RNA–Protein interactions for RNA: ENST00000378725.3

SSU72-203, Transcript of SSU72 homolog, RNA polymerase II CTD phosphatase, humanhuman

TSL 2

Gene SSU72, Length 619 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSU72-203ENST00000378725 GTF2IRD1Q9UHL9 959 aa21.11■□□□□ 0.97
SSU72-203ENST00000378725 PQBP1O60828 265 aaKnown RBP21.1■□□□□ 0.97
SSU72-203ENST00000378725 ATP4AP20648 1035 aa21.1■□□□□ 0.97
SSU72-203ENST00000378725 PRPHP41219 470 aa21.1■□□□□ 0.97
SSU72-203ENST00000378725 CHMP4BP1P59074 171 aa21.1■□□□□ 0.97
SSU72-203ENST00000378725 FAAP100Q0VG06 881 aa21.1■□□□□ 0.97
SSU72-203ENST00000378725 PKP1Q13835 747 aa21.1■□□□□ 0.97
SSU72-203ENST00000378725 EPHA7Q15375 998 aa21.1■□□□□ 0.97
SSU72-203ENST00000378725 PDXDC2PQ6P474 469 aa21.1■□□□□ 0.97
SSU72-203ENST00000378725 GABBR1Q9UBS5 961 aa21.1■□□□□ 0.97
SSU72-203ENST00000378725 TLR3O15455 904 aaKnown RBP21.09■□□□□ 0.97
SSU72-203ENST00000378725 B4GALT4O60513 344 aa21.09■□□□□ 0.97
SSU72-203ENST00000378725 SMIM10L2AP0DMW4 78 aa21.09■□□□□ 0.97
SSU72-203ENST00000378725 SMIM10L2BP0DMW5 78 aa21.09■□□□□ 0.97
SSU72-203ENST00000378725 MARK3P27448 753 aa21.09■□□□□ 0.97
SSU72-203ENST00000378725 ATP2C1P98194 919 aaPredicted RBP21.09■□□□□ 0.97
SSU72-203ENST00000378725 PLCB4Q15147 1175 aa21.09■□□□□ 0.97
SSU72-203ENST00000378725 FAM47CQ5HY64 1035 aa21.09■□□□□ 0.97
SSU72-203ENST00000378725 GDF6Q6KF10 455 aaPredicted RBP21.09■□□□□ 0.97
SSU72-203ENST00000378725 FAM173BQ6P4H8 233 aa21.09■□□□□ 0.97
SSU72-203ENST00000378725 TRPV6Q9H1D0 765 aa21.09■□□□□ 0.97
SSU72-203ENST00000378725 IGSF9BQ9UPX0 1349 aa21.08■□□□□ 0.97
SSU72-203ENST00000378725 BRD1O95696 1058 aa21.08■□□□□ 0.97
SSU72-203ENST00000378725 BMP15O95972 392 aa21.08■□□□□ 0.97
SSU72-203ENST00000378725 F13A1P00488 732 aa21.08■□□□□ 0.97
SSU72-203ENST00000378725 P4HBP07237 508 aaKnown RBP21.08■□□□□ 0.97
SSU72-203ENST00000378725 TECP42680 631 aa21.08■□□□□ 0.97
SSU72-203ENST00000378725 FXR2P51116 673 aaKnown RBP eCLIP21.08■□□□□ 0.97
SSU72-203ENST00000378725 HIC1Q14526 733 aa21.08■□□□□ 0.97
SSU72-203ENST00000378725 C7orf61Q8IZ16 206 aa21.08■□□□□ 0.97
SSU72-203ENST00000378725 TNPO1Q92973 898 aaKnown RBP21.08■□□□□ 0.97
SSU72-203ENST00000378725 CTAGE1Q96RT6 745 aa21.08■□□□□ 0.97
SSU72-203ENST00000378725 TRMT13Q9NUP7 481 aaKnown RBP21.08■□□□□ 0.97
SSU72-203ENST00000378725 ZDHHC9Q9Y397 364 aa21.08■□□□□ 0.97
SSU72-203ENST00000378725 NR2E3Q9Y5X4 410 aa21.08■□□□□ 0.97
SSU72-203ENST00000378725 NRCAMQ92823 1304 aa21.07■□□□□ 0.96
SSU72-203ENST00000378725 POTEB3A0JP26 581 aa21.07■□□□□ 0.96
SSU72-203ENST00000378725 ZNF862O60290 1169 aa21.07■□□□□ 0.96
SSU72-203ENST00000378725 CLTBP09497 229 aa21.07■□□□□ 0.96
SSU72-203ENST00000378725 DDIT3P35638 169 aa21.07■□□□□ 0.96
SSU72-203ENST00000378725 ANP32AP39687 249 aaKnown RBP21.07■□□□□ 0.96
SSU72-203ENST00000378725 ADAM17P78536 824 aa21.07■□□□□ 0.96
SSU72-203ENST00000378725 PDIA5Q14554 519 aa21.07■□□□□ 0.96
SSU72-203ENST00000378725 SF3A1Q15459 793 aaKnown RBP21.07■□□□□ 0.96
SSU72-203ENST00000378725 IL17AQ16552 155 aa21.07■□□□□ 0.96
SSU72-203ENST00000378725 UGCGQ16739 394 aa21.07■□□□□ 0.96
SSU72-203ENST00000378725 ARL6IP4Q66PJ3 421 aaKnown RBP21.07■□□□□ 0.96
SSU72-203ENST00000378725 NCAPH2Q6IBW4 605 aa21.07■□□□□ 0.96
SSU72-203ENST00000378725 POTEBQ6S5H4 581 aa21.07■□□□□ 0.96
SSU72-203ENST00000378725 ATP8B4Q8TF62 1192 aa21.07■□□□□ 0.96
SSU72-203ENST00000378725 HSD17B14Q9BPX1 270 aa21.07■□□□□ 0.96
SSU72-203ENST00000378725 C17orf102A2RUQ5 167 aa21.06■□□□□ 0.96
SSU72-203ENST00000378725 KIAA0355O15063 1070 aa21.06■□□□□ 0.96
SSU72-203ENST00000378725 HBP1O60381 514 aa21.06■□□□□ 0.96
SSU72-203ENST00000378725 STBD1O95210 358 aa21.06■□□□□ 0.96
SSU72-203ENST00000378725 GNAT1P11488 350 aa21.06■□□□□ 0.96
SSU72-203ENST00000378725 INSRRP14616 1297 aa21.06■□□□□ 0.96
SSU72-203ENST00000378725 PSMC5P62195 406 aa21.06■□□□□ 0.96
SSU72-203ENST00000378725 PTGISQ16647 500 aa21.06■□□□□ 0.96
SSU72-203ENST00000378725 DTHD1Q6ZMT9 781 aa21.06■□□□□ 0.96
SSU72-203ENST00000378725 BBXQ8WY36 941 aaPredicted RBP21.06■□□□□ 0.96
SSU72-203ENST00000378725 ATP6V0A1Q93050 837 aa21.06■□□□□ 0.96
SSU72-203ENST00000378725 PDLIM7Q9NR12 457 aa21.06■□□□□ 0.96
SSU72-203ENST00000378725 SETD4Q9NVD3 440 aa21.06■□□□□ 0.96
SSU72-203ENST00000378725 TBX21Q9UL17 535 aa21.06■□□□□ 0.96
SSU72-203ENST00000378725 CEP131Q9UPN4 1083 aa21.06■□□□□ 0.96
SSU72-203ENST00000378725 CLIC4Q9Y696 253 aa21.06■□□□□ 0.96
SSU72-203ENST00000378725 ALPK3Q96L96 1907 aa21.06■□□□□ 0.96
SSU72-203ENST00000378725 TRIM43BA6NCK2 446 aa21.05■□□□□ 0.96
SSU72-203ENST00000378725 RRN3P2A6NIE6 340 aa21.05■□□□□ 0.96
SSU72-203ENST00000378725 SLITRK3O94933 977 aa21.05■□□□□ 0.96
SSU72-203ENST00000378725 QARSP47897 775 aaKnown RBP21.05■□□□□ 0.96
SSU72-203ENST00000378725 ZNF200P98182 395 aaPredicted RBP21.05■□□□□ 0.96
SSU72-203ENST00000378725 PPFIA1Q13136 1202 aa21.05■□□□□ 0.96
SSU72-203ENST00000378725 PTPAQ15257 358 aa21.05■□□□□ 0.96
SSU72-203ENST00000378725 TMEM266Q2M3C6 531 aa21.05■□□□□ 0.96
SSU72-203ENST00000378725 FOXD4L5Q5VV16 416 aaPredicted RBP21.05■□□□□ 0.96
SSU72-203ENST00000378725 SH3RF1Q7Z6J0 888 aa21.05■□□□□ 0.96
SSU72-203ENST00000378725 IGSF22Q8N9C0 903 aa21.05■□□□□ 0.96
SSU72-203ENST00000378725 BANK1Q8NDB2 785 aa21.05■□□□□ 0.96
SSU72-203ENST00000378725 FOXD4L4Q8WXT5 416 aaPredicted RBP21.05■□□□□ 0.96
SSU72-203ENST00000378725 TRIM43Q96BQ3 446 aaPredicted RBP21.05■□□□□ 0.96
SSU72-203ENST00000378725 FAM167AQ96KS9 214 aa21.05■□□□□ 0.96
SSU72-203ENST00000378725 EIF2AK1Q9BQI3 630 aaKnown RBP21.05■□□□□ 0.96
SSU72-203ENST00000378725 NRBP2Q9NSY0 501 aa21.05■□□□□ 0.96
SSU72-203ENST00000378725 TMEM39AQ9NV64 488 aa21.05■□□□□ 0.96
SSU72-203ENST00000378725 RGL1Q9NZL6 768 aa21.05■□□□□ 0.96
SSU72-203ENST00000378725 TRPC6Q9Y210 931 aa21.05■□□□□ 0.96
SSU72-203ENST00000378725 MORC2Q9Y6X9 1032 aaPredicted RBP21.05■□□□□ 0.96
SSU72-203ENST00000378725 MKI67P46013 3256 aaKnown RBP21.04■□□□□ 0.96
SSU72-203ENST00000378725 POTEMA6NI47 508 aa21.04■□□□□ 0.96
SSU72-203ENST00000378725 DKC1O60832 514 aaKnown RBP eCLIP21.04■□□□□ 0.96
SSU72-203ENST00000378725 GRIK4Q16099 956 aa21.04■□□□□ 0.96
SSU72-203ENST00000378725 ZNF484Q5JVG2 852 aa21.04■□□□□ 0.96
SSU72-203ENST00000378725 MARCH8Q5T0T0 291 aa21.04■□□□□ 0.96
SSU72-203ENST00000378725 C4orf19Q8IY42 314 aa21.04■□□□□ 0.96
SSU72-203ENST00000378725 CKAP2LQ8IYA6 745 aa21.04■□□□□ 0.96
SSU72-203ENST00000378725 NEK9Q8TD19 979 aa21.04■□□□□ 0.96
SSU72-203ENST00000378725 LMBR1Q8WVP7 490 aa21.04■□□□□ 0.96
SSU72-203ENST00000378725 DYDC2Q96IM9 177 aa21.04■□□□□ 0.96
Retrieved 100 of 20,778 RNA–protein pairs in 15 ms