RNA–Protein interactions for RNA: ENST00000377819.9

RTN3-206, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 4,937 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-206ENST00000377819 SIGLEC1Q9BZZ2 1709 aa11.41□□□□□ -0.58
RTN3-206ENST00000377819 LRRIQ3A6PVS8 624 aaPredicted RBP11.41□□□□□ -0.58
RTN3-206ENST00000377819 KPNA7A9QM74 516 aa11.41□□□□□ -0.58
RTN3-206ENST00000377819 MTRF1O75570 445 aaKnown RBP11.41□□□□□ -0.58
RTN3-206ENST00000377819 RPN1P04843 607 aaKnown RBP11.41□□□□□ -0.58
RTN3-206ENST00000377819 NUP62P37198 522 aaPredicted RBP11.41□□□□□ -0.58
RTN3-206ENST00000377819 SLMAPQ14BN4 828 aa11.41□□□□□ -0.58
RTN3-206ENST00000377819 KIAA1755Q5JYT7 1200 aa11.41□□□□□ -0.58
RTN3-206ENST00000377819 GJC2Q5T442 439 aaPredicted RBP11.41□□□□□ -0.58
RTN3-206ENST00000377819 DSTYKQ6XUX3 929 aa11.41□□□□□ -0.58
RTN3-206ENST00000377819 UBE2Q2Q8WVN8 375 aa11.41□□□□□ -0.58
RTN3-206ENST00000377819 TRIM62Q9BVG3 475 aa11.41□□□□□ -0.58
RTN3-206ENST00000377819 MPP6Q9NZW5 540 aa11.41□□□□□ -0.58
RTN3-206ENST00000377819 SLC4A7Q9Y6M7 1214 aa11.41□□□□□ -0.58
RTN3-206ENST00000377819 PRG4Q92954 1404 aaPredicted RBP11.41□□□□□ -0.58
RTN3-206ENST00000377819 KDM2BQ8NHM5 1336 aa11.41□□□□□ -0.58
RTN3-206ENST00000377819 FRMD3A2A2Y4 597 aa11.41□□□□□ -0.58
RTN3-206ENST00000377819 SUPT3HB4E1H0 165 aa11.41□□□□□ -0.58
RTN3-206ENST00000377819 CDH2P19022 906 aaPredicted RBP11.41□□□□□ -0.58
RTN3-206ENST00000377819 NSUN2Q08J23 767 aaKnown RBP eCLIP11.41□□□□□ -0.58
RTN3-206ENST00000377819 NEK8Q86SG6 692 aa11.41□□□□□ -0.58
RTN3-206ENST00000377819 HIPK4Q8NE63 616 aa11.41□□□□□ -0.58
RTN3-206ENST00000377819 PDCD6IPQ8WUM4 868 aaKnown RBP11.41□□□□□ -0.58
RTN3-206ENST00000377819 MRFAP1L1Q96HT8 127 aa11.41□□□□□ -0.58
RTN3-206ENST00000377819 CCNL1Q9UK58 526 aaPredicted RBP11.41□□□□□ -0.58
RTN3-206ENST00000377819 SOX13Q9UN79 622 aa11.41□□□□□ -0.58
RTN3-206ENST00000377819 LZTS3O60299 673 aaPredicted RBP11.41□□□□□ -0.58
RTN3-206ENST00000377819 ECEL1O95672 775 aa11.41□□□□□ -0.58
RTN3-206ENST00000377819 AKAP4Q5JQC9 854 aa11.41□□□□□ -0.58
RTN3-206ENST00000377819 FBXO11Q86XK2 927 aa11.41□□□□□ -0.58
RTN3-206ENST00000377819 SYT2Q8N9I0 419 aaPredicted RBP11.41□□□□□ -0.58
RTN3-206ENST00000377819 ST13P5Q8NFI4 369 aaPredicted RBP11.41□□□□□ -0.58
RTN3-206ENST00000377819 ARMT1Q9H993 441 aa11.41□□□□□ -0.58
RTN3-206ENST00000377819 MSH6P52701 1360 aa11.41□□□□□ -0.58
RTN3-206ENST00000377819 ZFYVE16Q7Z3T8 1539 aa11.4□□□□□ -0.58
RTN3-206ENST00000377819 EYA2O00167 538 aa11.4□□□□□ -0.58
RTN3-206ENST00000377819 TEX28O15482 410 aa11.4□□□□□ -0.58
RTN3-206ENST00000377819 BUB1O43683 1085 aa11.4□□□□□ -0.58
RTN3-206ENST00000377819 RAB14P61106 215 aa11.4□□□□□ -0.58
RTN3-206ENST00000377819 EHHADHQ08426 723 aa11.4□□□□□ -0.58
RTN3-206ENST00000377819 EFHBQ8N7U6 833 aa11.4□□□□□ -0.58
RTN3-206ENST00000377819 GJA10Q969M2 543 aa11.4□□□□□ -0.58
RTN3-206ENST00000377819 SNX21Q969T3 373 aa11.4□□□□□ -0.58
RTN3-206ENST00000377819 CYTH2Q99418 400 aa11.4□□□□□ -0.58
RTN3-206ENST00000377819 APOBEC2Q9Y235 224 aaKnown RBP11.4□□□□□ -0.58
RTN3-206ENST00000377819 TFAMQ00059 246 aaKnown RBP11.4□□□□□ -0.58
RTN3-206ENST00000377819 TFCP2Q12800 502 aa11.4□□□□□ -0.58
RTN3-206ENST00000377819 TMED2Q15363 201 aa11.4□□□□□ -0.58
RTN3-206ENST00000377819 AARS2Q5JTZ9 985 aaKnown RBP11.4□□□□□ -0.58
RTN3-206ENST00000377819 KRT40Q6A162 431 aa11.4□□□□□ -0.58
RTN3-206ENST00000377819 CATSPER3Q86XQ3 398 aa11.4□□□□□ -0.58
RTN3-206ENST00000377819 MAPKAPK5Q8IW41 473 aa11.4□□□□□ -0.58
RTN3-206ENST00000377819 CDHR1Q96JP9 859 aa11.4□□□□□ -0.58
RTN3-206ENST00000377819 TRPV6Q9H1D0 765 aa11.4□□□□□ -0.58
RTN3-206ENST00000377819 AIPL1Q9NZN9 384 aa11.4□□□□□ -0.58
RTN3-206ENST00000377819 WDR17Q8IZU2 1322 aa11.4□□□□□ -0.58
RTN3-206ENST00000377819 EXOC1LA0A1B0GW35 172 aa11.4□□□□□ -0.58
RTN3-206ENST00000377819 NPM3O75607 178 aaKnown RBP11.4□□□□□ -0.58
RTN3-206ENST00000377819 ZNF274Q96GC6 653 aaPredicted RBP11.4□□□□□ -0.58
RTN3-206ENST00000377819 ERBINQ96RT1 1412 aa11.4□□□□□ -0.58
RTN3-206ENST00000377819 TSC22D3Q99576 134 aa11.4□□□□□ -0.58
RTN3-206ENST00000377819 KIAA1107Q9UPP5 1409 aa11.4□□□□□ -0.58
RTN3-206ENST00000377819 TNNQ9UQP3 1299 aa11.4□□□□□ -0.58
RTN3-206ENST00000377819 E9PCH4 1651 aa11.4□□□□□ -0.58
RTN3-206ENST00000377819 IL16Q14005 1332 aa11.4□□□□□ -0.58
RTN3-206ENST00000377819 HNRNPRO43390 633 aaKnown RBP11.4□□□□□ -0.59
RTN3-206ENST00000377819 CEP78Q5JTW2 689 aa11.4□□□□□ -0.59
RTN3-206ENST00000377819 RCSD1Q6JBY9 416 aa11.4□□□□□ -0.59
RTN3-206ENST00000377819 ZNF654Q8IZM8 581 aa11.4□□□□□ -0.59
RTN3-206ENST00000377819 NDEL1Q9GZM8 345 aa11.4□□□□□ -0.59
RTN3-206ENST00000377819 RPAP3Q9H6T3 665 aaPredicted RBP11.4□□□□□ -0.59
RTN3-206ENST00000377819 NFU1Q9UMS0 254 aa11.4□□□□□ -0.59
RTN3-206ENST00000377819 PTPN22Q9Y2R2 807 aa11.4□□□□□ -0.59
RTN3-206ENST00000377819 THRAP3Q9Y2W1 955 aaKnown RBP11.4□□□□□ -0.59
RTN3-206ENST00000377819 FAM170AA1A519 330 aa11.39□□□□□ -0.59
RTN3-206ENST00000377819 E5RI56 91 aa11.39□□□□□ -0.59
RTN3-206ENST00000377819 KRT38O76015 456 aa11.39□□□□□ -0.59
RTN3-206ENST00000377819 MMEP08473 750 aa11.39□□□□□ -0.59
RTN3-206ENST00000377819 HDAC1Q13547 482 aaPredicted RBP11.39□□□□□ -0.59
RTN3-206ENST00000377819 SURF1Q15526 300 aa11.39□□□□□ -0.59
RTN3-206ENST00000377819 PTPROQ16827 1216 aa11.39□□□□□ -0.59
RTN3-206ENST00000377819 KCTD6Q8NC69 237 aa11.39□□□□□ -0.59
RTN3-206ENST00000377819 LARP4BQ92615 738 aaKnown RBP11.39□□□□□ -0.59
RTN3-206ENST00000377819 PBXIP1Q96AQ6 731 aa11.39□□□□□ -0.59
RTN3-206ENST00000377819 FAM129AQ9BZQ8 928 aa11.39□□□□□ -0.59
RTN3-206ENST00000377819 FHDC1Q9C0D6 1143 aaPredicted RBP11.39□□□□□ -0.59
RTN3-206ENST00000377819 KLHL31Q9H511 634 aa11.39□□□□□ -0.59
RTN3-206ENST00000377819 NXF1Q9UBU9 619 aaKnown RBP11.39□□□□□ -0.59
RTN3-206ENST00000377819 CEP152O94986 1710 aa11.39□□□□□ -0.59
RTN3-206ENST00000377819 C5orf58C9J3I9 102 aa11.39□□□□□ -0.59
RTN3-206ENST00000377819 ASAP2O43150 1006 aa11.39□□□□□ -0.59
RTN3-206ENST00000377819 KDM1AO60341 852 aa11.39□□□□□ -0.59
RTN3-206ENST00000377819 KRT1P04264 644 aa11.39□□□□□ -0.59
RTN3-206ENST00000377819 EIF2S1P05198 315 aaKnown RBP11.39□□□□□ -0.59
RTN3-206ENST00000377819 PYGMP11217 842 aa11.39□□□□□ -0.59
RTN3-206ENST00000377819 GUCY2CP25092 1073 aa11.39□□□□□ -0.59
RTN3-206ENST00000377819 S100A5P33763 92 aa11.39□□□□□ -0.59
RTN3-206ENST00000377819 PLTPP55058 493 aa11.39□□□□□ -0.59
RTN3-206ENST00000377819 RASSF7Q02833 373 aa11.39□□□□□ -0.59
RTN3-206ENST00000377819 ADCY1Q08828 1119 aa11.39□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms