RNA–Protein interactions for RNA: ENST00000360019.7

CLN3-206, Transcript of CLN3, battenin, humanhuman

TSL 2 BASIC

Gene CLN3, Length 1,840 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-206ENST00000360019 SMAP1Q8IYB5 467 aaPredicted RBP20.76■□□□□ 0.91
CLN3-206ENST00000360019 DNAJC19Q96DA6 116 aa20.76■□□□□ 0.91
CLN3-206ENST00000360019 MAML3Q96JK9 1138 aa20.76■□□□□ 0.91
CLN3-206ENST00000360019 ZSWIM4Q9H7M6 989 aa20.76■□□□□ 0.91
CLN3-206ENST00000360019 DIS3Q9Y2L1 958 aaKnown RBP20.76■□□□□ 0.91
CLN3-206ENST00000360019 PCDHA10Q9Y5I2 948 aa20.76■□□□□ 0.91
CLN3-206ENST00000360019 CENPFP49454 3210 aa20.76■□□□□ 0.91
CLN3-206ENST00000360019 QARSP47897 775 aaKnown RBP20.76■□□□□ 0.91
CLN3-206ENST00000360019 ACTR2P61160 394 aa20.76■□□□□ 0.91
CLN3-206ENST00000360019 ARSHQ5FYA8 562 aa20.76■□□□□ 0.91
CLN3-206ENST00000360019 MAMDC4Q6UXC1 1216 aa20.76■□□□□ 0.91
CLN3-206ENST00000360019 NPLOC4Q8TAT6 608 aa20.76■□□□□ 0.91
CLN3-206ENST00000360019 NACC1Q96RE7 527 aa20.76■□□□□ 0.91
CLN3-206ENST00000360019 DDX41Q9UJV9 622 aaKnown RBP20.76■□□□□ 0.91
CLN3-206ENST00000360019 FARP2O94887 1054 aaPredicted RBP20.75■□□□□ 0.91
CLN3-206ENST00000360019 CD44P16070 742 aaKnown RBP20.75■□□□□ 0.91
CLN3-206ENST00000360019 LY6KQ17RY6 165 aa20.75■□□□□ 0.91
CLN3-206ENST00000360019 UVSSAQ2YD98 709 aa20.75■□□□□ 0.91
CLN3-206ENST00000360019 ZNF658Q5TYW1 1059 aaPredicted RBP20.75■□□□□ 0.91
CLN3-206ENST00000360019 AOPEPQ8N6M6 819 aa20.75■□□□□ 0.91
CLN3-206ENST00000360019 PDGFCQ9NRA1 345 aa20.75■□□□□ 0.91
CLN3-206ENST00000360019 GDAQ9Y2T3 454 aa20.75■□□□□ 0.91
CLN3-206ENST00000360019 NPHP3-ACAD11A0A0J9YXS1 232 aa20.74■□□□□ 0.91
CLN3-206ENST00000360019 LYPLA2O95372 231 aa20.74■□□□□ 0.91
CLN3-206ENST00000360019 ALDH1A1P00352 501 aa20.74■□□□□ 0.91
CLN3-206ENST00000360019 NEDD9Q14511 834 aa20.74■□□□□ 0.91
CLN3-206ENST00000360019 CCDC62Q6P9F0 684 aa20.74■□□□□ 0.91
CLN3-206ENST00000360019 KCNV1Q6PIU1 500 aa20.74■□□□□ 0.91
CLN3-206ENST00000360019 ABHD15Q6UXT9 468 aa20.74■□□□□ 0.91
CLN3-206ENST00000360019 UNC13DQ70J99 1090 aa20.74■□□□□ 0.91
CLN3-206ENST00000360019 KATNBL1Q9H079 304 aa20.74■□□□□ 0.91
CLN3-206ENST00000360019 PVALEFA0A1B0GWK0 134 aa20.74■□□□□ 0.91
CLN3-206ENST00000360019 PPP1R3GB7ZBB8 358 aa20.74■□□□□ 0.91
CLN3-206ENST00000360019 SNAI1O95863 264 aaPredicted RBP20.74■□□□□ 0.91
CLN3-206ENST00000360019 CTGFP29279 349 aa20.74■□□□□ 0.91
CLN3-206ENST00000360019 PSMC5P62195 406 aa20.74■□□□□ 0.91
CLN3-206ENST00000360019 MAP2K5Q13163 448 aa20.74■□□□□ 0.91
CLN3-206ENST00000360019 GIMAP8Q8ND71 665 aaPredicted RBP20.74■□□□□ 0.91
CLN3-206ENST00000360019 EXOC1Q9NV70 894 aa20.74■□□□□ 0.91
CLN3-206ENST00000360019 CDKN2AIPQ9NXV6 580 aaPredicted RBP20.74■□□□□ 0.91
CLN3-206ENST00000360019 DACH1Q9UI36 760 aa20.74■□□□□ 0.91
CLN3-206ENST00000360019 SYNGAP1Q96PV0 1343 aa20.73■□□□□ 0.91
CLN3-206ENST00000360019 GGPS1O95749 300 aa20.73■□□□□ 0.91
CLN3-206ENST00000360019 CACNB1Q02641 598 aaPredicted RBP20.73■□□□□ 0.91
CLN3-206ENST00000360019 TMEM63BQ5T3F8 832 aa20.73■□□□□ 0.91
CLN3-206ENST00000360019 TAPT1Q6NXT6 567 aa20.73■□□□□ 0.91
CLN3-206ENST00000360019 METTL7BQ6UX53 244 aa20.73■□□□□ 0.91
CLN3-206ENST00000360019 CCDC60Q8IWA6 550 aaPredicted RBP20.73■□□□□ 0.91
CLN3-206ENST00000360019 C4orf19Q8IY42 314 aa20.73■□□□□ 0.91
CLN3-206ENST00000360019 USP6NLQ92738 828 aa20.73■□□□□ 0.91
CLN3-206ENST00000360019 HPS3Q969F9 1004 aa20.73■□□□□ 0.91
CLN3-206ENST00000360019 RUSC1Q9BVN2 902 aa20.73■□□□□ 0.91
CLN3-206ENST00000360019 VTA1Q9NP79 307 aa20.73■□□□□ 0.91
CLN3-206ENST00000360019 BMP2KQ9NSY1 1161 aaPredicted RBP20.73■□□□□ 0.91
CLN3-206ENST00000360019 ATG7O95352 703 aa20.72■□□□□ 0.91
CLN3-206ENST00000360019 PSAPP07602 524 aa20.72■□□□□ 0.91
CLN3-206ENST00000360019 IDEP14735 1019 aa20.72■□□□□ 0.91
CLN3-206ENST00000360019 EHHADHQ08426 723 aa20.72■□□□□ 0.91
CLN3-206ENST00000360019 RAD51AP2Q09MP3 1159 aa20.72■□□□□ 0.91
CLN3-206ENST00000360019 NCAPHQ15003 741 aa20.72■□□□□ 0.91
CLN3-206ENST00000360019 RINT1Q6NUQ1 792 aa20.72■□□□□ 0.91
CLN3-206ENST00000360019 MED15Q96RN5 788 aa20.72■□□□□ 0.91
CLN3-206ENST00000360019 TINF2Q9BSI4 451 aa20.72■□□□□ 0.91
CLN3-206ENST00000360019 GABBR1Q9UBS5 961 aa20.72■□□□□ 0.91
CLN3-206ENST00000360019 WDR81Q562E7 1941 aa20.72■□□□□ 0.91
CLN3-206ENST00000360019 BECN2A8MW95 431 aa20.71■□□□□ 0.91
CLN3-206ENST00000360019 SUPT20HL2P0C7V6 817 aa20.71■□□□□ 0.91
CLN3-206ENST00000360019 STK4Q13043 487 aa20.71■□□□□ 0.91
CLN3-206ENST00000360019 SWSAP1Q6NVH7 229 aa20.71■□□□□ 0.91
CLN3-206ENST00000360019 MIS18BP1Q6P0N0 1132 aa20.71■□□□□ 0.91
CLN3-206ENST00000360019 REM2Q8IYK8 340 aaPredicted RBP20.71■□□□□ 0.91
CLN3-206ENST00000360019 SCFD2Q8WU76 684 aa20.71■□□□□ 0.91
CLN3-206ENST00000360019 CCDC47Q96A33 483 aaKnown RBP20.71■□□□□ 0.91
CLN3-206ENST00000360019 REEP2Q9BRK0 252 aa20.71■□□□□ 0.91
CLN3-206ENST00000360019 SLC5A4Q9NY91 659 aa20.71■□□□□ 0.91
CLN3-206ENST00000360019 TNPO2O14787 897 aaKnown RBP20.71■□□□□ 0.91
CLN3-206ENST00000360019 ZNF862O60290 1169 aa20.71■□□□□ 0.91
CLN3-206ENST00000360019 HOXC6P09630 235 aa20.71■□□□□ 0.91
CLN3-206ENST00000360019 TXNP10599 105 aaKnown RBP20.71■□□□□ 0.91
CLN3-206ENST00000360019 YWHABP31946 246 aaKnown RBP20.71■□□□□ 0.91
CLN3-206ENST00000360019 HTRA3P83110 453 aa20.71■□□□□ 0.91
CLN3-206ENST00000360019 GIT2Q14161 759 aa20.71■□□□□ 0.91
CLN3-206ENST00000360019 TTLL4Q14679 1199 aa20.71■□□□□ 0.91
CLN3-206ENST00000360019 CELF3Q5SZQ8 465 aaKnown RBP20.71■□□□□ 0.91
CLN3-206ENST00000360019 C1orf186Q6ZWK4 172 aa20.71■□□□□ 0.91
CLN3-206ENST00000360019 COPS5Q92905 334 aa20.71■□□□□ 0.91
CLN3-206ENST00000360019 GJD2Q9UKL4 321 aa20.71■□□□□ 0.91
CLN3-206ENST00000360019 GSTTP1A0A1W2PQM5 241 aa20.7■□□□□ 0.9
CLN3-206ENST00000360019 RBM47A0AV96 593 aaKnown RBP20.7■□□□□ 0.9
CLN3-206ENST00000360019 FRMD3A2A2Y4 597 aa20.7■□□□□ 0.9
CLN3-206ENST00000360019 TMEM150BA6NC51 233 aa20.7■□□□□ 0.9
CLN3-206ENST00000360019 IKBKBO14920 756 aa20.7■□□□□ 0.9
CLN3-206ENST00000360019 KRT18P05783 430 aaKnown RBP20.7■□□□□ 0.9
CLN3-206ENST00000360019 PRCPP42785 496 aa20.7■□□□□ 0.9
CLN3-206ENST00000360019 RARRES1P49788 294 aa20.7■□□□□ 0.9
CLN3-206ENST00000360019 COASYQ13057 564 aa20.7■□□□□ 0.9
CLN3-206ENST00000360019 KIAA0895Q8NCT3 520 aa20.7■□□□□ 0.9
CLN3-206ENST00000360019 MLXIPQ9HAP2 919 aa20.7■□□□□ 0.9
CLN3-206ENST00000360019 PANK4Q9NVE7 773 aa20.7■□□□□ 0.9
CLN3-206ENST00000360019 DBR1Q9UK59 544 aaKnown RBP20.7■□□□□ 0.9
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms