RNA–Protein interactions for RNA: ENST00000366942.3

USH2A-202, Transcript of usherin, humanhuman

TSL 1 (best) BASIC

Gene USH2A, Length 6,320 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH2A-202ENST00000366942 CDK5RAP1Q96SZ6 601 aaKnown RBP4.45□□□□□ -1.7
USH2A-202ENST00000366942 SLC26A6Q9BXS9 759 aa4.45□□□□□ -1.7
USH2A-202ENST00000366942 CCDC8Q9H0W5 538 aaPredicted RBP4.45□□□□□ -1.7
USH2A-202ENST00000366942 MIR1-1HGQ9H1L0 117 aa4.45□□□□□ -1.7
USH2A-202ENST00000366942 ST7Q9NRC1 585 aa4.45□□□□□ -1.7
USH2A-202ENST00000366942 SH2B1Q9NRF2 756 aaPredicted RBP4.45□□□□□ -1.7
USH2A-202ENST00000366942 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP4.45□□□□□ -1.7
USH2A-202ENST00000366942 AATFQ9NY61 560 aaKnown RBP eCLIP4.45□□□□□ -1.7
USH2A-202ENST00000366942 SELENONQ9NZV5 590 aa4.45□□□□□ -1.7
USH2A-202ENST00000366942 TJP2Q9UDY2 1190 aa4.45□□□□□ -1.7
USH2A-202ENST00000366942 TTLL3Q9Y4R7 772 aa4.45□□□□□ -1.7
USH2A-202ENST00000366942 ALDH2P05091 517 aa4.45□□□□□ -1.7
USH2A-202ENST00000366942 KRT5P13647 590 aa4.45□□□□□ -1.7
USH2A-202ENST00000366942 THPOP40225 353 aa4.45□□□□□ -1.7
USH2A-202ENST00000366942 ARRB1P49407 418 aaPredicted RBP4.45□□□□□ -1.7
USH2A-202ENST00000366942 KRT76Q01546 638 aa4.45□□□□□ -1.7
USH2A-202ENST00000366942 ABRQ12979 859 aa4.45□□□□□ -1.7
USH2A-202ENST00000366942 DBN1Q16643 649 aa4.45□□□□□ -1.7
USH2A-202ENST00000366942 VWA3BQ502W6 1294 aa4.45□□□□□ -1.7
USH2A-202ENST00000366942 AKNAD1Q5T1N1 836 aa4.45□□□□□ -1.7
USH2A-202ENST00000366942 IZUMO3Q5VZ72 239 aa4.45□□□□□ -1.7
USH2A-202ENST00000366942 GALNT17Q6IS24 598 aa4.45□□□□□ -1.7
USH2A-202ENST00000366942 CYP4F22Q6NT55 531 aa4.45□□□□□ -1.7
USH2A-202ENST00000366942 PPP4R4Q6NUP7 873 aa4.45□□□□□ -1.7
USH2A-202ENST00000366942 SCYL2Q6P3W7 929 aa4.45□□□□□ -1.7
USH2A-202ENST00000366942 KLRG1Q96E93 195 aa4.45□□□□□ -1.7
USH2A-202ENST00000366942 MTMR9Q96QG7 549 aa4.45□□□□□ -1.7
USH2A-202ENST00000366942 NFKBIZQ9BYH8 718 aa4.45□□□□□ -1.7
USH2A-202ENST00000366942 USP29Q9HBJ7 922 aa4.45□□□□□ -1.7
USH2A-202ENST00000366942 CRTAC1Q9NQ79 661 aa4.45□□□□□ -1.7
USH2A-202ENST00000366942 F13A1P00488 732 aa4.44□□□□□ -1.7
USH2A-202ENST00000366942 CFIP05156 583 aa4.44□□□□□ -1.7
USH2A-202ENST00000366942 ESRRAP11474 423 aaPredicted RBP4.44□□□□□ -1.7
USH2A-202ENST00000366942 KRT20P35900 424 aa4.44□□□□□ -1.7
USH2A-202ENST00000366942 CAPZA2P47755 286 aa4.44□□□□□ -1.7
USH2A-202ENST00000366942 PHEXP78562 749 aa4.44□□□□□ -1.7
USH2A-202ENST00000366942 STAT4Q14765 748 aa4.44□□□□□ -1.7
USH2A-202ENST00000366942 PSMD6Q15008 389 aa4.44□□□□□ -1.7
USH2A-202ENST00000366942 USP39Q53GS9 565 aaKnown RBP4.44□□□□□ -1.7
USH2A-202ENST00000366942 FAM102BQ5T8I3 360 aa4.44□□□□□ -1.7
USH2A-202ENST00000366942 NCAPH2Q6IBW4 605 aa4.44□□□□□ -1.7
USH2A-202ENST00000366942 ISLR2Q6UXK2 745 aa4.44□□□□□ -1.7
USH2A-202ENST00000366942 MTSS1LQ765P7 747 aa4.44□□□□□ -1.7
USH2A-202ENST00000366942 REXO1Q8N1G1 1221 aaKnown RBP4.44□□□□□ -1.7
USH2A-202ENST00000366942 TM9SF4Q92544 642 aa4.44□□□□□ -1.7
USH2A-202ENST00000366942 DDX17Q92841 729 aaKnown RBP4.44□□□□□ -1.7
USH2A-202ENST00000366942 PBXIP1Q96AQ6 731 aa4.44□□□□□ -1.7
USH2A-202ENST00000366942 MRPL17Q9NRX2 175 aaKnown RBP4.44□□□□□ -1.7
USH2A-202ENST00000366942 TNFSF13BQ9Y275 285 aa4.44□□□□□ -1.7
USH2A-202ENST00000366942 SLC15A5A6NIM6 579 aa4.44□□□□□ -1.7
USH2A-202ENST00000366942 PHF20L1A8MW92 1017 aa4.44□□□□□ -1.7
USH2A-202ENST00000366942 DYNC1I1O14576 645 aa4.44□□□□□ -1.7
USH2A-202ENST00000366942 RNF113AO15541 343 aaKnown RBP4.44□□□□□ -1.7
USH2A-202ENST00000366942 MED7O43513 233 aa4.44□□□□□ -1.7
USH2A-202ENST00000366942 MBD4O95243 580 aa4.44□□□□□ -1.7
USH2A-202ENST00000366942 A1BGP04217 495 aa4.44□□□□□ -1.7
USH2A-202ENST00000366942 APOA4P06727 396 aa4.44□□□□□ -1.7
USH2A-202ENST00000366942 CKMP06732 381 aa4.44□□□□□ -1.7
USH2A-202ENST00000366942 ITGAVP06756 1048 aa4.44□□□□□ -1.7
USH2A-202ENST00000366942 CNPP09543 421 aaKnown RBP4.44□□□□□ -1.7
USH2A-202ENST00000366942 ERVK-10P10266 1014 aa4.44□□□□□ -1.7
USH2A-202ENST00000366942 CYP2C9P11712 490 aa4.44□□□□□ -1.7
USH2A-202ENST00000366942 C6P13671 934 aa4.44□□□□□ -1.7
USH2A-202ENST00000366942 ETFBP38117 255 aa4.44□□□□□ -1.7
USH2A-202ENST00000366942 CDR2Q01850 454 aa4.44□□□□□ -1.7
USH2A-202ENST00000366942 PPATQ06203 517 aa4.44□□□□□ -1.7
USH2A-202ENST00000366942 IQCB1Q15051 598 aa4.44□□□□□ -1.7
USH2A-202ENST00000366942 MAPK6Q16659 721 aa4.44□□□□□ -1.7
USH2A-202ENST00000366942 FAM151AQ8WW52 585 aa4.44□□□□□ -1.7
USH2A-202ENST00000366942 LZICQ8WZA0 190 aa4.44□□□□□ -1.7
USH2A-202ENST00000366942 E2F7Q96AV8 911 aa4.44□□□□□ -1.7
USH2A-202ENST00000366942 PKNOX2Q96KN3 472 aa4.44□□□□□ -1.7
USH2A-202ENST00000366942 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP4.44□□□□□ -1.7
USH2A-202ENST00000366942 EFHD1Q9BUP0 239 aa4.44□□□□□ -1.7
USH2A-202ENST00000366942 GPR88Q9GZN0 384 aa4.44□□□□□ -1.7
USH2A-202ENST00000366942 TBC1D22BQ9NU19 505 aa4.44□□□□□ -1.7
USH2A-202ENST00000366942 KIF17Q9P2E2 1029 aa4.44□□□□□ -1.7
USH2A-202ENST00000366942 SMCO2A6NFE2 343 aa4.44□□□□□ -1.7
USH2A-202ENST00000366942 RNF8O76064 485 aa4.44□□□□□ -1.7
USH2A-202ENST00000366942 YEATS4O95619 227 aa4.44□□□□□ -1.7
USH2A-202ENST00000366942 FESP07332 822 aa4.44□□□□□ -1.7
USH2A-202ENST00000366942 ATXN8OSP0DMR3 200 aa4.44□□□□□ -1.7
USH2A-202ENST00000366942 VPS41P49754 854 aa4.44□□□□□ -1.7
USH2A-202ENST00000366942 MTMR3Q13615 1198 aa4.44□□□□□ -1.7
USH2A-202ENST00000366942 ACAP2Q15057 778 aa4.44□□□□□ -1.7
USH2A-202ENST00000366942 LGSNQ5TDP6 509 aa4.44□□□□□ -1.7
USH2A-202ENST00000366942 RRAGBQ5VZM2 374 aa4.44□□□□□ -1.7
USH2A-202ENST00000366942 CASP10Q92851 521 aa4.44□□□□□ -1.7
USH2A-202ENST00000366942 AGBL1Q96MI9 1066 aa4.44□□□□□ -1.7
USH2A-202ENST00000366942 APBA2Q99767 749 aa4.44□□□□□ -1.7
USH2A-202ENST00000366942 PSTPIP2Q9H939 334 aa4.44□□□□□ -1.7
USH2A-202ENST00000366942 NMRK2Q9NPI5 230 aa4.44□□□□□ -1.7
USH2A-202ENST00000366942 DZANK1Q9NVP4 752 aa4.44□□□□□ -1.7
USH2A-202ENST00000366942 TRPM5Q9NZQ8 1165 aa4.44□□□□□ -1.7
USH2A-202ENST00000366942 VPS51Q9UID3 782 aa4.44□□□□□ -1.7
USH2A-202ENST00000366942 TNS3Q68CZ2 1445 aa4.44□□□□□ -1.7
USH2A-202ENST00000366942 SPATA31A1Q5TZJ5 1347 aa4.44□□□□□ -1.7
USH2A-202ENST00000366942 UBN2Q6ZU65 1347 aa4.44□□□□□ -1.7
USH2A-202ENST00000366942 GPR75-ASB3A0A0A6YYF3 556 aa4.44□□□□□ -1.7
USH2A-202ENST00000366942 GOLGA8JA6NMD2 632 aa4.44□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms