RNA–Protein interactions for RNA: ENST00000395066.7

CLK3-202, Transcript of CDC like kinase 3, humanhuman

TSL 1 (best) BASIC

Gene CLK3, Length 2,621 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-202ENST00000395066 GRID2IPA4D2P6 1211 aa22.64■■□□□ 1.22
CLK3-202ENST00000395066 HSF2BPO75031 334 aa22.64■■□□□ 1.22
CLK3-202ENST00000395066 DDR1Q08345 913 aa22.64■■□□□ 1.22
CLK3-202ENST00000395066 PPP1R18Q6NYC8 613 aa22.64■■□□□ 1.22
CLK3-202ENST00000395066 CDC42EP5Q6NZY7 148 aa22.64■■□□□ 1.22
CLK3-202ENST00000395066 RNF10Q8N5U6 811 aaKnown RBP22.64■■□□□ 1.22
CLK3-202ENST00000395066 ANO3Q9BYT9 981 aa22.64■■□□□ 1.22
CLK3-202ENST00000395066 EDEM3Q9BZQ6 932 aa22.64■■□□□ 1.22
CLK3-202ENST00000395066 FOCADQ5VW36 1801 aa22.64■■□□□ 1.21
CLK3-202ENST00000395066 GUCY2CP25092 1073 aa22.64■■□□□ 1.21
CLK3-202ENST00000395066 PTK2Q05397 1052 aa22.64■■□□□ 1.21
CLK3-202ENST00000395066 ASIC2Q16515 512 aa22.64■■□□□ 1.21
CLK3-202ENST00000395066 MMS22LQ6ZRQ5 1243 aa22.64■■□□□ 1.21
CLK3-202ENST00000395066 KLHL7Q8IXQ5 586 aa22.64■■□□□ 1.21
CLK3-202ENST00000395066 CAVIN3Q969G5 261 aa22.64■■□□□ 1.21
CLK3-202ENST00000395066 CEP63Q96MT8 703 aa22.64■■□□□ 1.21
CLK3-202ENST00000395066 CCDC43Q96MW1 224 aaKnown RBP22.64■■□□□ 1.21
CLK3-202ENST00000395066 DNAJC18Q9H819 358 aa22.64■■□□□ 1.21
CLK3-202ENST00000395066 MYH4Q9Y623 1939 aa22.64■■□□□ 1.21
CLK3-202ENST00000395066 RSPH10B2B2RC85 870 aa22.63■■□□□ 1.21
CLK3-202ENST00000395066 RSPH10BP0C881 870 aa22.63■■□□□ 1.21
CLK3-202ENST00000395066 ATP1A2P50993 1020 aa22.63■■□□□ 1.21
CLK3-202ENST00000395066 SLC12A3P55017 1021 aa22.63■■□□□ 1.21
CLK3-202ENST00000395066 HYIQ5T013 277 aa22.63■■□□□ 1.21
CLK3-202ENST00000395066 CATSPER3Q86XQ3 398 aa22.63■■□□□ 1.21
CLK3-202ENST00000395066 SUGP1Q8IWZ8 645 aaKnown RBP22.63■■□□□ 1.21
CLK3-202ENST00000395066 HDAC9Q9UKV0 1011 aa22.63■■□□□ 1.21
CLK3-202ENST00000395066 KDM3AQ9Y4C1 1321 aa22.63■■□□□ 1.21
CLK3-202ENST00000395066 BBOX1O75936 387 aa22.63■■□□□ 1.21
CLK3-202ENST00000395066 TNFRSF8P28908 595 aa22.63■■□□□ 1.21
CLK3-202ENST00000395066 SKOR1P84550 965 aa22.63■■□□□ 1.21
CLK3-202ENST00000395066 CYP4A11Q02928 519 aa22.63■■□□□ 1.21
CLK3-202ENST00000395066 USH1GQ495M9 461 aa22.63■■□□□ 1.21
CLK3-202ENST00000395066 DCAF17Q5H9S7 520 aaPredicted RBP22.63■■□□□ 1.21
CLK3-202ENST00000395066 KCNMB3Q9NPA1 279 aa22.63■■□□□ 1.21
CLK3-202ENST00000395066 KCNQ5Q9NR82 932 aa22.63■■□□□ 1.21
CLK3-202ENST00000395066 MYBP10242 640 aa22.62■■□□□ 1.21
CLK3-202ENST00000395066 HOXD13P35453 343 aa22.62■■□□□ 1.21
CLK3-202ENST00000395066 GPATCH4Q5T3I0 446 aaKnown RBP22.62■■□□□ 1.21
CLK3-202ENST00000395066 MEI1Q5TIA1 1274 aa22.62■■□□□ 1.21
CLK3-202ENST00000395066 ZNF571Q7Z3V5 609 aaPredicted RBP22.62■■□□□ 1.21
CLK3-202ENST00000395066 SFR1Q86XK3 245 aa22.62■■□□□ 1.21
CLK3-202ENST00000395066 DHX36Q9H2U1 1008 aaKnown RBP22.62■■□□□ 1.21
CLK3-202ENST00000395066 AJAP1Q9UKB5 411 aaPredicted RBP22.62■■□□□ 1.21
CLK3-202ENST00000395066 GCFC2P16383 781 aaKnown RBP22.62■■□□□ 1.21
CLK3-202ENST00000395066 KCNA1Q09470 495 aa22.62■■□□□ 1.21
CLK3-202ENST00000395066 SEPT2Q15019 361 aa22.62■■□□□ 1.21
CLK3-202ENST00000395066 CDC37Q16543 378 aaPredicted RBP22.62■■□□□ 1.21
CLK3-202ENST00000395066 CASKIN2Q8WXE0 1202 aa22.62■■□□□ 1.21
CLK3-202ENST00000395066 EEF2P13639 858 aaKnown RBP22.61■■□□□ 1.21
CLK3-202ENST00000395066 SF3B2Q13435 895 aaKnown RBP22.61■■□□□ 1.21
CLK3-202ENST00000395066 GJB7Q6PEY0 223 aa22.61■■□□□ 1.21
CLK3-202ENST00000395066 SYN2Q92777 582 aaPredicted RBP22.61■■□□□ 1.21
CLK3-202ENST00000395066 INPP4AQ96PE3 977 aaPredicted RBP22.61■■□□□ 1.21
CLK3-202ENST00000395066 REEP2Q9BRK0 252 aa22.61■■□□□ 1.21
CLK3-202ENST00000395066 YY1AP1Q9H869 796 aa22.61■■□□□ 1.21
CLK3-202ENST00000395066 USP21Q9UK80 565 aa22.61■■□□□ 1.21
CLK3-202ENST00000395066 PDCLQ13371 301 aa22.61■■□□□ 1.21
CLK3-202ENST00000395066 KAT2BQ92831 832 aa22.61■■□□□ 1.21
CLK3-202ENST00000395066 PCDHGC5Q9Y5F6 944 aa22.61■■□□□ 1.21
CLK3-202ENST00000395066 A6NNZ2 444 aa22.61■■□□□ 1.21
CLK3-202ENST00000395066 SFI1A8K8P3 1242 aa22.61■■□□□ 1.21
CLK3-202ENST00000395066 KCNK3O14649 394 aa22.61■■□□□ 1.21
CLK3-202ENST00000395066 MEIS2O14770 477 aa22.61■■□□□ 1.21
CLK3-202ENST00000395066 CETN3O15182 167 aa22.61■■□□□ 1.21
CLK3-202ENST00000395066 RAD51CO43502 376 aa22.61■■□□□ 1.21
CLK3-202ENST00000395066 CASP4P49662 377 aa22.61■■□□□ 1.21
CLK3-202ENST00000395066 TUBB8Q3ZCM7 444 aa22.61■■□□□ 1.21
CLK3-202ENST00000395066 TCERG1LQ5VWI1 586 aa22.61■■□□□ 1.21
CLK3-202ENST00000395066 CYP2W1Q8TAV3 490 aa22.61■■□□□ 1.21
CLK3-202ENST00000395066 GDF3Q9NR23 364 aa22.61■■□□□ 1.21
CLK3-202ENST00000395066 PPEF1O14829 653 aaPredicted RBP22.6■■□□□ 1.21
CLK3-202ENST00000395066 IRX3P78415 501 aaPredicted RBP22.6■■□□□ 1.21
CLK3-202ENST00000395066 GIT2Q14161 759 aa22.6■■□□□ 1.21
CLK3-202ENST00000395066 IFT20Q8IY31 132 aa22.6■■□□□ 1.21
CLK3-202ENST00000395066 RBM46Q8TBY0 533 aaKnown RBP22.6■■□□□ 1.21
CLK3-202ENST00000395066 NUCKS1Q9H1E3 243 aaKnown RBP22.6■■□□□ 1.21
CLK3-202ENST00000395066 AIPL1Q9NZN9 384 aa22.6■■□□□ 1.21
CLK3-202ENST00000395066 SAMM50Q9Y512 469 aa22.6■■□□□ 1.21
CLK3-202ENST00000395066 ZNF233A6NK53 670 aa22.6■■□□□ 1.21
CLK3-202ENST00000395066 CLIC2O15247 247 aa22.6■■□□□ 1.21
CLK3-202ENST00000395066 GNA14O95837 355 aa22.6■■□□□ 1.21
CLK3-202ENST00000395066 POLD1P28340 1107 aa22.6■■□□□ 1.21
CLK3-202ENST00000395066 MARSP56192 900 aaKnown RBP22.6■■□□□ 1.21
CLK3-202ENST00000395066 SPIRE1Q08AE8 756 aa22.6■■□□□ 1.21
CLK3-202ENST00000395066 NNTQ13423 1086 aa22.6■■□□□ 1.21
CLK3-202ENST00000395066 GLE1Q53GS7 698 aaKnown RBP22.6■■□□□ 1.21
CLK3-202ENST00000395066 APOBEC3HQ6NTF7 200 aaKnown RBP22.6■■□□□ 1.21
CLK3-202ENST00000395066 SPAG5Q96R06 1193 aa22.6■■□□□ 1.21
CLK3-202ENST00000395066 SWAP70Q9UH65 585 aa22.6■■□□□ 1.21
CLK3-202ENST00000395066 ARHGAP4P98171 946 aa22.59■■□□□ 1.21
CLK3-202ENST00000395066 DPY19L2P1Q6NXN4 242 aa22.59■■□□□ 1.21
CLK3-202ENST00000395066 IRF2BP2Q7Z5L9 587 aa22.59■■□□□ 1.21
CLK3-202ENST00000395066 TSKSQ9UJT2 592 aa22.59■■□□□ 1.21
CLK3-202ENST00000395066 FAM86B1E9PN63 330 aa22.59■■□□□ 1.21
CLK3-202ENST00000395066 AKAP3O75969 853 aa22.59■■□□□ 1.21
CLK3-202ENST00000395066 FAM86B2P0C5J1 330 aa22.59■■□□□ 1.21
CLK3-202ENST00000395066 SPATA31C1P0DKV0 1188 aa22.59■■□□□ 1.21
CLK3-202ENST00000395066 UCHL3P15374 230 aa22.59■■□□□ 1.21
CLK3-202ENST00000395066 INPP5BP32019 993 aa22.59■■□□□ 1.21
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms