□□□□□ -0.67
MSH2-202ENST00000406134 POLD4Q9HCU8 107 aa10.84□□□□□ -0.67
MSH2-202ENST00000406134 WRAP73Q9P2S5 460 aaPredicted RBP10.84□□□□□ -0.67
MSH2-202ENST00000406134 ATRNL1Q5VV63 1379 aa10.83□□□□□ -0.68
MSH2-202ENST00000406134 UBAP1LF5GYI3 381 aa10.83□□□□□ -0.68
MSH2-202ENST00000406134 MYO1CO00159 1063 aa10.83□□□□□ -0.68
MSH2-202ENST00000406134 MCM3P25205 808 aa10.83□□□□□ -0.68
MSH2-202ENST00000406134 RPA1P27694 616 aa10.83□□□□□ -0.68
MSH2-202ENST00000406134 GPS2Q13227 327 aa10.83□□□□□ -0.68
MSH2-202ENST00000406134 AFAP1L1Q8TED9 768 aa10.83□□□□□ -0.68
MSH2-202ENST00000406134 TSG101Q99816 390 aa10.83□□□□□ -0.68
MSH2-202ENST00000406134 WDR18Q9BV38 432 aa10.83□□□□□ -0.68
MSH2-202ENST00000406134 PLCB1Q9NQ66 1216 aa10.83□□□□□ -0.68
MSH2-202ENST00000406134 STXBP5LQ9Y2K9 1186 aa10.83□□□□□ -0.68
MSH2-202ENST00000406134 COL2A1P02458 1487 aaPredicted RBP10.83□□□□□ -0.68
MSH2-202ENST00000406134 CIITAP33076 1130 aa10.83□□□□□ -0.68
MSH2-202ENST00000406134 MAP9Q49MG5 647 aa10.83□□□□□ -0.68
MSH2-202ENST00000406134 HERC4Q5GLZ8 1057 aaPredicted RBP10.83□□□□□ -0.68
MSH2-202ENST00000406134 DACT2Q5SW24 774 aa10.83□□□□□ -0.68
MSH2-202ENST00000406134 SND1Q7KZF4 910 aaKnown RBP eCLIP10.83□□□□□ -0.68
MSH2-202ENST00000406134 GMCL1P1Q8NEA9 526 aa10.83□□□□□ -0.68
MSH2-202ENST00000406134 CASKIN2Q8WXE0 1202 aa10.83□□□□□ -0.68
MSH2-202ENST00000406134 LRRC27Q9C0I9 530 aa10.83□□□□□ -0.68
MSH2-202ENST00000406134 ADAMTS1Q9UHI8 967 aa10.83□□□□□ -0.68
MSH2-202ENST00000406134 HDAC9Q9UKV0 1011 aa10.83□□□□□ -0.68
MSH2-202ENST00000406134 ESYT3A0FGR9 886 aa10.83□□□□□ -0.68
MSH2-202ENST00000406134 ZNF233A6NK53 670 aa10.83□□□□□ -0.68
MSH2-202ENST00000406134 SLC20A2Q08357 652 aa10.83□□□□□ -0.68
MSH2-202ENST00000406134 ADAM9Q13443 819 aa10.83□□□□□ -0.68
MSH2-202ENST00000406134 SLC9C1Q4G0N8 1177 aa10.83□□□□□ -0.68
MSH2-202ENST00000406134 SLC27A3Q5K4L6 730 aa10.83□□□□□ -0.68
MSH2-202ENST00000406134 IQCKQ8N0W5 287 aa10.83□□□□□ -0.68
MSH2-202ENST00000406134 ZIM3Q96PE6 472 aa10.83□□□□□ -0.68
MSH2-202ENST00000406134 NOX5Q96PH1 765 aa10.83□□□□□ -0.68
MSH2-202ENST00000406134 DEF6Q9H4E7 631 aa10.83□□□□□ -0.68
MSH2-202ENST00000406134 RRP15Q9Y3B9 282 aaKnown RBP10.83□□□□□ -0.68
MSH2-202ENST00000406134 MPHOSPH10O00566 681 aaKnown RBP10.82□□□□□ -0.68
MSH2-202ENST00000406134 ZBTB39O15060 712 aa10.82□□□□□ -0.68
MSH2-202ENST00000406134 IPO7O95373 1038 aaKnown RBP10.82□□□□□ -0.68
MSH2-202ENST00000406134 UCHL3P15374 230 aa10.82□□□□□ -0.68
MSH2-202ENST00000406134 NR2F2P24468 414 aa10.82□□□□□ -0.68
MSH2-202ENST00000406134 MATR3P43243 847 aaKnown RBP eCLIP10.82□□□□□ -0.68
MSH2-202ENST00000406134 TCP10Q12799 353 aa10.82□□□□□ -0.68
MSH2-202ENST00000406134 CCDC40Q4G0X9 1142 aa10.82□□□□□ -0.68
MSH2-202ENST00000406134 GJB7Q6PEY0 223 aa10.82□□□□□ -0.68
MSH2-202ENST00000406134 TEKT1Q969V4 418 aa10.82□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms