RNA–Protein interactions for RNA: ENST00000374876.4

CCDC40-202, Transcript of coiled-coil domain containing 40, humanhuman

TSL 1 (best) BASIC

Gene CCDC40, Length 2,010 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-202ENST00000374876 WDR24Q96S15 920 aa17.28■□□□□ 0.36
CCDC40-202ENST00000374876 C7orf25Q9BPX7 421 aa17.28■□□□□ 0.36
CCDC40-202ENST00000374876 RNF146Q9NTX7 359 aa17.28■□□□□ 0.36
CCDC40-202ENST00000374876 MAGEC2Q9UBF1 373 aaPredicted RBP17.28■□□□□ 0.36
CCDC40-202ENST00000374876 SPDYE4A6NLX3 237 aa17.28■□□□□ 0.36
CCDC40-202ENST00000374876 STRNO43815 780 aa17.28■□□□□ 0.36
CCDC40-202ENST00000374876 PGK2P07205 417 aa17.28■□□□□ 0.36
CCDC40-202ENST00000374876 FCER1AP12319 257 aa17.28■□□□□ 0.36
CCDC40-202ENST00000374876 ADORA2AP29274 412 aa17.28■□□□□ 0.36
CCDC40-202ENST00000374876 PMS1P54277 932 aaKnown RBP17.28■□□□□ 0.36
CCDC40-202ENST00000374876 PDE4DQ08499 809 aa17.28■□□□□ 0.36
CCDC40-202ENST00000374876 TMEM266Q2M3C6 531 aa17.28■□□□□ 0.36
CCDC40-202ENST00000374876 PPP1R18Q6NYC8 613 aa17.28■□□□□ 0.36
CCDC40-202ENST00000374876 IRF2BP1Q8IU81 584 aa17.28■□□□□ 0.36
CCDC40-202ENST00000374876 NOC3LQ8WTT2 800 aaKnown RBP17.28■□□□□ 0.36
CCDC40-202ENST00000374876 MMP19Q99542 508 aa17.28■□□□□ 0.36
CCDC40-202ENST00000374876 GTPBP4Q9BZE4 634 aaKnown RBP17.28■□□□□ 0.36
CCDC40-202ENST00000374876 MRPL44Q9H9J2 332 aaKnown RBP17.28■□□□□ 0.36
CCDC40-202ENST00000374876 ABHD10Q9NUJ1 306 aa17.28■□□□□ 0.36
CCDC40-202ENST00000374876 HTTP42858 3142 aa17.27■□□□□ 0.36
CCDC40-202ENST00000374876 SLC15A5A6NIM6 579 aa17.27■□□□□ 0.36
CCDC40-202ENST00000374876 GRB14Q14449 540 aa17.27■□□□□ 0.36
CCDC40-202ENST00000374876 FBXO38Q6PIJ6 1188 aa17.27■□□□□ 0.36
CCDC40-202ENST00000374876 FBXO11Q86XK2 927 aa17.27■□□□□ 0.36
CCDC40-202ENST00000374876 TMTC1Q8IUR5 882 aa17.27■□□□□ 0.36
CCDC40-202ENST00000374876 CHST13Q8NET6 341 aa17.27■□□□□ 0.36
CCDC40-202ENST00000374876 MTMR9Q96QG7 549 aa17.27■□□□□ 0.36
CCDC40-202ENST00000374876 RAB34Q9BZG1 259 aa17.27■□□□□ 0.36
CCDC40-202ENST00000374876 LZTFL1Q9NQ48 299 aa17.27■□□□□ 0.36
CCDC40-202ENST00000374876 LRWD1Q9UFC0 647 aa17.27■□□□□ 0.36
CCDC40-202ENST00000374876 PLXNB2O15031 1838 aa17.27■□□□□ 0.36
CCDC40-202ENST00000374876 PES1O00541 588 aaKnown RBP17.26■□□□□ 0.35
CCDC40-202ENST00000374876 FECHP22830 423 aa17.26■□□□□ 0.35
CCDC40-202ENST00000374876 COPB2P35606 906 aa17.26■□□□□ 0.35
CCDC40-202ENST00000374876 KCTD2Q14681 263 aa17.26■□□□□ 0.35
CCDC40-202ENST00000374876 PKN2Q16513 984 aaKnown RBP17.26■□□□□ 0.35
CCDC40-202ENST00000374876 FBXO46Q6PJ61 603 aaPredicted RBP17.26■□□□□ 0.35
CCDC40-202ENST00000374876 DPP9Q86TI2 863 aa17.26■□□□□ 0.35
CCDC40-202ENST00000374876 ANKRD35Q8N283 1001 aa17.26■□□□□ 0.35
CCDC40-202ENST00000374876 UBXN4Q92575 508 aa17.26■□□□□ 0.35
CCDC40-202ENST00000374876 USP6NLQ92738 828 aa17.26■□□□□ 0.35
CCDC40-202ENST00000374876 MMTAG2Q9BU76 263 aaKnown RBP17.26■□□□□ 0.35
CCDC40-202ENST00000374876 ACAD9Q9H845 621 aa17.26■□□□□ 0.35
CCDC40-202ENST00000374876 RIC8AQ9NPQ8 531 aa17.26■□□□□ 0.35
CCDC40-202ENST00000374876 ZNFX1Q9P2E3 1918 aaKnown RBP17.26■□□□□ 0.35
CCDC40-202ENST00000374876 BICDL2A1A5D9 508 aa17.26■□□□□ 0.35
CCDC40-202ENST00000374876 LGALS16A8MUM7 142 aa17.26■□□□□ 0.35
CCDC40-202ENST00000374876 NFIBO00712 420 aa17.26■□□□□ 0.35
CCDC40-202ENST00000374876 ELNP15502 786 aa17.26■□□□□ 0.35
CCDC40-202ENST00000374876 PPP1R2P41236 205 aa17.26■□□□□ 0.35
CCDC40-202ENST00000374876 FXR2P51116 673 aaKnown RBP eCLIP17.26■□□□□ 0.35
CCDC40-202ENST00000374876 MAP2K5Q13163 448 aa17.26■□□□□ 0.35
CCDC40-202ENST00000374876 TTI2Q6NXR4 508 aa17.26■□□□□ 0.35
CCDC40-202ENST00000374876 CYP26C1Q6V0L0 522 aa17.26■□□□□ 0.35
CCDC40-202ENST00000374876 CSGALNACT2Q8N6G5 542 aa17.26■□□□□ 0.35
CCDC40-202ENST00000374876 NPLOC4Q8TAT6 608 aa17.26■□□□□ 0.35
CCDC40-202ENST00000374876 CDK5RAP3Q96JB5 506 aa17.26■□□□□ 0.35
CCDC40-202ENST00000374876 CARD6Q9BX69 1037 aa17.26■□□□□ 0.35
CCDC40-202ENST00000374876 AMNQ9BXJ7 453 aa17.26■□□□□ 0.35
CCDC40-202ENST00000374876 SLC37A4O43826 429 aa17.25■□□□□ 0.35
CCDC40-202ENST00000374876 KIF5CO60282 957 aa17.25■□□□□ 0.35
CCDC40-202ENST00000374876 TDP2O95551 362 aa17.25■□□□□ 0.35
CCDC40-202ENST00000374876 PRMT2P55345 433 aa17.25■□□□□ 0.35
CCDC40-202ENST00000374876 CCL14Q16627 93 aa17.25■□□□□ 0.35
CCDC40-202ENST00000374876 TKFCQ3LXA3 575 aa17.25■□□□□ 0.35
CCDC40-202ENST00000374876 NSMFQ6X4W1 530 aa17.25■□□□□ 0.35
CCDC40-202ENST00000374876 SV2BQ7L1I2 683 aa17.25■□□□□ 0.35
CCDC40-202ENST00000374876 SH3TC2Q8TF17 1288 aa17.25■□□□□ 0.35
CCDC40-202ENST00000374876 CLEC4DQ8WXI8 215 aa17.25■□□□□ 0.35
CCDC40-202ENST00000374876 TBC1D5Q92609 795 aa17.25■□□□□ 0.35
CCDC40-202ENST00000374876 CUL5Q93034 780 aa17.25■□□□□ 0.35
CCDC40-202ENST00000374876 P2RX5Q93086 422 aa17.25■□□□□ 0.35
CCDC40-202ENST00000374876 OGFRQ9NZT2 677 aa17.25■□□□□ 0.35
CCDC40-202ENST00000374876 FBXO40Q9UH90 709 aa17.25■□□□□ 0.35
CCDC40-202ENST00000374876 PCDHA1Q9Y5I3 950 aa17.25■□□□□ 0.35
CCDC40-202ENST00000374876 ADCY3O60266 1144 aa17.25■□□□□ 0.35
CCDC40-202ENST00000374876 CCNE1P24864 410 aa17.25■□□□□ 0.35
CCDC40-202ENST00000374876 KRT9P35527 623 aa17.25■□□□□ 0.35
CCDC40-202ENST00000374876 RGS2P41220 211 aa17.25■□□□□ 0.35
CCDC40-202ENST00000374876 ARHGAP29Q52LW3 1261 aa17.25■□□□□ 0.35
CCDC40-202ENST00000374876 CNNM4Q6P4Q7 775 aa17.25■□□□□ 0.35
CCDC40-202ENST00000374876 SOCS4Q8WXH5 440 aa17.25■□□□□ 0.35
CCDC40-202ENST00000374876 STK17AQ9UEE5 414 aa17.25■□□□□ 0.35
CCDC40-202ENST00000374876 A0A1W2PQC6 194 aa17.24■□□□□ 0.35
CCDC40-202ENST00000374876 EFCAB8A8MWE9 144 aa17.24■□□□□ 0.35
CCDC40-202ENST00000374876 MRPL12P52815 198 aaKnown RBP17.24■□□□□ 0.35
CCDC40-202ENST00000374876 STK4Q13043 487 aa17.24■□□□□ 0.35
CCDC40-202ENST00000374876 UBE2SQ16763 222 aa17.24■□□□□ 0.35
CCDC40-202ENST00000374876 ABRAQ8N0Z2 381 aa17.24■□□□□ 0.35
CCDC40-202ENST00000374876 PURBQ96QR8 312 aaKnown RBP17.24■□□□□ 0.35
CCDC40-202ENST00000374876 A1CFQ9NQ94 594 aaKnown RBP17.24■□□□□ 0.35
CCDC40-202ENST00000374876 DDX41Q9UJV9 622 aaKnown RBP17.24■□□□□ 0.35
CCDC40-202ENST00000374876 RNF225M0QZC1 329 aaPredicted RBP17.23■□□□□ 0.35
CCDC40-202ENST00000374876 TADA3O75528 432 aa17.23■□□□□ 0.35
CCDC40-202ENST00000374876 MYCP01106 439 aaPredicted RBP17.23■□□□□ 0.35
CCDC40-202ENST00000374876 PRKCSHP14314 528 aaPredicted RBP17.23■□□□□ 0.35
CCDC40-202ENST00000374876 CNTN2Q02246 1040 aa17.23■□□□□ 0.35
CCDC40-202ENST00000374876 GRB10Q13322 594 aa17.23■□□□□ 0.35
CCDC40-202ENST00000374876 IRF5Q13568 498 aa17.23■□□□□ 0.35
CCDC40-202ENST00000374876 PDIA5Q14554 519 aa17.23■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms