RNA–Protein interactions for RNA: ENST00000397545.8

CCDC40-204, Transcript of coiled-coil domain containing 40, humanhuman

APPRIS P3 TSL 5 BASIC

Gene CCDC40, Length 4,294 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-204ENST00000397545 FMO2Q99518 471 aa11.68□□□□□ -0.54
CCDC40-204ENST00000397545 PLAAQ9Y263 795 aa11.68□□□□□ -0.54
CCDC40-204ENST00000397545 XIRP1Q702N8 1843 aaKnown RBP11.68□□□□□ -0.54
CCDC40-204ENST00000397545 CLRN2A0PK11 232 aa11.68□□□□□ -0.54
CCDC40-204ENST00000397545 PPIP5K2O43314 1243 aa11.68□□□□□ -0.54
CCDC40-204ENST00000397545 SUN1O94901 812 aa11.68□□□□□ -0.54
CCDC40-204ENST00000397545 NSFP46459 744 aaKnown RBP11.68□□□□□ -0.54
CCDC40-204ENST00000397545 CDK8P49336 464 aa11.68□□□□□ -0.54
CCDC40-204ENST00000397545 GPATCH4Q5T3I0 446 aaKnown RBP11.68□□□□□ -0.54
CCDC40-204ENST00000397545 LINC00116Q8NCU8 138 aa11.68□□□□□ -0.54
CCDC40-204ENST00000397545 PIGOQ8TEQ8 1089 aa11.68□□□□□ -0.54
CCDC40-204ENST00000397545 TMEM47Q9BQJ4 181 aa11.68□□□□□ -0.54
CCDC40-204ENST00000397545 DDX47Q9H0S4 455 aaKnown RBP11.68□□□□□ -0.54
CCDC40-204ENST00000397545 MLXIPLQ9NP71 852 aa11.68□□□□□ -0.54
CCDC40-204ENST00000397545 UBE2TQ9NPD8 197 aaPredicted RBP11.68□□□□□ -0.54
CCDC40-204ENST00000397545 FAM114A2Q9NRY5 505 aa11.68□□□□□ -0.54
CCDC40-204ENST00000397545 TFR2Q9UP52 801 aa11.68□□□□□ -0.54
CCDC40-204ENST00000397545 STK24Q9Y6E0 443 aa11.68□□□□□ -0.54
CCDC40-204ENST00000397545 SEMA3EO15041 775 aa11.67□□□□□ -0.54
CCDC40-204ENST00000397545 ACSL3O95573 720 aa11.67□□□□□ -0.54
CCDC40-204ENST00000397545 TTLL1O95922 423 aa11.67□□□□□ -0.54
CCDC40-204ENST00000397545 CACNB3P54284 484 aa11.67□□□□□ -0.54
CCDC40-204ENST00000397545 BFSP1Q12934 665 aa11.67□□□□□ -0.54
CCDC40-204ENST00000397545 ABCB5Q2M3G0 1257 aa11.67□□□□□ -0.54
CCDC40-204ENST00000397545 ASPRV1Q53RT3 343 aa11.67□□□□□ -0.54
CCDC40-204ENST00000397545 CEP128Q6ZU80 1094 aa11.67□□□□□ -0.54
CCDC40-204ENST00000397545 SMC1BQ8NDV3 1235 aa11.67□□□□□ -0.54
CCDC40-204ENST00000397545 GDAP1Q8TB36 358 aa11.67□□□□□ -0.54
CCDC40-204ENST00000397545 RAB3IL1Q8TBN0 382 aa11.67□□□□□ -0.54
CCDC40-204ENST00000397545 MAIP1Q8WWC4 291 aa11.67□□□□□ -0.54
CCDC40-204ENST00000397545 PICK1Q9NRD5 415 aa11.67□□□□□ -0.54
CCDC40-204ENST00000397545 RAB20Q9NX57 234 aa11.67□□□□□ -0.54
CCDC40-204ENST00000397545 TMEM260Q9NX78 707 aa11.67□□□□□ -0.54
CCDC40-204ENST00000397545 FBXO2Q9UK22 296 aaPredicted RBP11.67□□□□□ -0.54
CCDC40-204ENST00000397545 ODF2LQ9ULJ1 636 aa11.67□□□□□ -0.54
CCDC40-204ENST00000397545 TJP1Q07157 1748 aa11.67□□□□□ -0.54
CCDC40-204ENST00000397545 LRRIQ4A6NIV6 560 aa11.67□□□□□ -0.54
CCDC40-204ENST00000397545 USP17L15C9J2P7 530 aa11.67□□□□□ -0.54
CCDC40-204ENST00000397545 USP17L13C9JLJ4 530 aa11.67□□□□□ -0.54
CCDC40-204ENST00000397545 USP17L11C9JVI0 530 aa11.67□□□□□ -0.54
CCDC40-204ENST00000397545 USP17L18D6R9N7 530 aa11.67□□□□□ -0.54
CCDC40-204ENST00000397545 USP17L22D6RA61 530 aa11.67□□□□□ -0.54
CCDC40-204ENST00000397545 USP17L17D6RBQ6 530 aa11.67□□□□□ -0.54
CCDC40-204ENST00000397545 USP17L19D6RCP7 530 aa11.67□□□□□ -0.54
CCDC40-204ENST00000397545 USP17L20D6RJB6 530 aa11.67□□□□□ -0.54
CCDC40-204ENST00000397545 HNRNPDLO14979 420 aaKnown RBP11.67□□□□□ -0.54
CCDC40-204ENST00000397545 USP17L24Q0WX57 530 aa11.67□□□□□ -0.54
CCDC40-204ENST00000397545 SGO2Q562F6 1265 aa11.67□□□□□ -0.54
CCDC40-204ENST00000397545 USP17L6PQ6QN14 398 aa11.67□□□□□ -0.54
CCDC40-204ENST00000397545 TMC4Q7Z404 712 aa11.67□□□□□ -0.54
CCDC40-204ENST00000397545 TBC1D1Q86TI0 1168 aaPredicted RBP11.67□□□□□ -0.54
CCDC40-204ENST00000397545 IGDCC4Q8TDY8 1250 aa11.67□□□□□ -0.54
CCDC40-204ENST00000397545 ANKFY1Q9P2R3 1169 aa11.67□□□□□ -0.54
CCDC40-204ENST00000397545 GOLGA8IPA6NC78 632 aa11.67□□□□□ -0.54
CCDC40-204ENST00000397545 GOLGA8JA6NMD2 632 aa11.67□□□□□ -0.54
CCDC40-204ENST00000397545 FAM196BA6NMK8 535 aa11.67□□□□□ -0.54
CCDC40-204ENST00000397545 E9PMD0 336 aa11.67□□□□□ -0.54
CCDC40-204ENST00000397545 ZBED4O75132 1171 aa11.67□□□□□ -0.54
CCDC40-204ENST00000397545 MYL1P05976 194 aa11.67□□□□□ -0.54
CCDC40-204ENST00000397545 PFKFB3Q16875 520 aaPredicted RBP11.67□□□□□ -0.54
CCDC40-204ENST00000397545 ALS2CLQ60I27 953 aa11.67□□□□□ -0.54
CCDC40-204ENST00000397545 TBC1D9BQ66K14 1250 aa11.67□□□□□ -0.54
CCDC40-204ENST00000397545 ARHGAP27Q6ZUM4 889 aa11.67□□□□□ -0.54
CCDC40-204ENST00000397545 ADGRA1Q86SQ6 560 aa11.67□□□□□ -0.54
CCDC40-204ENST00000397545 TADA2BQ86TJ2 420 aa11.67□□□□□ -0.54
CCDC40-204ENST00000397545 DGKHQ86XP1 1220 aa11.67□□□□□ -0.54
CCDC40-204ENST00000397545 CFAP61Q8NHU2 1237 aa11.67□□□□□ -0.54
CCDC40-204ENST00000397545 SH3RF3Q8TEJ3 882 aaPredicted RBP11.67□□□□□ -0.54
CCDC40-204ENST00000397545 IWS1Q96ST2 819 aa11.67□□□□□ -0.54
CCDC40-204ENST00000397545 ELAC2Q9BQ52 826 aaKnown RBP11.67□□□□□ -0.54
CCDC40-204ENST00000397545 DBNDD1Q9H9R9 158 aa11.67□□□□□ -0.54
CCDC40-204ENST00000397545 WDR91A4D1P6 747 aa11.66□□□□□ -0.54
CCDC40-204ENST00000397545 KLRK1P26718 216 aa11.66□□□□□ -0.54
CCDC40-204ENST00000397545 RASSF2P50749 326 aa11.66□□□□□ -0.54
CCDC40-204ENST00000397545 CCDC14Q49A88 953 aa11.66□□□□□ -0.54
CCDC40-204ENST00000397545 TTBK2Q6IQ55 1244 aa11.66□□□□□ -0.54
CCDC40-204ENST00000397545 TC2NQ8N9U0 490 aa11.66□□□□□ -0.54
CCDC40-204ENST00000397545 RNF34Q969K3 372 aa11.66□□□□□ -0.54
CCDC40-204ENST00000397545 VTI1AQ96AJ9 217 aa11.66□□□□□ -0.54
CCDC40-204ENST00000397545 ZNF512BQ96KM6 892 aaPredicted RBP11.66□□□□□ -0.54
CCDC40-204ENST00000397545 MMS19Q96T76 1030 aa11.66□□□□□ -0.54
CCDC40-204ENST00000397545 TEKT3Q9BXF9 490 aa11.66□□□□□ -0.54
CCDC40-204ENST00000397545 CPSF2Q9P2I0 782 aaKnown RBP11.66□□□□□ -0.54
CCDC40-204ENST00000397545 MAGEA9P43362 315 aa11.66□□□□□ -0.54
CCDC40-204ENST00000397545 ZNF211Q13398 564 aaPredicted RBP11.66□□□□□ -0.54
CCDC40-204ENST00000397545 CTTNQ14247 550 aaKnown RBP11.66□□□□□ -0.54
CCDC40-204ENST00000397545 SGMS1Q86VZ5 419 aa11.66□□□□□ -0.54
CCDC40-204ENST00000397545 STAG2Q8N3U4 1231 aa11.66□□□□□ -0.54
CCDC40-204ENST00000397545 LRRC8CQ8TDW0 803 aa11.66□□□□□ -0.54
CCDC40-204ENST00000397545 DCP1AQ9NPI6 582 aaPredicted RBP11.66□□□□□ -0.54
CCDC40-204ENST00000397545 SMARCAL1Q9NZC9 954 aa11.66□□□□□ -0.54
CCDC40-204ENST00000397545 RNF14Q9UBS8 474 aa11.66□□□□□ -0.54
CCDC40-204ENST00000397545 TOGARAM1Q9Y4F4 1720 aa11.66□□□□□ -0.54
CCDC40-204ENST00000397545 USP17L5A8MUK1 530 aa11.66□□□□□ -0.54
CCDC40-204ENST00000397545 MMP10P09238 476 aa11.66□□□□□ -0.54
CCDC40-204ENST00000397545 MAPK4P31152 587 aa11.66□□□□□ -0.54
CCDC40-204ENST00000397545 USP14P54578 494 aa11.66□□□□□ -0.54
CCDC40-204ENST00000397545 LRRC63Q05C16 580 aa11.66□□□□□ -0.54
CCDC40-204ENST00000397545 FAM83BQ5T0W9 1011 aa11.66□□□□□ -0.54
CCDC40-204ENST00000397545 LGSNQ5TDP6 509 aa11.66□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms