RNA–Protein interactions for RNA: ENST00000356922.5

LIG4-201, Transcript of DNA ligase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIG4, Length 4,096 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG4-201ENST00000356922 FXR2P51116 673 aaKnown RBP eCLIP4.53□□□□□ -1.68
LIG4-201ENST00000356922 KRT85P78386 507 aa4.53□□□□□ -1.68
LIG4-201ENST00000356922 DRP2Q13474 957 aa4.53□□□□□ -1.68
LIG4-201ENST00000356922 LRRC41Q15345 812 aa4.53□□□□□ -1.68
LIG4-201ENST00000356922 GNPTABQ3T906 1256 aa4.53□□□□□ -1.68
LIG4-201ENST00000356922 LONRF3Q496Y0 759 aa4.53□□□□□ -1.68
LIG4-201ENST00000356922 ARMC5Q96C12 935 aa4.53□□□□□ -1.68
LIG4-201ENST00000356922 CEP89Q96ST8 783 aa4.53□□□□□ -1.68
LIG4-201ENST00000356922 RIT2Q99578 217 aa4.53□□□□□ -1.68
LIG4-201ENST00000356922 XPNPEP3Q9NQH7 507 aa4.53□□□□□ -1.68
LIG4-201ENST00000356922 BMP2KQ9NSY1 1161 aaPredicted RBP4.53□□□□□ -1.68
LIG4-201ENST00000356922 BLOC1S4Q9NUP1 217 aa4.53□□□□□ -1.68
LIG4-201ENST00000356922 GABBR1Q9UBS5 961 aa4.53□□□□□ -1.68
LIG4-201ENST00000356922 LRWD1Q9UFC0 647 aa4.53□□□□□ -1.68
LIG4-201ENST00000356922 TRIP12Q14669 1992 aaPredicted RBP4.53□□□□□ -1.68
LIG4-201ENST00000356922 TBX3O15119 743 aa4.53□□□□□ -1.68
LIG4-201ENST00000356922 STAM2O75886 525 aa4.53□□□□□ -1.68
LIG4-201ENST00000356922 GJB1P08034 283 aa4.53□□□□□ -1.68
LIG4-201ENST00000356922 GJA9P57773 515 aa4.53□□□□□ -1.68
LIG4-201ENST00000356922 FSCN1Q16658 493 aaKnown RBP4.53□□□□□ -1.68
LIG4-201ENST00000356922 MARCH8Q5T0T0 291 aa4.53□□□□□ -1.68
LIG4-201ENST00000356922 PLA2G4FQ68DD2 849 aa4.53□□□□□ -1.68
LIG4-201ENST00000356922 MCTP2Q6DN12 878 aa4.53□□□□□ -1.68
LIG4-201ENST00000356922 TEX2Q8IWB9 1127 aa4.53□□□□□ -1.68
LIG4-201ENST00000356922 TPH2Q8IWU9 490 aa4.53□□□□□ -1.68
LIG4-201ENST00000356922 KRI1Q8N9T8 703 aaKnown RBP4.53□□□□□ -1.68
LIG4-201ENST00000356922 ENGASEQ8NFI3 743 aa4.53□□□□□ -1.68
LIG4-201ENST00000356922 OR6J1Q8NGC5 347 aa4.53□□□□□ -1.68
LIG4-201ENST00000356922 U2AF1L4Q8WU68 220 aaKnown RBP4.53□□□□□ -1.68
LIG4-201ENST00000356922 UBE2Q2Q8WVN8 375 aa4.53□□□□□ -1.68
LIG4-201ENST00000356922 WNT8BQ93098 351 aa4.53□□□□□ -1.68
LIG4-201ENST00000356922 SAMM50Q9Y512 469 aa4.53□□□□□ -1.68
LIG4-201ENST00000356922 NFASCO94856 1347 aa4.53□□□□□ -1.68
LIG4-201ENST00000356922 LOC102724159A0A0B4J2E5 919 aa4.53□□□□□ -1.68
LIG4-201ENST00000356922 NPHP3-ACAD11A0A0J9YXS1 232 aa4.53□□□□□ -1.68
LIG4-201ENST00000356922 PPP6R2O75170 966 aa4.53□□□□□ -1.68
LIG4-201ENST00000356922 GH1P01241 217 aa4.53□□□□□ -1.68
LIG4-201ENST00000356922 LGALS2P05162 132 aa4.53□□□□□ -1.68
LIG4-201ENST00000356922 HOXD8P13378 290 aaPredicted RBP4.53□□□□□ -1.68
LIG4-201ENST00000356922 PRPHP41219 470 aa4.53□□□□□ -1.68
LIG4-201ENST00000356922 PURAQ00577 322 aaKnown RBP4.53□□□□□ -1.68
LIG4-201ENST00000356922 SETQ01105 290 aaPredicted RBP4.53□□□□□ -1.68
LIG4-201ENST00000356922 PDIA5Q14554 519 aa4.53□□□□□ -1.68
LIG4-201ENST00000356922 PWP2Q15269 919 aaKnown RBP4.53□□□□□ -1.68
LIG4-201ENST00000356922 ARL6IP4Q66PJ3 421 aaKnown RBP4.53□□□□□ -1.68
LIG4-201ENST00000356922 ADALQ6DHV7 355 aa4.53□□□□□ -1.68
LIG4-201ENST00000356922 PPTC7Q8NI37 304 aa4.53□□□□□ -1.68
LIG4-201ENST00000356922 EMID1Q96A84 441 aaPredicted RBP4.53□□□□□ -1.68
LIG4-201ENST00000356922 ZNF396Q96N95 335 aaPredicted RBP4.53□□□□□ -1.68
LIG4-201ENST00000356922 TBC1D22BQ9NU19 505 aa4.53□□□□□ -1.68
LIG4-201ENST00000356922 CFAP45Q9UL16 551 aa4.53□□□□□ -1.68
LIG4-201ENST00000356922 KIAA1024Q9UPX6 916 aa4.53□□□□□ -1.68
LIG4-201ENST00000356922 HPSEQ9Y251 543 aa4.53□□□□□ -1.68
LIG4-201ENST00000356922 PCDHA10Q9Y5I2 948 aa4.53□□□□□ -1.68
LIG4-201ENST00000356922 MAFBQ9Y5Q3 323 aaPredicted RBP4.53□□□□□ -1.68
LIG4-201ENST00000356922 PPFIA4O75335 1185 aa4.52□□□□□ -1.69
LIG4-201ENST00000356922 SGPL1O95470 568 aa4.52□□□□□ -1.69
LIG4-201ENST00000356922 SUPT20HL2P0C7V6 817 aa4.52□□□□□ -1.69
LIG4-201ENST00000356922 PFKFB1P16118 471 aa4.52□□□□□ -1.69
LIG4-201ENST00000356922 PRMT2P55345 433 aa4.52□□□□□ -1.69
LIG4-201ENST00000356922 RAD51AP2Q09MP3 1159 aa4.52□□□□□ -1.69
LIG4-201ENST00000356922 MKRN4PQ13434 485 aaPredicted RBP4.52□□□□□ -1.69
LIG4-201ENST00000356922 NEDD9Q14511 834 aa4.52□□□□□ -1.69
LIG4-201ENST00000356922 E2F4Q16254 413 aa4.52□□□□□ -1.69
LIG4-201ENST00000356922 ARSHQ5FYA8 562 aa4.52□□□□□ -1.69
LIG4-201ENST00000356922 RESP18Q5W5W9 173 aa4.52□□□□□ -1.69
LIG4-201ENST00000356922 SEPT1Q8WYJ6 367 aa4.52□□□□□ -1.69
LIG4-201ENST00000356922 LXNQ9BS40 222 aa4.52□□□□□ -1.69
LIG4-201ENST00000356922 TEKT3Q9BXF9 490 aa4.52□□□□□ -1.69
LIG4-201ENST00000356922 CRISPLD2Q9H0B8 497 aa4.52□□□□□ -1.69
LIG4-201ENST00000356922 EHMT1Q9H9B1 1298 aa4.52□□□□□ -1.69
LIG4-201ENST00000356922 ELP1O95163 1332 aa4.52□□□□□ -1.69
LIG4-201ENST00000356922 POLR2DO15514 142 aaKnown RBP4.52□□□□□ -1.69
LIG4-201ENST00000356922 RARBP10826 455 aa4.52□□□□□ -1.69
LIG4-201ENST00000356922 PLCG1P19174 1290 aa4.52□□□□□ -1.69
LIG4-201ENST00000356922 MCM4P33991 863 aa4.52□□□□□ -1.69
LIG4-201ENST00000356922 CACNB1Q02641 598 aaPredicted RBP4.52□□□□□ -1.69
LIG4-201ENST00000356922 LAMC2Q13753 1193 aa4.52□□□□□ -1.69
LIG4-201ENST00000356922 DHX8Q14562 1220 aaKnown RBP4.52□□□□□ -1.69
LIG4-201ENST00000356922 PLCB4Q15147 1175 aa4.52□□□□□ -1.69
LIG4-201ENST00000356922 MIER3Q7Z3K6 550 aa4.52□□□□□ -1.69
LIG4-201ENST00000356922 SLFN12Q8IYM2 578 aa4.52□□□□□ -1.69
LIG4-201ENST00000356922 ZNF668Q96K58 619 aaPredicted RBP4.52□□□□□ -1.69
LIG4-201ENST00000356922 SDF4Q9BRK5 362 aa4.52□□□□□ -1.69
LIG4-201ENST00000356922 SCAND2PQ9GZW5 306 aaPredicted RBP4.52□□□□□ -1.69
LIG4-201ENST00000356922 UPF3AQ9H1J1 476 aaKnown RBP4.52□□□□□ -1.69
LIG4-201ENST00000356922 DDX19AQ9NUU7 478 aaKnown RBP4.52□□□□□ -1.69
LIG4-201ENST00000356922 OGDHLQ9ULD0 1010 aa4.52□□□□□ -1.69
LIG4-201ENST00000356922 SFI1A8K8P3 1242 aa4.52□□□□□ -1.69
LIG4-201ENST00000356922 H3BRB1 525 aa4.52□□□□□ -1.69
LIG4-201ENST00000356922 PDIA4P13667 645 aaKnown RBP4.52□□□□□ -1.69
LIG4-201ENST00000356922 RPA1P27694 616 aa4.52□□□□□ -1.69
LIG4-201ENST00000356922 STAT5BP51692 787 aa4.52□□□□□ -1.69
LIG4-201ENST00000356922 ACLYP53396 1101 aa4.52□□□□□ -1.69
LIG4-201ENST00000356922 ATN1P54259 1190 aaPredicted RBP4.52□□□□□ -1.69
LIG4-201ENST00000356922 ARHGEF6Q15052 776 aa4.52□□□□□ -1.69
LIG4-201ENST00000356922 EPHA7Q15375 998 aa4.52□□□□□ -1.69
LIG4-201ENST00000356922 KIAA0753Q2KHM9 967 aa4.52□□□□□ -1.69
LIG4-201ENST00000356922 ZNF746Q6NUN9 644 aaPredicted RBP4.52□□□□□ -1.69
LIG4-201ENST00000356922 MAEAQ7L5Y9 396 aa4.52□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms