RNA–Protein interactions for RNA: ENST00000359947.8

PTPRF-201, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best) BASIC

Gene PTPRF, Length 7,727 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-201ENST00000359947 TSC1Q92574 1164 aa16.83■□□□□ 0.28
PTPRF-201ENST00000359947 FAM114A2Q9NRY5 505 aa16.83■□□□□ 0.28
PTPRF-201ENST00000359947 ARL13BQ3SXY8 428 aa16.83■□□□□ 0.28
PTPRF-201ENST00000359947 ADGRL3Q9HAR2 1447 aa16.82■□□□□ 0.28
PTPRF-201ENST00000359947 OAS2P29728 719 aaKnown RBP16.82■□□□□ 0.28
PTPRF-201ENST00000359947 RECQLP46063 649 aaPredicted RBP16.82■□□□□ 0.28
PTPRF-201ENST00000359947 ZNF568Q3ZCX4 644 aa16.82■□□□□ 0.28
PTPRF-201ENST00000359947 PPP6R3Q5H9R7 873 aaPredicted RBP16.82■□□□□ 0.28
PTPRF-201ENST00000359947 TCP11Q8WWU5 503 aa16.82■□□□□ 0.28
PTPRF-201ENST00000359947 IFT122Q9HBG6 1241 aa16.82■□□□□ 0.28
PTPRF-201ENST00000359947 NGRNQ9NPE2 291 aaKnown RBP16.82■□□□□ 0.28
PTPRF-201ENST00000359947 TSR3Q9UJK0 312 aaKnown RBP16.82■□□□□ 0.28
PTPRF-201ENST00000359947 LRRD1A4D1F6 860 aa16.82■□□□□ 0.28
PTPRF-201ENST00000359947 RBL2Q08999 1139 aa16.82■□□□□ 0.28
PTPRF-201ENST00000359947 TXNRD1Q16881 649 aa16.82■□□□□ 0.28
PTPRF-201ENST00000359947 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP16.82■□□□□ 0.28
PTPRF-201ENST00000359947 ASPHQ12797 758 aa16.82■□□□□ 0.28
PTPRF-201ENST00000359947 SPON1Q9HCB6 807 aa16.82■□□□□ 0.28
PTPRF-201ENST00000359947 FEM1BQ9UK73 627 aa16.82■□□□□ 0.28
PTPRF-201ENST00000359947 TRAPPC10P48553 1259 aa16.82■□□□□ 0.28
PTPRF-201ENST00000359947 NSUN7Q8NE18 718 aaKnown RBP16.82■□□□□ 0.28
PTPRF-201ENST00000359947 N4BP2L2Q92802 583 aaPredicted RBP16.82■□□□□ 0.28
PTPRF-201ENST00000359947 CUEDC2Q9H467 287 aa16.82■□□□□ 0.28
PTPRF-201ENST00000359947 MAGEF1Q9HAY2 307 aa16.82■□□□□ 0.28
PTPRF-201ENST00000359947 SESN3P58005 492 aa16.82■□□□□ 0.28
PTPRF-201ENST00000359947 TTLL4Q14679 1199 aa16.82■□□□□ 0.28
PTPRF-201ENST00000359947 RNF146Q9NTX7 359 aa16.82■□□□□ 0.28
PTPRF-201ENST00000359947 CLEC4GQ6UXB4 293 aa16.82■□□□□ 0.28
PTPRF-201ENST00000359947 CYP27B1O15528 508 aa16.81■□□□□ 0.28
PTPRF-201ENST00000359947 PPFIA4O75335 1185 aa16.81■□□□□ 0.28
PTPRF-201ENST00000359947 UPP2O95045 317 aa16.81■□□□□ 0.28
PTPRF-201ENST00000359947 ZNF157P51786 506 aaPredicted RBP16.81■□□□□ 0.28
PTPRF-201ENST00000359947 SLC39A14Q15043 492 aa16.81■□□□□ 0.28
PTPRF-201ENST00000359947 SWSAP1Q6NVH7 229 aa16.81■□□□□ 0.28
PTPRF-201ENST00000359947 FAM117BQ6P1L5 589 aa16.81■□□□□ 0.28
PTPRF-201ENST00000359947 PDZD8Q8NEN9 1154 aa16.81■□□□□ 0.28
PTPRF-201ENST00000359947 TNPO2O14787 897 aaKnown RBP16.81■□□□□ 0.28
PTPRF-201ENST00000359947 FGD4Q96M96 766 aa16.81■□□□□ 0.28
PTPRF-201ENST00000359947 KLHL14Q9P2G3 628 aa16.81■□□□□ 0.28
PTPRF-201ENST00000359947 SPATA31A3Q5VYP0 1347 aa16.81■□□□□ 0.28
PTPRF-201ENST00000359947 RCN2Q14257 317 aa16.81■□□□□ 0.28
PTPRF-201ENST00000359947 HABP4Q5JVS0 413 aaKnown RBP16.81■□□□□ 0.28
PTPRF-201ENST00000359947 STK17AQ9UEE5 414 aa16.81■□□□□ 0.28
PTPRF-201ENST00000359947 TBK1Q9UHD2 729 aa16.81■□□□□ 0.28
PTPRF-201ENST00000359947 FKBP3Q00688 224 aaKnown RBP16.81■□□□□ 0.28
PTPRF-201ENST00000359947 DBN1Q16643 649 aa16.81■□□□□ 0.28
PTPRF-201ENST00000359947 ZNF658Q5TYW1 1059 aaPredicted RBP16.81■□□□□ 0.28
PTPRF-201ENST00000359947 ANGPTL8Q6UXH0 198 aa16.81■□□□□ 0.28
PTPRF-201ENST00000359947 CYFIP1Q7L576 1253 aa16.81■□□□□ 0.28
PTPRF-201ENST00000359947 SPDL1Q96EA4 605 aa16.81■□□□□ 0.28
PTPRF-201ENST00000359947 PRR36Q9H6K5 1346 aa16.81■□□□□ 0.28
PTPRF-201ENST00000359947 ZMYND10O75800 440 aa16.81■□□□□ 0.28
PTPRF-201ENST00000359947 PRAMEF18Q5VWM3 479 aa16.81■□□□□ 0.28
PTPRF-201ENST00000359947 TRIM11Q96F44 468 aa16.81■□□□□ 0.28
PTPRF-201ENST00000359947 ATP6V0A4Q9HBG4 840 aa16.81■□□□□ 0.28
PTPRF-201ENST00000359947 ZNF302Q9NR11 478 aa16.81■□□□□ 0.28
PTPRF-201ENST00000359947 G3BP2Q9UN86 482 aaKnown RBP16.81■□□□□ 0.28
PTPRF-201ENST00000359947 FTCDO95954 541 aa16.8■□□□□ 0.28
PTPRF-201ENST00000359947 NSUN2Q08J23 767 aaKnown RBP eCLIP16.8■□□□□ 0.28
PTPRF-201ENST00000359947 MAPK6Q16659 721 aa16.8■□□□□ 0.28
PTPRF-201ENST00000359947 DHTKD1Q96HY7 919 aaPredicted RBP16.8■□□□□ 0.28
PTPRF-201ENST00000359947 MYO3BQ8WXR4 1341 aa16.8■□□□□ 0.28
PTPRF-201ENST00000359947 TSPY1Q01534 308 aa16.8■□□□□ 0.28
PTPRF-201ENST00000359947 DCAF4Q8WV16 495 aa16.8■□□□□ 0.28
PTPRF-201ENST00000359947 SSH2Q76I76 1423 aa16.8■□□□□ 0.28
PTPRF-201ENST00000359947 PPP6R2O75170 966 aa16.8■□□□□ 0.28
PTPRF-201ENST00000359947 SSTR3P32745 418 aaPredicted RBP16.8■□□□□ 0.28
PTPRF-201ENST00000359947 CACNB2Q08289 660 aaPredicted RBP16.8■□□□□ 0.28
PTPRF-201ENST00000359947 MAN1B1Q9UKM7 699 aa16.8■□□□□ 0.28
PTPRF-201ENST00000359947 ERICH1Q86X53 443 aa16.8■□□□□ 0.28
PTPRF-201ENST00000359947 LRRC8CQ8TDW0 803 aa16.8■□□□□ 0.28
PTPRF-201ENST00000359947 PRPF3O43395 683 aaKnown RBP16.8■□□□□ 0.28
PTPRF-201ENST00000359947 ZNF467Q7Z7K2 595 aaPredicted RBP16.8■□□□□ 0.28
PTPRF-201ENST00000359947 CEP95Q96GE4 821 aa16.8■□□□□ 0.28
PTPRF-201ENST00000359947 HOMER3Q9NSC5 361 aa16.8■□□□□ 0.28
PTPRF-201ENST00000359947 PSMA2P25787 234 aa16.8■□□□□ 0.28
PTPRF-201ENST00000359947 ZNF667Q5HYK9 610 aa16.8■□□□□ 0.28
PTPRF-201ENST00000359947 KCTD16Q68DU8 428 aa16.8■□□□□ 0.28
PTPRF-201ENST00000359947 SYNDIG1Q9H7V2 258 aa16.8■□□□□ 0.28
PTPRF-201ENST00000359947 MRPL47Q9HD33 250 aaKnown RBP16.8■□□□□ 0.28
PTPRF-201ENST00000359947 KCNH4Q9UQ05 1017 aa16.8■□□□□ 0.28
PTPRF-201ENST00000359947 AXIN2Q9Y2T1 843 aa16.8■□□□□ 0.28
PTPRF-201ENST00000359947 HUS1O60921 280 aa16.79■□□□□ 0.28
PTPRF-201ENST00000359947 SERPINB6P35237 376 aa16.79■□□□□ 0.28
PTPRF-201ENST00000359947 RFC1P35251 1148 aaPredicted RBP16.79■□□□□ 0.28
PTPRF-201ENST00000359947 IFNAR2P48551 515 aa16.79■□□□□ 0.28
PTPRF-201ENST00000359947 ANO4Q32M45 955 aa16.79■□□□□ 0.28
PTPRF-201ENST00000359947 FAM8A1Q9UBU6 413 aa16.79■□□□□ 0.28
PTPRF-201ENST00000359947 HMGCS2P54868 508 aa16.79■□□□□ 0.28
PTPRF-201ENST00000359947 CYP27A1Q02318 531 aa16.79■□□□□ 0.28
PTPRF-201ENST00000359947 LMNTD2Q8IXW0 634 aa16.79■□□□□ 0.28
PTPRF-201ENST00000359947 RNF10Q8N5U6 811 aaKnown RBP16.79■□□□□ 0.28
PTPRF-201ENST00000359947 POTEMA6NI47 508 aa16.79■□□□□ 0.28
PTPRF-201ENST00000359947 EFCAB8A8MWE9 144 aa16.79■□□□□ 0.28
PTPRF-201ENST00000359947 MOCS3O95396 460 aa16.79■□□□□ 0.28
PTPRF-201ENST00000359947 PHKA2P46019 1235 aa16.79■□□□□ 0.28
PTPRF-201ENST00000359947 DCAF4L1Q3SXM0 396 aa16.79■□□□□ 0.28
PTPRF-201ENST00000359947 C10orf76Q5T2E6 689 aa16.79■□□□□ 0.28
PTPRF-201ENST00000359947 SPOPLQ6IQ16 392 aa16.79■□□□□ 0.28
PTPRF-201ENST00000359947 LRGUKQ96M69 825 aa16.79■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms