RNA–Protein interactions for RNA: ENST00000371621.4

PTPN1-201, Transcript of protein tyrosine phosphatase, non-receptor type 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPN1, Length 4,008 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN1-201ENST00000371621 PPIL4Q8WUA2 492 aaKnown RBP eCLIP12.72□□□□□ -0.37
PTPN1-201ENST00000371621 FOXP1Q9H334 677 aaPredicted RBP12.72□□□□□ -0.37
PTPN1-201ENST00000371621 PFDN4Q9NQP4 134 aa12.72□□□□□ -0.37
PTPN1-201ENST00000371621 ZSWIM5Q9P217 1185 aa12.72□□□□□ -0.37
PTPN1-201ENST00000371621 PNMA3Q9UL41 463 aa12.72□□□□□ -0.37
PTPN1-201ENST00000371621 KIF1BO60333 1816 aa12.72□□□□□ -0.37
PTPN1-201ENST00000371621 ORC4O43929 436 aa12.72□□□□□ -0.37
PTPN1-201ENST00000371621 TMCC1O94876 653 aa12.72□□□□□ -0.37
PTPN1-201ENST00000371621 PYGBP11216 843 aa12.72□□□□□ -0.37
PTPN1-201ENST00000371621 PLCG2P16885 1265 aa12.72□□□□□ -0.37
PTPN1-201ENST00000371621 CALML3P27482 149 aa12.72□□□□□ -0.37
PTPN1-201ENST00000371621 TRMT112Q9UI30 125 aaKnown RBP12.72□□□□□ -0.37
PTPN1-201ENST00000371621 KAT6BQ8WYB5 2073 aa12.72□□□□□ -0.37
PTPN1-201ENST00000371621 RNF17Q9BXT8 1623 aaKnown RBP12.72□□□□□ -0.37
PTPN1-201ENST00000371621 TNNI2P48788 182 aa12.72□□□□□ -0.37
PTPN1-201ENST00000371621 PCYT1AP49585 367 aa12.72□□□□□ -0.37
PTPN1-201ENST00000371621 DNAJC3Q13217 504 aa12.72□□□□□ -0.37
PTPN1-201ENST00000371621 SYT2Q8N9I0 419 aaPredicted RBP12.72□□□□□ -0.37
PTPN1-201ENST00000371621 GLG1Q92896 1179 aa12.72□□□□□ -0.37
PTPN1-201ENST00000371621 PHACTR1Q9C0D0 580 aa12.72□□□□□ -0.37
PTPN1-201ENST00000371621 PARP2Q9UGN5 583 aa12.72□□□□□ -0.37
PTPN1-201ENST00000371621 NEURL1BA8MQ27 555 aa12.71□□□□□ -0.37
PTPN1-201ENST00000371621 SNRPA1P09661 255 aaKnown RBP12.71□□□□□ -0.37
PTPN1-201ENST00000371621 PHEXP78562 749 aa12.71□□□□□ -0.37
PTPN1-201ENST00000371621 CACNB1Q02641 598 aaPredicted RBP12.71□□□□□ -0.37
PTPN1-201ENST00000371621 ZBTB17Q13105 803 aa12.71□□□□□ -0.37
PTPN1-201ENST00000371621 ITGB3BPQ13352 177 aaPredicted RBP12.71□□□□□ -0.37
PTPN1-201ENST00000371621 WLSQ5T9L3 541 aa12.71□□□□□ -0.37
PTPN1-201ENST00000371621 PPP1R21Q6ZMI0 780 aa12.71□□□□□ -0.37
PTPN1-201ENST00000371621 ANKRD35Q8N283 1001 aa12.71□□□□□ -0.37
PTPN1-201ENST00000371621 MAML1Q92585 1016 aa12.71□□□□□ -0.37
PTPN1-201ENST00000371621 RUNDC3BQ96NL0 473 aa12.71□□□□□ -0.37
PTPN1-201ENST00000371621 FBXO2Q9UK22 296 aaPredicted RBP12.71□□□□□ -0.37
PTPN1-201ENST00000371621 ANGPTL2Q9UKU9 493 aa12.71□□□□□ -0.37
PTPN1-201ENST00000371621 RCCD1A6NED2 376 aa12.71□□□□□ -0.37
PTPN1-201ENST00000371621 ENTPD5O75356 428 aa12.71□□□□□ -0.37
PTPN1-201ENST00000371621 KLRC1P26715 233 aa12.71□□□□□ -0.37
PTPN1-201ENST00000371621 ADORA1P30542 326 aa12.71□□□□□ -0.37
PTPN1-201ENST00000371621 EXOSC10Q01780 885 aaKnown RBP12.71□□□□□ -0.37
PTPN1-201ENST00000371621 OLFML1Q6UWY5 402 aa12.71□□□□□ -0.37
PTPN1-201ENST00000371621 RGS9BPQ6ZS82 235 aa12.71□□□□□ -0.37
PTPN1-201ENST00000371621 MSL3Q8N5Y2 521 aaKnown RBP12.71□□□□□ -0.37
PTPN1-201ENST00000371621 RBM41Q96IZ5 413 aaKnown RBP12.71□□□□□ -0.37
PTPN1-201ENST00000371621 PUS3Q9BZE2 481 aaKnown RBP12.71□□□□□ -0.37
PTPN1-201ENST00000371621 MIS12Q9H081 205 aa12.71□□□□□ -0.37
PTPN1-201ENST00000371621 AMOTL2Q9Y2J4 779 aa12.71□□□□□ -0.37
PTPN1-201ENST00000371621 PPRC1Q5VV67 1664 aaKnown RBP12.71□□□□□ -0.38
PTPN1-201ENST00000371621 ZNF76P36508 570 aa12.71□□□□□ -0.38
PTPN1-201ENST00000371621 IFI35P80217 286 aaPredicted RBP12.71□□□□□ -0.38
PTPN1-201ENST00000371621 ZNF844Q08AG5 666 aa12.71□□□□□ -0.38
PTPN1-201ENST00000371621 DMPKQ09013 629 aa12.71□□□□□ -0.38
PTPN1-201ENST00000371621 TNIP1Q15025 636 aa12.71□□□□□ -0.38
PTPN1-201ENST00000371621 EPHA10Q5JZY3 1008 aa12.71□□□□□ -0.38
PTPN1-201ENST00000371621 TATDN2Q93075 761 aa12.71□□□□□ -0.38
PTPN1-201ENST00000371621 FAM89AQ96GI7 184 aa12.71□□□□□ -0.38
PTPN1-201ENST00000371621 DENND2AQ9ULE3 1009 aa12.71□□□□□ -0.38
PTPN1-201ENST00000371621 PDE5AO76074 875 aa12.7□□□□□ -0.38
PTPN1-201ENST00000371621 SLC5A1P13866 664 aa12.7□□□□□ -0.38
PTPN1-201ENST00000371621 CCNE1P24864 410 aa12.7□□□□□ -0.38
PTPN1-201ENST00000371621 VHLP40337 213 aa12.7□□□□□ -0.38
PTPN1-201ENST00000371621 STAT1P42224 750 aa12.7□□□□□ -0.38
PTPN1-201ENST00000371621 MRPS9P82933 396 aaKnown RBP12.7□□□□□ -0.38
PTPN1-201ENST00000371621 SNX30Q5VWJ9 437 aa12.7□□□□□ -0.38
PTPN1-201ENST00000371621 ZNF444Q8N0Y2 327 aaPredicted RBP12.7□□□□□ -0.38
PTPN1-201ENST00000371621 TEKT1Q969V4 418 aa12.7□□□□□ -0.38
PTPN1-201ENST00000371621 PBKQ96KB5 322 aa12.7□□□□□ -0.38
PTPN1-201ENST00000371621 SPATA17Q96L03 361 aa12.7□□□□□ -0.38
PTPN1-201ENST00000371621 METTL22Q9BUU2 404 aaPredicted RBP12.7□□□□□ -0.38
PTPN1-201ENST00000371621 PIDD1Q9HB75 910 aa12.7□□□□□ -0.38
PTPN1-201ENST00000371621 NDE1Q9NXR1 346 aa12.7□□□□□ -0.38
PTPN1-201ENST00000371621 TRAF3IP3Q9Y228 551 aa12.7□□□□□ -0.38
PTPN1-201ENST00000371621 USTQ9Y2C2 406 aa12.7□□□□□ -0.38
PTPN1-201ENST00000371621 TSPOAP1O95153 1857 aa12.7□□□□□ -0.38
PTPN1-201ENST00000371621 DCTN3O75935 186 aa12.7□□□□□ -0.38
PTPN1-201ENST00000371621 LMNAP02545 664 aaKnown RBP12.7□□□□□ -0.38
PTPN1-201ENST00000371621 CETN1Q12798 172 aa12.7□□□□□ -0.38
PTPN1-201ENST00000371621 XRCC4Q13426 336 aa12.7□□□□□ -0.38
PTPN1-201ENST00000371621 RABGAP1LQ5R372 815 aa12.7□□□□□ -0.38
PTPN1-201ENST00000371621 CTAGE3PQ8IX95 158 aa12.7□□□□□ -0.38
PTPN1-201ENST00000371621 SLC26A7Q8TE54 656 aa12.7□□□□□ -0.38
PTPN1-201ENST00000371621 EPS8L3Q8TE67 593 aaKnown RBP12.7□□□□□ -0.38
PTPN1-201ENST00000371621 MYOM2P54296 1465 aa12.7□□□□□ -0.38
PTPN1-201ENST00000371621 AMPD2Q01433 879 aa12.7□□□□□ -0.38
PTPN1-201ENST00000371621 MED21Q13503 144 aa12.7□□□□□ -0.38
PTPN1-201ENST00000371621 MAN2A1Q16706 1144 aa12.7□□□□□ -0.38
PTPN1-201ENST00000371621 AKAP4Q5JQC9 854 aa12.7□□□□□ -0.38
PTPN1-201ENST00000371621 SENP2Q9HC62 589 aa12.7□□□□□ -0.38
PTPN1-201ENST00000371621 CLIC5Q9NZA1 410 aa12.7□□□□□ -0.38
PTPN1-201ENST00000371621 SCINQ9Y6U3 715 aa12.7□□□□□ -0.38
PTPN1-201ENST00000371621 HECW2Q9P2P5 1572 aa12.7□□□□□ -0.38
PTPN1-201ENST00000371621 MAP3K4Q9Y6R4 1608 aa12.7□□□□□ -0.38
PTPN1-201ENST00000371621 NPHP3-ACAD11A0A0J9YXS1 232 aa12.69□□□□□ -0.38
PTPN1-201ENST00000371621 DCDC2CA8MYV0 355 aa12.69□□□□□ -0.38
PTPN1-201ENST00000371621 EVA1CP58658 441 aa12.69□□□□□ -0.38
PTPN1-201ENST00000371621 KDSRQ06136 332 aa12.69□□□□□ -0.38
PTPN1-201ENST00000371621 GRIK3Q13003 919 aa12.69□□□□□ -0.38
PTPN1-201ENST00000371621 CYLC2Q14093 348 aaPredicted RBP12.69□□□□□ -0.38
PTPN1-201ENST00000371621 CYTH1Q15438 398 aa12.69□□□□□ -0.38
PTPN1-201ENST00000371621 CYB5R4Q7L1T6 521 aa12.69□□□□□ -0.38
PTPN1-201ENST00000371621 EPM2AIP1Q7L775 607 aaPredicted RBP12.69□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 66.3 ms