RNA–Protein interactions for RNA: ENST00000377797.7

TCOF1-202, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene TCOF1, Length 5,095 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-202ENST00000377797 CCDC114Q96M63 670 aa15.84■□□□□ 0.13
TCOF1-202ENST00000377797 TEX13BQ9BXU2 312 aa15.84■□□□□ 0.13
TCOF1-202ENST00000377797 NHEJ1Q9H9Q4 299 aaPredicted RBP15.84■□□□□ 0.13
TCOF1-202ENST00000377797 OPA1O60313 960 aa15.84■□□□□ 0.13
TCOF1-202ENST00000377797 NR3C1P04150 777 aa15.84■□□□□ 0.13
TCOF1-202ENST00000377797 CNGA1P29973 690 aa15.84■□□□□ 0.13
TCOF1-202ENST00000377797 ALCAMQ13740 583 aa15.84■□□□□ 0.13
TCOF1-202ENST00000377797 TFDP1Q14186 410 aa15.84■□□□□ 0.13
TCOF1-202ENST00000377797 ILDR1Q86SU0 546 aaPredicted RBP15.84■□□□□ 0.13
TCOF1-202ENST00000377797 CCDC25Q86WR0 208 aa15.84■□□□□ 0.13
TCOF1-202ENST00000377797 ADSSL1Q8N142 457 aa15.84■□□□□ 0.13
TCOF1-202ENST00000377797 CERS5Q8N5B7 392 aa15.84■□□□□ 0.13
TCOF1-202ENST00000377797 RIOX1Q9H6W3 641 aa15.84■□□□□ 0.13
TCOF1-202ENST00000377797 K7ERI5 159 aa15.84■□□□□ 0.13
TCOF1-202ENST00000377797 M0QZ92 97 aa15.84■□□□□ 0.13
TCOF1-202ENST00000377797 KCNK3O14649 394 aa15.84■□□□□ 0.13
TCOF1-202ENST00000377797 TCP1P17987 556 aaKnown RBP15.84■□□□□ 0.13
TCOF1-202ENST00000377797 ANKRD40Q6AI12 368 aa15.84■□□□□ 0.13
TCOF1-202ENST00000377797 CCDC170Q8IYT3 715 aa15.84■□□□□ 0.13
TCOF1-202ENST00000377797 BBXQ8WY36 941 aaPredicted RBP15.84■□□□□ 0.13
TCOF1-202ENST00000377797 CEP63Q96MT8 703 aa15.84■□□□□ 0.13
TCOF1-202ENST00000377797 TRIM31Q9BZY9 425 aa15.84■□□□□ 0.13
TCOF1-202ENST00000377797 MYMKA6NI61 221 aa15.83■□□□□ 0.13
TCOF1-202ENST00000377797 TBX3O15119 743 aa15.83■□□□□ 0.13
TCOF1-202ENST00000377797 CTNND1O60716 968 aaKnown RBP15.83■□□□□ 0.13
TCOF1-202ENST00000377797 TNNC2P02585 160 aa15.83■□□□□ 0.13
TCOF1-202ENST00000377797 PDE6CP51160 858 aa15.83■□□□□ 0.13
TCOF1-202ENST00000377797 CFAP58Q5T655 872 aa15.83■□□□□ 0.13
TCOF1-202ENST00000377797 AGBL1Q96MI9 1066 aa15.83■□□□□ 0.13
TCOF1-202ENST00000377797 GABBR1Q9UBS5 961 aa15.83■□□□□ 0.13
TCOF1-202ENST00000377797 GAKO14976 1311 aa15.83■□□□□ 0.13
TCOF1-202ENST00000377797 NAALADL2Q58DX5 795 aa15.83■□□□□ 0.12
TCOF1-202ENST00000377797 ZFPM1Q8IX07 1006 aa15.83■□□□□ 0.12
TCOF1-202ENST00000377797 RPGRIP1Q96KN7 1286 aa15.83■□□□□ 0.12
TCOF1-202ENST00000377797 MTRF1LQ9UGC7 380 aaKnown RBP15.83■□□□□ 0.12
TCOF1-202ENST00000377797 CDC23Q9UJX2 597 aa15.83■□□□□ 0.12
TCOF1-202ENST00000377797 GFPT2O94808 682 aa15.83■□□□□ 0.12
TCOF1-202ENST00000377797 RHOBTB3O94955 611 aa15.83■□□□□ 0.12
TCOF1-202ENST00000377797 SFNP31947 248 aa15.83■□□□□ 0.12
TCOF1-202ENST00000377797 EARS2Q5JPH6 523 aaKnown RBP15.83■□□□□ 0.12
TCOF1-202ENST00000377797 MCPH1Q8NEM0 835 aa15.83■□□□□ 0.12
TCOF1-202ENST00000377797 TRAF3IP1Q8TDR0 691 aaPredicted RBP15.83■□□□□ 0.12
TCOF1-202ENST00000377797 C7orf25Q9BPX7 421 aa15.83■□□□□ 0.12
TCOF1-202ENST00000377797 AKT3Q9Y243 479 aa15.83■□□□□ 0.12
TCOF1-202ENST00000377797 C19orf81C9J6K1 198 aa15.83■□□□□ 0.12
TCOF1-202ENST00000377797 EYA4O95677 639 aa15.83■□□□□ 0.12
TCOF1-202ENST00000377797 EVX2Q03828 476 aa15.83■□□□□ 0.12
TCOF1-202ENST00000377797 SWSAP1Q6NVH7 229 aa15.83■□□□□ 0.12
TCOF1-202ENST00000377797 RBM46Q8TBY0 533 aaKnown RBP15.83■□□□□ 0.12
TCOF1-202ENST00000377797 SLC37A4O43826 429 aa15.82■□□□□ 0.12
TCOF1-202ENST00000377797 SLC8A3P57103 927 aa15.82■□□□□ 0.12
TCOF1-202ENST00000377797 ELP3Q9H9T3 547 aa15.82■□□□□ 0.12
TCOF1-202ENST00000377797 ABHD10Q9NUJ1 306 aa15.82■□□□□ 0.12
TCOF1-202ENST00000377797 KIF4AO95239 1232 aa15.82■□□□□ 0.12
TCOF1-202ENST00000377797 MFAP3P55082 362 aa15.82■□□□□ 0.12
TCOF1-202ENST00000377797 EHHADHQ08426 723 aa15.82■□□□□ 0.12
TCOF1-202ENST00000377797 GPR161Q8N6U8 529 aaKnown RBP15.82■□□□□ 0.12
TCOF1-202ENST00000377797 ADAMTS1Q9UHI8 967 aa15.82■□□□□ 0.12
TCOF1-202ENST00000377797 EFCAB8A8MWE9 144 aa15.82■□□□□ 0.12
TCOF1-202ENST00000377797 PIK3CAP42336 1068 aa15.82■□□□□ 0.12
TCOF1-202ENST00000377797 ANKS1AQ92625 1134 aa15.82■□□□□ 0.12
TCOF1-202ENST00000377797 SH2D3AQ9BRG2 576 aa15.82■□□□□ 0.12
TCOF1-202ENST00000377797 CCDC94Q9BW85 323 aaPredicted RBP15.82■□□□□ 0.12
TCOF1-202ENST00000377797 IDI2Q9BXS1 227 aa15.82■□□□□ 0.12
TCOF1-202ENST00000377797 PLEKHA4Q9H4M7 779 aa15.82■□□□□ 0.12
TCOF1-202ENST00000377797 TLDC2A0PJX2 215 aa15.82■□□□□ 0.12
TCOF1-202ENST00000377797 SRGAP2CP0DJJ0 459 aa15.82■□□□□ 0.12
TCOF1-202ENST00000377797 PSMC5P62195 406 aa15.82■□□□□ 0.12
TCOF1-202ENST00000377797 KCNH2Q12809 1159 aa15.82■□□□□ 0.12
TCOF1-202ENST00000377797 ST7Q9NRC1 585 aa15.82■□□□□ 0.12
TCOF1-202ENST00000377797 TYW1Q9NV66 732 aaKnown RBP15.82■□□□□ 0.12
TCOF1-202ENST00000377797 SEL1LQ9UBV2 794 aa15.82■□□□□ 0.12
TCOF1-202ENST00000377797 NPHP3-ACAD11A0A0J9YXS1 232 aa15.81■□□□□ 0.12
TCOF1-202ENST00000377797 TTC26A0AVF1 554 aa15.81■□□□□ 0.12
TCOF1-202ENST00000377797 SLC16A4O15374 487 aa15.81■□□□□ 0.12
TCOF1-202ENST00000377797 FXR2P51116 673 aaKnown RBP eCLIP15.81■□□□□ 0.123e-7■■■■□ 22.5
TCOF1-202ENST00000377797 KIF11P52732 1056 aa15.81■□□□□ 0.12
TCOF1-202ENST00000377797 IFT20Q8IY31 132 aa15.81■□□□□ 0.12
TCOF1-202ENST00000377797 AGTPBP1Q9UPW5 1226 aa15.81■□□□□ 0.12
TCOF1-202ENST00000377797 P4HA1P13674 534 aa15.81■□□□□ 0.12
TCOF1-202ENST00000377797 YWHAEP62258 255 aaKnown RBP15.81■□□□□ 0.12
TCOF1-202ENST00000377797 PTK2Q05397 1052 aa15.81■□□□□ 0.12
TCOF1-202ENST00000377797 C2orf69Q8N8R5 385 aa15.81■□□□□ 0.12
TCOF1-202ENST00000377797 FAM208AQ9UK61 1670 aaKnown RBP15.81■□□□□ 0.12
TCOF1-202ENST00000377797 UBE2TQ9NPD8 197 aaPredicted RBP15.81■□□□□ 0.12
TCOF1-202ENST00000377797 PCDHA10Q9Y5I2 948 aa15.81■□□□□ 0.12
TCOF1-202ENST00000377797 ATP2A1O14983 1001 aa15.81■□□□□ 0.12
TCOF1-202ENST00000377797 LMNB1P20700 586 aa15.81■□□□□ 0.12
TCOF1-202ENST00000377797 ATG4CQ96DT6 458 aa15.81■□□□□ 0.12
TCOF1-202ENST00000377797 FAM107BQ9H098 131 aa15.81■□□□□ 0.12
TCOF1-202ENST00000377797 TMX2Q9Y320 296 aa15.81■□□□□ 0.12
TCOF1-202ENST00000377797 CYTH3O43739 400 aa15.8■□□□□ 0.12
TCOF1-202ENST00000377797 RBM43Q6ZSC3 357 aaKnown RBP15.8■□□□□ 0.12
TCOF1-202ENST00000377797 ZKSCAN4Q969J2 545 aaPredicted RBP15.8■□□□□ 0.12
TCOF1-202ENST00000377797 GMCL1Q96IK5 515 aa15.8■□□□□ 0.12
TCOF1-202ENST00000377797 TUFT1Q9NNX1 390 aa15.8■□□□□ 0.12
TCOF1-202ENST00000377797 PHLPP1O60346 1717 aa15.8■□□□□ 0.12
TCOF1-202ENST00000377797 TOGARAM2Q6ZUX3 1019 aa15.8■□□□□ 0.12
TCOF1-202ENST00000377797 CCDC77Q9BR77 488 aa15.8■□□□□ 0.12
TCOF1-202ENST00000377797 FUCA2Q9BTY2 467 aa15.8■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms