RNA–Protein interactions for RNA: ENST00000397906.6

TTC28-201, Transcript of tetratricopeptide repeat domain 28, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene TTC28, Length 11,795 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28-201ENST00000397906 TTC25Q96NG3 672 aa12.28□□□□□ -0.44
TTC28-201ENST00000397906 KRT10P13645 584 aa12.28□□□□□ -0.44
TTC28-201ENST00000397906 HMGCS2P54868 508 aa12.28□□□□□ -0.44
TTC28-201ENST00000397906 B4GALNT4Q76KP1 1039 aa12.28□□□□□ -0.44
TTC28-201ENST00000397906 ZNF302Q9NR11 478 aa12.28□□□□□ -0.44
TTC28-201ENST00000397906 TNS3Q68CZ2 1445 aa12.28□□□□□ -0.44
TTC28-201ENST00000397906 ARHGEF37A1IGU5 675 aa12.28□□□□□ -0.44
TTC28-201ENST00000397906 CACNA2D3Q8IZS8 1091 aa12.28□□□□□ -0.44
TTC28-201ENST00000397906 CABS1Q96KC9 395 aa12.28□□□□□ -0.44
TTC28-201ENST00000397906 RPAP3Q9H6T3 665 aaPredicted RBP12.28□□□□□ -0.44
TTC28-201ENST00000397906 PSMD2Q13200 908 aa12.28□□□□□ -0.44
TTC28-201ENST00000397906 ATP6V0A4Q9HBG4 840 aa12.28□□□□□ -0.44
TTC28-201ENST00000397906 NSUN7Q8NE18 718 aaKnown RBP12.28□□□□□ -0.44
TTC28-201ENST00000397906 DCAF4Q8WV16 495 aa12.28□□□□□ -0.44
TTC28-201ENST00000397906 VCXQ9H320 206 aa12.28□□□□□ -0.44
TTC28-201ENST00000397906 PPP1R12AO14974 1030 aaPredicted RBP12.27□□□□□ -0.44
TTC28-201ENST00000397906 CLDN3O15551 220 aa12.27□□□□□ -0.44
TTC28-201ENST00000397906 JAK3P52333 1124 aa12.27□□□□□ -0.44
TTC28-201ENST00000397906 SLC39A14Q15043 492 aa12.27□□□□□ -0.44
TTC28-201ENST00000397906 PCDHA5Q9Y5H7 936 aa12.27□□□□□ -0.44
TTC28-201ENST00000397906 TTC31Q49AM3 519 aaPredicted RBP12.27□□□□□ -0.44
TTC28-201ENST00000397906 ZNF658Q5TYW1 1059 aaPredicted RBP12.27□□□□□ -0.44
TTC28-201ENST00000397906 RAB44Q7Z6P3 723 aaPredicted RBP12.27□□□□□ -0.44
TTC28-201ENST00000397906 CUEDC2Q9H467 287 aa12.27□□□□□ -0.44
TTC28-201ENST00000397906 ACCSLQ4AC99 568 aa12.27□□□□□ -0.44
TTC28-201ENST00000397906 EXT2Q93063 718 aa12.27□□□□□ -0.44
TTC28-201ENST00000397906 RNF146Q9NTX7 359 aa12.27□□□□□ -0.44
TTC28-201ENST00000397906 CXCR5P32302 372 aa12.27□□□□□ -0.45
TTC28-201ENST00000397906 RAB3IPQ96QF0 476 aaPredicted RBP12.27□□□□□ -0.45
TTC28-201ENST00000397906 HACD3Q9P035 362 aa12.27□□□□□ -0.45
TTC28-201ENST00000397906 RNF123Q5XPI4 1314 aa12.27□□□□□ -0.45
TTC28-201ENST00000397906 PNMA8AQ86V59 439 aaPredicted RBP12.27□□□□□ -0.45
TTC28-201ENST00000397906 RMDN2Q96LZ7 410 aa12.27□□□□□ -0.45
TTC28-201ENST00000397906 POTEMA6NI47 508 aa12.27□□□□□ -0.45
TTC28-201ENST00000397906 TNPO2O14787 897 aaKnown RBP12.27□□□□□ -0.45
TTC28-201ENST00000397906 PPP6R2O75170 966 aa12.27□□□□□ -0.45
TTC28-201ENST00000397906 SSTR3P32745 418 aaPredicted RBP12.27□□□□□ -0.45
TTC28-201ENST00000397906 PHKA2P46019 1235 aa12.27□□□□□ -0.45
TTC28-201ENST00000397906 ARL13BQ3SXY8 428 aa12.27□□□□□ -0.45
TTC28-201ENST00000397906 PPP6R3Q5H9R7 873 aaPredicted RBP12.27□□□□□ -0.45
TTC28-201ENST00000397906 TTC19Q6DKK2 380 aaPredicted RBP12.27□□□□□ -0.45
TTC28-201ENST00000397906 PODNQ7Z5L7 613 aa12.27□□□□□ -0.45
TTC28-201ENST00000397906 CROCCP2Q86T23 111 aa12.27□□□□□ -0.45
TTC28-201ENST00000397906 LRRC43Q8N309 656 aa12.27□□□□□ -0.45
TTC28-201ENST00000397906 CASQ2O14958 399 aaPredicted RBP12.27□□□□□ -0.45
TTC28-201ENST00000397906 UPP2O95045 317 aa12.27□□□□□ -0.45
TTC28-201ENST00000397906 SWSAP1Q6NVH7 229 aa12.27□□□□□ -0.45
TTC28-201ENST00000397906 EPN1Q9Y6I3 576 aaPredicted RBP12.27□□□□□ -0.45
TTC28-201ENST00000397906 GUCY2DQ02846 1103 aa12.27□□□□□ -0.45
TTC28-201ENST00000397906 FAM117BQ6P1L5 589 aa12.26□□□□□ -0.45
TTC28-201ENST00000397906 HUS1O60921 280 aa12.26□□□□□ -0.45
TTC28-201ENST00000397906 FTCDO95954 541 aa12.26□□□□□ -0.45
TTC28-201ENST00000397906 CYP2E1P05181 493 aaPredicted RBP12.26□□□□□ -0.45
TTC28-201ENST00000397906 MXI1P50539 228 aa12.26□□□□□ -0.45
TTC28-201ENST00000397906 TMEM260Q9NX78 707 aa12.26□□□□□ -0.45
TTC28-201ENST00000397906 MROH7-TTC4A0A0A0MT08 1334 aa12.26□□□□□ -0.45
TTC28-201ENST00000397906 SLC16A4O15374 487 aa12.26□□□□□ -0.45
TTC28-201ENST00000397906 PMLP29590 882 aa12.26□□□□□ -0.45
TTC28-201ENST00000397906 TRIM11Q96F44 468 aa12.26□□□□□ -0.45
TTC28-201ENST00000397906 CYP19A1P11511 503 aaPredicted RBP12.26□□□□□ -0.45
TTC28-201ENST00000397906 TBRG4Q969Z0 631 aaKnown RBP eCLIP12.26□□□□□ -0.451e-6■■■■■ 48.6
TTC28-201ENST00000397906 FBXO40Q9UH90 709 aa12.26□□□□□ -0.45
TTC28-201ENST00000397906 TSR3Q9UJK0 312 aaKnown RBP12.26□□□□□ -0.45
TTC28-201ENST00000397906 KCNH4Q9UQ05 1017 aa12.26□□□□□ -0.45
TTC28-201ENST00000397906 CYP4F22Q6NT55 531 aa12.26□□□□□ -0.45
TTC28-201ENST00000397906 TTC1Q99614 292 aa12.26□□□□□ -0.45
TTC28-201ENST00000397906 MAN1B1Q9UKM7 699 aa12.26□□□□□ -0.45
TTC28-201ENST00000397906 LRRD1A4D1F6 860 aa12.26□□□□□ -0.45
TTC28-201ENST00000397906 CYP27A1Q02318 531 aa12.26□□□□□ -0.45
TTC28-201ENST00000397906 GIMAP8Q8ND71 665 aaPredicted RBP12.26□□□□□ -0.45
TTC28-201ENST00000397906 NSUN6Q8TEA1 469 aaKnown RBP12.26□□□□□ -0.45
TTC28-201ENST00000397906 MMTAG2Q9BU76 263 aaKnown RBP12.26□□□□□ -0.45
TTC28-201ENST00000397906 DPCR1Q3MIW9 517 aa12.26□□□□□ -0.45
TTC28-201ENST00000397906 TBC1D10CQ8IV04 446 aa12.26□□□□□ -0.45
TTC28-201ENST00000397906 EFCAB13Q8IY85 973 aa12.26□□□□□ -0.45
TTC28-201ENST00000397906 MAGOHBQ96A72 148 aaKnown RBP12.26□□□□□ -0.45
TTC28-201ENST00000397906 GTF2A1P52655 376 aaPredicted RBP12.26□□□□□ -0.45
TTC28-201ENST00000397906 EPHA10Q5JZY3 1008 aa12.26□□□□□ -0.45
TTC28-201ENST00000397906 RSRC1Q96IZ7 334 aaKnown RBP12.26□□□□□ -0.45
TTC28-201ENST00000397906 CPB1P15086 417 aa12.25□□□□□ -0.45
TTC28-201ENST00000397906 ARHGAP24Q8N264 748 aa12.25□□□□□ -0.45
TTC28-201ENST00000397906 ABCD1P33897 745 aa12.25□□□□□ -0.45
TTC28-201ENST00000397906 DHTKD1Q96HY7 919 aaPredicted RBP12.25□□□□□ -0.45
TTC28-201ENST00000397906 GSDMAQ96QA5 445 aa12.25□□□□□ -0.45
TTC28-201ENST00000397906 GPBP1L1Q9HC44 474 aaPredicted RBP12.25□□□□□ -0.45
TTC28-201ENST00000397906 GABBR1Q9UBS5 961 aa12.25□□□□□ -0.45
TTC28-201ENST00000397906 CRB1P82279 1406 aa12.25□□□□□ -0.45
TTC28-201ENST00000397906 MAPK6Q16659 721 aa12.25□□□□□ -0.45
TTC28-201ENST00000397906 CERKQ8TCT0 537 aa12.25□□□□□ -0.45
TTC28-201ENST00000397906 TSC1Q92574 1164 aa12.25□□□□□ -0.45
TTC28-201ENST00000397906 TSPY1Q01534 308 aa12.25□□□□□ -0.45
TTC28-201ENST00000397906 NSUN2Q08J23 767 aaKnown RBP eCLIP12.25□□□□□ -0.45
TTC28-201ENST00000397906 RPGRIP1Q96KN7 1286 aa12.25□□□□□ -0.45
TTC28-201ENST00000397906 STAP2Q9UGK3 403 aa12.25□□□□□ -0.45
TTC28-201ENST00000397906 CDK12Q9NYV4 1490 aaPredicted RBP12.25□□□□□ -0.45
TTC28-201ENST00000397906 KIF23Q02241 960 aaPredicted RBP12.25□□□□□ -0.45
TTC28-201ENST00000397906 STK17AQ9UEE5 414 aa12.25□□□□□ -0.45
TTC28-201ENST00000397906 BAG5Q9UL15 447 aa12.25□□□□□ -0.45
TTC28-201ENST00000397906 RNF40O75150 1001 aa12.25□□□□□ -0.45
TTC28-201ENST00000397906 MOCS3O95396 460 aa12.25□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms