RNA–Protein interactions for RNA: ENST00000381150.5

SDC1-202, Transcript of syndecan 1, humanhuman

APPRIS P1 TSL 5 BASIC

Gene SDC1, Length 3,291 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-202ENST00000381150 CAVIN3Q969G5 261 aa15.16■□□□□ 0.02
SDC1-202ENST00000381150 CDK5RAP3Q96JB5 506 aa15.16■□□□□ 0.02
SDC1-202ENST00000381150 CRAMP1Q96RY5 1269 aa15.16■□□□□ 0.02
SDC1-202ENST00000381150 FAM167BQ9BTA0 163 aa15.16■□□□□ 0.02
SDC1-202ENST00000381150 MYH10P35580 1976 aa15.16■□□□□ 0.02
SDC1-202ENST00000381150 CCNE1P24864 410 aa15.16■□□□□ 0.02
SDC1-202ENST00000381150 KLRC1P26715 233 aa15.16■□□□□ 0.02
SDC1-202ENST00000381150 LONP1P36776 959 aaKnown RBP15.16■□□□□ 0.02
SDC1-202ENST00000381150 SARNPP82979 210 aaKnown RBP15.16■□□□□ 0.02
SDC1-202ENST00000381150 ANKRD20A8PQ5CZ79 823 aa15.16■□□□□ 0.02
SDC1-202ENST00000381150 CABP7Q86V35 215 aa15.16■□□□□ 0.02
SDC1-202ENST00000381150 NSMCE1Q8WV22 266 aa15.16■□□□□ 0.02
SDC1-202ENST00000381150 RAPGEF5Q92565 580 aa15.16■□□□□ 0.02
SDC1-202ENST00000381150 KCNG1Q9UIX4 513 aa15.16■□□□□ 0.02
SDC1-202ENST00000381150 STX8Q9UNK0 236 aa15.16■□□□□ 0.02
SDC1-202ENST00000381150 DAPK3O43293 454 aa15.16■□□□□ 0.02
SDC1-202ENST00000381150 SLCO1A2P46721 670 aa15.16■□□□□ 0.02
SDC1-202ENST00000381150 NAALADL2Q58DX5 795 aa15.16■□□□□ 0.02
SDC1-202ENST00000381150 MFSD14BQ5SR56 506 aa15.16■□□□□ 0.02
SDC1-202ENST00000381150 SPZ1Q9BXG8 430 aa15.16■□□□□ 0.02
SDC1-202ENST00000381150 AMACRQ9UHK6 382 aa15.16■□□□□ 0.02
SDC1-202ENST00000381150 GOLGA8HP0CJ92 632 aa15.15■□□□□ 0.02
SDC1-202ENST00000381150 TXKP42681 527 aa15.15■□□□□ 0.02
SDC1-202ENST00000381150 DHX9Q08211 1270 aaKnown RBP15.15■□□□□ 0.02
SDC1-202ENST00000381150 NBPF9Q3BBW0 867 aa15.15■□□□□ 0.02
SDC1-202ENST00000381150 GALNT17Q6IS24 598 aa15.15■□□□□ 0.02
SDC1-202ENST00000381150 FMNL3Q8IVF7 1028 aa15.15■□□□□ 0.02
SDC1-202ENST00000381150 NELFCDQ8IXH7 590 aa15.15■□□□□ 0.02
SDC1-202ENST00000381150 PROM2Q8N271 834 aa15.15■□□□□ 0.02
SDC1-202ENST00000381150 EYA3Q99504 573 aa15.15■□□□□ 0.02
SDC1-202ENST00000381150 PYM1Q9BRP8 204 aaKnown RBP15.15■□□□□ 0.02
SDC1-202ENST00000381150 PLAGL2Q9UPG8 496 aa15.15■□□□□ 0.02
SDC1-202ENST00000381150 ANKRD31Q8N7Z5 1873 aa15.15■□□□□ 0.02
SDC1-202ENST00000381150 MARCH6O60337 910 aa15.15■□□□□ 0.02
SDC1-202ENST00000381150 CCNT1O60563 726 aaKnown RBP15.15■□□□□ 0.02
SDC1-202ENST00000381150 FLT3P36888 993 aa15.15■□□□□ 0.02
SDC1-202ENST00000381150 VWA3BQ502W6 1294 aa15.15■□□□□ 0.02
SDC1-202ENST00000381150 SLC27A3Q5K4L6 730 aa15.15■□□□□ 0.02
SDC1-202ENST00000381150 FAM228AQ86W67 206 aa15.15■□□□□ 0.02
SDC1-202ENST00000381150 FAM133AQ8N9E0 248 aa15.15■□□□□ 0.02
SDC1-202ENST00000381150 CCDC63Q8NA47 563 aa15.15■□□□□ 0.02
SDC1-202ENST00000381150 ZNF526Q8TF50 670 aaPredicted RBP15.15■□□□□ 0.02
SDC1-202ENST00000381150 PIK3R5Q8WYR1 880 aa15.15■□□□□ 0.02
SDC1-202ENST00000381150 ELAC2Q9BQ52 826 aaKnown RBP15.15■□□□□ 0.02
SDC1-202ENST00000381150 ZMYND12Q9H0C1 365 aa15.15■□□□□ 0.02
SDC1-202ENST00000381150 CNOT8Q9UFF9 292 aaKnown RBP15.15■□□□□ 0.02
SDC1-202ENST00000381150 KLRF2D3W0D1 207 aa15.14■□□□□ 0.01
SDC1-202ENST00000381150 RPS6KA1Q15418 735 aa15.14■□□□□ 0.01
SDC1-202ENST00000381150 SLC9C1Q4G0N8 1177 aa15.14■□□□□ 0.01
SDC1-202ENST00000381150 TRIM68Q6AZZ1 485 aa15.14■□□□□ 0.01
SDC1-202ENST00000381150 RETREG2Q8NC44 543 aa15.14■□□□□ 0.01
SDC1-202ENST00000381150 DYDC1Q8WWB3 177 aa15.14■□□□□ 0.01
SDC1-202ENST00000381150 CELF4Q9BZC1 486 aaKnown RBP15.14■□□□□ 0.01
SDC1-202ENST00000381150 ACTR5Q9H9F9 607 aaPredicted RBP15.14■□□□□ 0.01
SDC1-202ENST00000381150 KIF9Q9HAQ2 790 aa15.14■□□□□ 0.01
SDC1-202ENST00000381150 NOD2Q9HC29 1040 aa15.14■□□□□ 0.01
SDC1-202ENST00000381150 TRAF5O00463 557 aa15.14■□□□□ 0.01
SDC1-202ENST00000381150 TXNRD1Q16881 649 aa15.14■□□□□ 0.01
SDC1-202ENST00000381150 LZTS2Q9BRK4 669 aa15.14■□□□□ 0.01
SDC1-202ENST00000381150 MLXIPLQ9NP71 852 aa15.14■□□□□ 0.01
SDC1-202ENST00000381150 TRPC5Q9UL62 973 aaPredicted RBP15.14■□□□□ 0.01
SDC1-202ENST00000381150 COPB2P35606 906 aa15.14■□□□□ 0.01
SDC1-202ENST00000381150 CCNHP51946 323 aaPredicted RBP15.14■□□□□ 0.01
SDC1-202ENST00000381150 ERVK-9P63128 1117 aa15.14■□□□□ 0.01
SDC1-202ENST00000381150 PPP2R2AP63151 447 aa15.14■□□□□ 0.01
SDC1-202ENST00000381150 GIMAP8Q8ND71 665 aaPredicted RBP15.14■□□□□ 0.01
SDC1-202ENST00000381150 KCNV2Q8TDN2 545 aa15.14■□□□□ 0.01
SDC1-202ENST00000381150 LRRC15Q8TF66 581 aa15.14■□□□□ 0.01
SDC1-202ENST00000381150 TTYH3Q9C0H2 523 aa15.14■□□□□ 0.01
SDC1-202ENST00000381150 YIPF3Q9GZM5 350 aa15.14■□□□□ 0.01
SDC1-202ENST00000381150 PNMA2Q9UL42 364 aa15.14■□□□□ 0.01
SDC1-202ENST00000381150 KRIT1O00522 736 aa15.13■□□□□ 0.01
SDC1-202ENST00000381150 PLCG2P16885 1265 aa15.13■□□□□ 0.01
SDC1-202ENST00000381150 MIIPQ5JXC2 388 aa15.13■□□□□ 0.01
SDC1-202ENST00000381150 RUFY4Q6ZNE9 571 aa15.13■□□□□ 0.01
SDC1-202ENST00000381150 CEP95Q96GE4 821 aa15.13■□□□□ 0.01
SDC1-202ENST00000381150 LSM14BQ9BX40 385 aaKnown RBP15.13■□□□□ 0.01
SDC1-202ENST00000381150 TAF1DQ9H5J8 278 aaPredicted RBP15.13■□□□□ 0.01
SDC1-202ENST00000381150 ZNF287Q9HBT7 754 aa15.13■□□□□ 0.01
SDC1-202ENST00000381150 LUC7LQ9NQ29 371 aaKnown RBP15.13■□□□□ 0.01
SDC1-202ENST00000381150 SMARCA1P28370 1054 aa15.13■□□□□ 0.01
SDC1-202ENST00000381150 SLC8A1P32418 973 aa15.13■□□□□ 0.01
SDC1-202ENST00000381150 KLHL30Q0D2K2 578 aa15.13■□□□□ 0.01
SDC1-202ENST00000381150 MKRN4PQ13434 485 aaPredicted RBP15.13■□□□□ 0.01
SDC1-202ENST00000381150 LLGL1Q15334 1064 aa15.13■□□□□ 0.01
SDC1-202ENST00000381150 KIF2BQ8N4N8 673 aa15.13■□□□□ 0.01
SDC1-202ENST00000381150 WHAMMQ8TF30 809 aa15.13■□□□□ 0.01
SDC1-202ENST00000381150 TBC1D22AQ8WUA7 517 aa15.13■□□□□ 0.01
SDC1-202ENST00000381150 DHTKD1Q96HY7 919 aaPredicted RBP15.13■□□□□ 0.01
SDC1-202ENST00000381150 TMBIM4Q9HC24 238 aa15.13■□□□□ 0.01
SDC1-202ENST00000381150 DAGLAQ9Y4D2 1042 aa15.13■□□□□ 0.01
SDC1-202ENST00000381150 BRWD3Q6RI45 1802 aa15.13■□□□□ 0.01
SDC1-202ENST00000381150 CACNB1Q02641 598 aaPredicted RBP15.12■□□□□ 0.01
SDC1-202ENST00000381150 GABPAQ06546 454 aa15.12■□□□□ 0.01
SDC1-202ENST00000381150 CDC37Q16543 378 aaPredicted RBP15.12■□□□□ 0.01
SDC1-202ENST00000381150 SFMBT2Q5VUG0 894 aa15.12■□□□□ 0.01
SDC1-202ENST00000381150 USP17L2Q6R6M4 530 aa15.12■□□□□ 0.01
SDC1-202ENST00000381150 DAAM2Q86T65 1068 aa15.12■□□□□ 0.01
SDC1-202ENST00000381150 ANKS4BQ8N8V4 417 aa15.12■□□□□ 0.01
SDC1-202ENST00000381150 LRRC45Q96CN5 670 aa15.12■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 39.9 ms