RNA–Protein interactions for RNA: ENST00000372733.3

SDC4-201, Transcript of syndecan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC4, Length 2,613 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC4-201ENST00000372733 IRF2BP2Q7Z5L9 587 aa17.94■□□□□ 0.46
SDC4-201ENST00000372733 CYFIP2Q96F07 1278 aa17.94■□□□□ 0.46
SDC4-201ENST00000372733 SPAG5Q96R06 1193 aa17.94■□□□□ 0.46
SDC4-201ENST00000372733 NCAPGQ9BPX3 1015 aa17.94■□□□□ 0.46
SDC4-201ENST00000372733 EMILIN3Q9NT22 766 aa17.94■□□□□ 0.46
SDC4-201ENST00000372733 HDAC9Q9UKV0 1011 aa17.94■□□□□ 0.46
SDC4-201ENST00000372733 PCDHA12Q9UN75 941 aa17.94■□□□□ 0.46
SDC4-201ENST00000372733 TNRC6CQ9HCJ0 1690 aaKnown RBP17.94■□□□□ 0.46
SDC4-201ENST00000372733 BACH1O14867 736 aa17.93■□□□□ 0.46
SDC4-201ENST00000372733 NR2F2P24468 414 aa17.93■□□□□ 0.46
SDC4-201ENST00000372733 CASP5P51878 434 aa17.93■□□□□ 0.46
SDC4-201ENST00000372733 CUL1Q13616 776 aa17.93■□□□□ 0.46
SDC4-201ENST00000372733 ZNF804AQ7Z570 1209 aa17.93■□□□□ 0.46
SDC4-201ENST00000372733 METTL13Q8N6R0 699 aa17.93■□□□□ 0.46
SDC4-201ENST00000372733 BCCIPQ9P287 314 aaKnown RBP eCLIP17.93■□□□□ 0.46
SDC4-201ENST00000372733 TMCO5BA8MYB1 307 aa17.93■□□□□ 0.46
SDC4-201ENST00000372733 PGRMC1O00264 195 aaKnown RBP17.93■□□□□ 0.46
SDC4-201ENST00000372733 SART1O43290 800 aaKnown RBP17.93■□□□□ 0.46
SDC4-201ENST00000372733 ITGA4P13612 1032 aa17.93■□□□□ 0.46
SDC4-201ENST00000372733 CYP11B2P19099 503 aa17.93■□□□□ 0.46
SDC4-201ENST00000372733 YTHDF3Q7Z739 585 aaKnown RBP17.93■□□□□ 0.46
SDC4-201ENST00000372733 JMJD4Q9H9V9 463 aa17.93■□□□□ 0.46
SDC4-201ENST00000372733 NARFQ9UHQ1 456 aa17.93■□□□□ 0.46
SDC4-201ENST00000372733 SLC12A6Q9UHW9 1150 aa17.93■□□□□ 0.46
SDC4-201ENST00000372733 FBXL5Q9UKA1 691 aa17.93■□□□□ 0.46
SDC4-201ENST00000372733 CES2O00748 559 aa17.92■□□□□ 0.46
SDC4-201ENST00000372733 KRT18P05783 430 aaKnown RBP17.92■□□□□ 0.46
SDC4-201ENST00000372733 UCHL3P15374 230 aa17.92■□□□□ 0.46
SDC4-201ENST00000372733 TMOD1P28289 359 aa17.92■□□□□ 0.46
SDC4-201ENST00000372733 NOVP48745 357 aa17.92■□□□□ 0.46
SDC4-201ENST00000372733 RHBDL3P58872 404 aa17.92■□□□□ 0.46
SDC4-201ENST00000372733 ASPRV1Q53RT3 343 aa17.92■□□□□ 0.46
SDC4-201ENST00000372733 DPY19L2P1Q6NXN4 242 aa17.92■□□□□ 0.46
SDC4-201ENST00000372733 TPTE2Q6XPS3 522 aa17.92■□□□□ 0.46
SDC4-201ENST00000372733 ACTRT1Q8TDG2 376 aa17.92■□□□□ 0.46
SDC4-201ENST00000372733 UBLCP1Q8WVY7 318 aaPredicted RBP17.92■□□□□ 0.46
SDC4-201ENST00000372733 PBKQ96KB5 322 aa17.92■□□□□ 0.46
SDC4-201ENST00000372733 MTMR4Q9NYA4 1195 aa17.92■□□□□ 0.46
SDC4-201ENST00000372733 NAGPAQ9UK23 515 aa17.92■□□□□ 0.46
SDC4-201ENST00000372733 AJAP1Q9UKB5 411 aaPredicted RBP17.92■□□□□ 0.46
SDC4-201ENST00000372733 KDM3AQ9Y4C1 1321 aa17.92■□□□□ 0.46
SDC4-201ENST00000372733 GPR75-ASB3A0A0A6YYF3 556 aa17.92■□□□□ 0.46
SDC4-201ENST00000372733 BTNL10A8MVZ5 291 aa17.92■□□□□ 0.46
SDC4-201ENST00000372733 CETN3O15182 167 aa17.92■□□□□ 0.46
SDC4-201ENST00000372733 ZBTB48P10074 688 aaPredicted RBP17.92■□□□□ 0.46
SDC4-201ENST00000372733 STAT3P40763 770 aa17.92■□□□□ 0.46
SDC4-201ENST00000372733 TTBK2Q6IQ55 1244 aa17.92■□□□□ 0.46
SDC4-201ENST00000372733 ZC3H3Q8IXZ2 948 aaKnown RBP17.92■□□□□ 0.46
SDC4-201ENST00000372733 CCDC13Q8IYE1 715 aa17.92■□□□□ 0.46
SDC4-201ENST00000372733 RBM46Q8TBY0 533 aaKnown RBP17.92■□□□□ 0.46
SDC4-201ENST00000372733 LRRC45Q96CN5 670 aa17.92■□□□□ 0.46
SDC4-201ENST00000372733 VCPKMTQ9H867 229 aa17.92■□□□□ 0.46
SDC4-201ENST00000372733 AMACRQ9UHK6 382 aa17.92■□□□□ 0.46
SDC4-201ENST00000372733 COL24A1Q17RW2 1714 aa17.91■□□□□ 0.46
SDC4-201ENST00000372733 DAPK3O43293 454 aa17.91■□□□□ 0.46
SDC4-201ENST00000372733 CLK2P49760 499 aaKnown RBP17.91■□□□□ 0.46
SDC4-201ENST00000372733 HYIQ5T013 277 aa17.91■□□□□ 0.46
SDC4-201ENST00000372733 ALKBH5Q6P6C2 394 aaKnown RBP17.91■□□□□ 0.46
SDC4-201ENST00000372733 ADGRF4Q8IZF3 695 aa17.91■□□□□ 0.46
SDC4-201ENST00000372733 ARFGAP2Q8N6H7 521 aa17.91■□□□□ 0.46
SDC4-201ENST00000372733 TPCN2Q8NHX9 752 aa17.91■□□□□ 0.46
SDC4-201ENST00000372733 NT5C3AQ9H0P0 336 aa17.91■□□□□ 0.46
SDC4-201ENST00000372733 GEMIN8Q9NWZ8 242 aaKnown RBP17.91■□□□□ 0.46
SDC4-201ENST00000372733 POTEFA5A3E0 1075 aa17.91■□□□□ 0.46
SDC4-201ENST00000372733 DCDC2CA8MYV0 355 aa17.91■□□□□ 0.46
SDC4-201ENST00000372733 KRIT1O00522 736 aa17.91■□□□□ 0.46
SDC4-201ENST00000372733 POTEIP0CG38 1075 aa17.91■□□□□ 0.46
SDC4-201ENST00000372733 AKR1B1P15121 316 aa17.91■□□□□ 0.46
SDC4-201ENST00000372733 SLC16A2P36021 539 aa17.91■□□□□ 0.46
SDC4-201ENST00000372733 ACTN3Q08043 901 aaPredicted RBP17.91■□□□□ 0.46
SDC4-201ENST00000372733 QPCTQ16769 361 aa17.91■□□□□ 0.46
SDC4-201ENST00000372733 POTEGQ6S5H5 508 aa17.91■□□□□ 0.46
SDC4-201ENST00000372733 POTEEQ6S8J3 1075 aa17.91■□□□□ 0.46
SDC4-201ENST00000372733 GPATCH11Q8N954 259 aa17.91■□□□□ 0.46
SDC4-201ENST00000372733 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP17.91■□□□□ 0.463e-6■■■■■ 50.8
SDC4-201ENST00000372733 BUD13Q9BRD0 619 aaKnown RBP eCLIP17.91■□□□□ 0.461e-8■■■□□ 15.9
SDC4-201ENST00000372733 LRRC4CQ9HCJ2 640 aa17.91■□□□□ 0.46
SDC4-201ENST00000372733 CNOT8Q9UFF9 292 aaKnown RBP17.91■□□□□ 0.46
SDC4-201ENST00000372733 LEMD3Q9Y2U8 911 aa17.91■□□□□ 0.46
SDC4-201ENST00000372733 MYH7BA7E2Y1 1941 aa17.91■□□□□ 0.46
SDC4-201ENST00000372733 CNTNAP4Q9C0A0 1308 aa17.91■□□□□ 0.46
SDC4-201ENST00000372733 SPRED3Q2MJR0 410 aa17.9■□□□□ 0.46
SDC4-201ENST00000372733 ARSHQ5FYA8 562 aa17.9■□□□□ 0.46
SDC4-201ENST00000372733 DCAF17Q5H9S7 520 aaPredicted RBP17.9■□□□□ 0.46
SDC4-201ENST00000372733 C6orf89Q6UWU4 347 aa17.9■□□□□ 0.46
SDC4-201ENST00000372733 DPP8Q6V1X1 898 aaPredicted RBP17.9■□□□□ 0.46
SDC4-201ENST00000372733 CCDC91Q7Z6B0 441 aa17.9■□□□□ 0.46
SDC4-201ENST00000372733 EIF1ADQ8N9N8 165 aaKnown RBP17.9■□□□□ 0.46
SDC4-201ENST00000372733 CUL5Q93034 780 aa17.9■□□□□ 0.46
SDC4-201ENST00000372733 MYCBPQ99417 103 aaPredicted RBP17.9■□□□□ 0.46
SDC4-201ENST00000372733 ATAD5Q96QE3 1844 aa17.9■□□□□ 0.46
SDC4-201ENST00000372733 PNMA6FA0A0J9YX94 578 aa17.9■□□□□ 0.46
SDC4-201ENST00000372733 BHMG1C9JSJ3 638 aaPredicted RBP17.9■□□□□ 0.46
SDC4-201ENST00000372733 PEX26Q7Z412 305 aa17.9■□□□□ 0.46
SDC4-201ENST00000372733 AMIGO3Q86WK7 504 aa17.9■□□□□ 0.46
SDC4-201ENST00000372733 CALR3Q96L12 384 aaKnown RBP17.9■□□□□ 0.46
SDC4-201ENST00000372733 CELF4Q9BZC1 486 aaKnown RBP17.9■□□□□ 0.46
SDC4-201ENST00000372733 ARMCX3Q9UH62 379 aaPredicted RBP17.9■□□□□ 0.46
SDC4-201ENST00000372733 STRCQ7RTU9 1775 aa17.89■□□□□ 0.46
SDC4-201ENST00000372733 FAM170AA1A519 330 aa17.89■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms