RNA–Protein interactions for RNA: ENST00000396386.6

CBX3-202, Transcript of chromobox 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CBX3, Length 1,857 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CBX3-202ENST00000396386 SPP2Q13103 211 aa16.52■□□□□ 0.23
CBX3-202ENST00000396386 NAA30Q147X3 362 aaPredicted RBP16.52■□□□□ 0.23
CBX3-202ENST00000396386 MUM1L1Q5H9M0 696 aa16.52■□□□□ 0.23
CBX3-202ENST00000396386 PCNX4Q63HM2 1172 aa16.52■□□□□ 0.23
CBX3-202ENST00000396386 B3GNT9Q6UX72 402 aa16.52■□□□□ 0.23
CBX3-202ENST00000396386 PDCL2Q8N4E4 241 aa16.52■□□□□ 0.23
CBX3-202ENST00000396386 MNS1Q8NEH6 495 aa16.52■□□□□ 0.23
CBX3-202ENST00000396386 IL31RAQ8NI17 732 aa16.52■□□□□ 0.23
CBX3-202ENST00000396386 SYTL5Q8TDW5 730 aaPredicted RBP16.52■□□□□ 0.23
CBX3-202ENST00000396386 PIGOQ8TEQ8 1089 aa16.52■□□□□ 0.23
CBX3-202ENST00000396386 ZFP91Q96JP5 570 aaPredicted RBP16.52■□□□□ 0.23
CBX3-202ENST00000396386 NACC1Q96RE7 527 aa16.52■□□□□ 0.23
CBX3-202ENST00000396386 MMRN2Q9H8L6 949 aa16.52■□□□□ 0.23
CBX3-202ENST00000396386 OLFML3Q9NRN5 406 aa16.52■□□□□ 0.23
CBX3-202ENST00000396386 HOMER2Q9NSB8 354 aa16.52■□□□□ 0.23
CBX3-202ENST00000396386 TRAF3IP3Q9Y228 551 aa16.52■□□□□ 0.23
CBX3-202ENST00000396386 CETN3O15182 167 aa16.51■□□□□ 0.23
CBX3-202ENST00000396386 CALUO43852 315 aaPredicted RBP16.51■□□□□ 0.23
CBX3-202ENST00000396386 MYBP10242 640 aa16.51■□□□□ 0.23
CBX3-202ENST00000396386 ITGB5P18084 799 aa16.51■□□□□ 0.23
CBX3-202ENST00000396386 ARHGAP25P42331 645 aa16.51■□□□□ 0.23
CBX3-202ENST00000396386 BACE1P56817 501 aa16.51■□□□□ 0.23
CBX3-202ENST00000396386 KNOP1Q1ED39 458 aaKnown RBP16.51■□□□□ 0.23
CBX3-202ENST00000396386 TRIM59Q8IWR1 403 aa16.51■□□□□ 0.23
CBX3-202ENST00000396386 CCDC170Q8IYT3 715 aa16.51■□□□□ 0.23
CBX3-202ENST00000396386 NEK11Q8NG66 645 aa16.51■□□□□ 0.23
CBX3-202ENST00000396386 TRPM4Q8TD43 1214 aa16.51■□□□□ 0.23
CBX3-202ENST00000396386 FAM207AQ9NSI2 230 aaPredicted RBP16.51■□□□□ 0.23
CBX3-202ENST00000396386 CGNQ9P2M7 1197 aaKnown RBP16.51■□□□□ 0.23
CBX3-202ENST00000396386 MYO1AQ9UBC5 1043 aa16.51■□□□□ 0.23
CBX3-202ENST00000396386 NOL12Q9UGY1 213 aaKnown RBP eCLIP16.51■□□□□ 0.23
CBX3-202ENST00000396386 PPP2R3BQ9Y5P8 575 aa16.51■□□□□ 0.23
CBX3-202ENST00000396386 UBIAD1Q9Y5Z9 338 aa16.51■□□□□ 0.23
CBX3-202ENST00000396386 V9GYY5 206 aaPredicted RBP16.51■□□□□ 0.23
CBX3-202ENST00000396386 NR2F2P24468 414 aa16.5■□□□□ 0.23
CBX3-202ENST00000396386 KRT83P78385 493 aa16.5■□□□□ 0.23
CBX3-202ENST00000396386 ADAM9Q13443 819 aa16.5■□□□□ 0.23
CBX3-202ENST00000396386 ELF2Q15723 593 aa16.5■□□□□ 0.23
CBX3-202ENST00000396386 ZNF569Q5MCW4 686 aa16.5■□□□□ 0.23
CBX3-202ENST00000396386 ZNF280CQ8ND82 737 aa16.5■□□□□ 0.23
CBX3-202ENST00000396386 LXNQ9BS40 222 aa16.5■□□□□ 0.23
CBX3-202ENST00000396386 IRX2Q9BZI1 471 aaPredicted RBP16.5■□□□□ 0.23
CBX3-202ENST00000396386 EDEM3Q9BZQ6 932 aa16.5■□□□□ 0.23
CBX3-202ENST00000396386 TYW1Q9NV66 732 aaKnown RBP16.5■□□□□ 0.23
CBX3-202ENST00000396386 GPRC5DQ9NZD1 345 aa16.5■□□□□ 0.23
CBX3-202ENST00000396386 KCND2Q9NZV8 630 aa16.5■□□□□ 0.23
CBX3-202ENST00000396386 FAM184BQ9ULE4 1060 aa16.5■□□□□ 0.23
CBX3-202ENST00000396386 REXO2Q9Y3B8 237 aaKnown RBP16.5■□□□□ 0.23
CBX3-202ENST00000396386 MRFAP1Q9Y605 127 aa16.5■□□□□ 0.23
CBX3-202ENST00000396386 SSC5DA1L4H1 1573 aa16.5■□□□□ 0.23
CBX3-202ENST00000396386 SBF1O95248 1867 aa16.5■□□□□ 0.23
CBX3-202ENST00000396386 PDXKO00764 312 aa16.5■□□□□ 0.23
CBX3-202ENST00000396386 EIF3DO15371 548 aaKnown RBP eCLIP16.5■□□□□ 0.23
CBX3-202ENST00000396386 IPO7O95373 1038 aaKnown RBP16.5■□□□□ 0.23
CBX3-202ENST00000396386 GCNT3O95395 438 aa16.5■□□□□ 0.23
CBX3-202ENST00000396386 PTPRAP18433 802 aa16.5■□□□□ 0.23
CBX3-202ENST00000396386 HNRNPH3P31942 346 aaKnown RBP16.5■□□□□ 0.23
CBX3-202ENST00000396386 MAP3K9P80192 1104 aa16.5■□□□□ 0.23
CBX3-202ENST00000396386 TKFCQ3LXA3 575 aa16.5■□□□□ 0.23
CBX3-202ENST00000396386 C1orf186Q6ZWK4 172 aa16.5■□□□□ 0.23
CBX3-202ENST00000396386 MIER3Q7Z3K6 550 aa16.5■□□□□ 0.23
CBX3-202ENST00000396386 ATG4CQ96DT6 458 aa16.5■□□□□ 0.23
CBX3-202ENST00000396386 C12orf42Q96LP6 360 aa16.5■□□□□ 0.23
CBX3-202ENST00000396386 KCNH7Q9NS40 1196 aa16.5■□□□□ 0.23
CBX3-202ENST00000396386 GGA3Q9NZ52 723 aa16.5■□□□□ 0.23
CBX3-202ENST00000396386 UTP18Q9Y5J1 556 aaKnown RBP eCLIP16.5■□□□□ 0.23
CBX3-202ENST00000396386 UBE4BO95155 1302 aa16.5■□□□□ 0.23
CBX3-202ENST00000396386 EIF3CLB5ME19 914 aaKnown RBP16.49■□□□□ 0.23
CBX3-202ENST00000396386 DDX39AO00148 427 aaKnown RBP16.49■□□□□ 0.23
CBX3-202ENST00000396386 VWA5AO00534 786 aa16.49■□□□□ 0.23
CBX3-202ENST00000396386 EPHB6O15197 1021 aa16.49■□□□□ 0.23
CBX3-202ENST00000396386 PRPF6O94906 941 aaKnown RBP16.49■□□□□ 0.23
CBX3-202ENST00000396386 ERCC3P19447 782 aa16.49■□□□□ 0.23
CBX3-202ENST00000396386 HERVK_113P62684 666 aa16.49■□□□□ 0.23
CBX3-202ENST00000396386 ARHGAP27Q6ZUM4 889 aa16.49■□□□□ 0.23
CBX3-202ENST00000396386 LRRN4CLQ8ND94 238 aa16.49■□□□□ 0.23
CBX3-202ENST00000396386 ZKSCAN4Q969J2 545 aaPredicted RBP16.49■□□□□ 0.23
CBX3-202ENST00000396386 TRERF1Q96PN7 1200 aa16.49■□□□□ 0.23
CBX3-202ENST00000396386 EIF3CQ99613 913 aaKnown RBP16.49■□□□□ 0.23
CBX3-202ENST00000396386 HAUS4Q9H6D7 363 aa16.49■□□□□ 0.23
CBX3-202ENST00000396386 NHEJ1Q9H9Q4 299 aaPredicted RBP16.49■□□□□ 0.23
CBX3-202ENST00000396386 AGO4Q9HCK5 861 aaKnown RBP16.49■□□□□ 0.23
CBX3-202ENST00000396386 JADE2Q9NQC1 790 aa16.49■□□□□ 0.23
CBX3-202ENST00000396386 PKD2L1Q9P0L9 805 aa16.49■□□□□ 0.23
CBX3-202ENST00000396386 SEL1LQ9UBV2 794 aa16.49■□□□□ 0.23
CBX3-202ENST00000396386 ODF2LQ9ULJ1 636 aa16.49■□□□□ 0.23
CBX3-202ENST00000396386 PAPPA2Q9BXP8 1791 aa16.49■□□□□ 0.23
CBX3-202ENST00000396386 ARHGEF35A5YM69 484 aa16.48■□□□□ 0.23
CBX3-202ENST00000396386 EIF2AK2P19525 551 aaKnown RBP16.48■□□□□ 0.23
CBX3-202ENST00000396386 HOXD13P35453 343 aa16.48■□□□□ 0.23
CBX3-202ENST00000396386 EPS15P42566 896 aa16.48■□□□□ 0.23
CBX3-202ENST00000396386 RPS6P62753 249 aaKnown RBP16.48■□□□□ 0.23
CBX3-202ENST00000396386 MTMR1Q13613 665 aa16.48■□□□□ 0.23
CBX3-202ENST00000396386 PGM5Q15124 567 aa16.48■□□□□ 0.23
CBX3-202ENST00000396386 KIAA1328Q86T90 577 aa16.48■□□□□ 0.23
CBX3-202ENST00000396386 GPC2Q8N158 579 aa16.48■□□□□ 0.23
CBX3-202ENST00000396386 SLC35F6Q8N357 371 aa16.48■□□□□ 0.23
CBX3-202ENST00000396386 BANK1Q8NDB2 785 aa16.48■□□□□ 0.23
CBX3-202ENST00000396386 SMCR8Q8TEV9 937 aaPredicted RBP16.48■□□□□ 0.23
CBX3-202ENST00000396386 CARD6Q9BX69 1037 aa16.48■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms