RNA–Protein interactions for RNA: ENST00000343524.9

ATG4A-201, Transcript of autophagy related 4A cysteine peptidase, humanhuman

TSL 2

Gene ATG4A, Length 1,941 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4A-201ENST00000343524 PGM2Q96G03 612 aa8.87□□□□□ -0.99
ATG4A-201ENST00000343524 KAZALD1Q96I82 304 aa8.87□□□□□ -0.99
ATG4A-201ENST00000343524 KRT12Q99456 494 aa8.87□□□□□ -0.99
ATG4A-201ENST00000343524 MMADHCQ9H3L0 296 aaPredicted RBP8.87□□□□□ -0.99
ATG4A-201ENST00000343524 FAM114A2Q9NRY5 505 aa8.87□□□□□ -0.99
ATG4A-201ENST00000343524 TXLNGQ9NUQ3 528 aa8.87□□□□□ -0.99
ATG4A-201ENST00000343524 LARSQ9P2J5 1176 aaKnown RBP8.87□□□□□ -0.99
ATG4A-201ENST00000343524 PLAGL2Q9UPG8 496 aa8.87□□□□□ -0.99
ATG4A-201ENST00000343524 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP8.87□□□□□ -0.99
ATG4A-201ENST00000343524 BICDL2A1A5D9 508 aa8.86□□□□□ -0.99
ATG4A-201ENST00000343524 PLEKHG3A1L390 1219 aa8.86□□□□□ -0.99
ATG4A-201ENST00000343524 CCDC169A6NNP5 214 aa8.86□□□□□ -0.99
ATG4A-201ENST00000343524 MAFGO15525 162 aa8.86□□□□□ -0.99
ATG4A-201ENST00000343524 AKR1B10O60218 316 aa8.86□□□□□ -0.99
ATG4A-201ENST00000343524 DEXIO95424 95 aa8.86□□□□□ -0.99
ATG4A-201ENST00000343524 SP100P23497 879 aaPredicted RBP8.86□□□□□ -0.99
ATG4A-201ENST00000343524 CCDC15Q0P6D6 951 aa8.86□□□□□ -0.99
ATG4A-201ENST00000343524 ADAM9Q13443 819 aa8.86□□□□□ -0.99
ATG4A-201ENST00000343524 GALNTL6Q49A17 601 aa8.86□□□□□ -0.99
ATG4A-201ENST00000343524 TRIM68Q6AZZ1 485 aa8.86□□□□□ -0.99
ATG4A-201ENST00000343524 ANO7Q6IWH7 933 aa8.86□□□□□ -0.99
ATG4A-201ENST00000343524 ZNF365Q70YC5 407 aa8.86□□□□□ -0.99
ATG4A-201ENST00000343524 TAOK1Q7L7X3 1001 aa8.86□□□□□ -0.99
ATG4A-201ENST00000343524 TBC1D5Q92609 795 aa8.86□□□□□ -0.99
ATG4A-201ENST00000343524 PBKQ96KB5 322 aa8.86□□□□□ -0.99
ATG4A-201ENST00000343524 TRIM47Q96LD4 638 aa8.86□□□□□ -0.99
ATG4A-201ENST00000343524 PCMTD1Q96MG8 357 aaPredicted RBP8.86□□□□□ -0.99
ATG4A-201ENST00000343524 ERGIC2Q96RQ1 377 aa8.86□□□□□ -0.99
ATG4A-201ENST00000343524 TLR10Q9BXR5 811 aa8.86□□□□□ -0.99
ATG4A-201ENST00000343524 RNPEPL1Q9HAU8 725 aa8.86□□□□□ -0.99
ATG4A-201ENST00000343524 SEC31BQ9NQW1 1179 aa8.86□□□□□ -0.99
ATG4A-201ENST00000343524 ADAM22Q9P0K1 906 aa8.86□□□□□ -0.99
ATG4A-201ENST00000343524 PDP2Q9P2J9 529 aa8.86□□□□□ -0.99
ATG4A-201ENST00000343524 VPS9D1Q9Y2B5 631 aa8.86□□□□□ -0.99
ATG4A-201ENST00000343524 USP15Q9Y4E8 981 aaPredicted RBP8.86□□□□□ -0.99
ATG4A-201ENST00000343524 SSU72P8A0A1W2PR75 194 aa8.86□□□□□ -0.99
ATG4A-201ENST00000343524 SART1O43290 800 aaKnown RBP8.86□□□□□ -0.99
ATG4A-201ENST00000343524 PRPF3O43395 683 aaKnown RBP8.86□□□□□ -0.99
ATG4A-201ENST00000343524 SKIP12755 728 aa8.86□□□□□ -0.99
ATG4A-201ENST00000343524 GNAZP19086 355 aa8.86□□□□□ -0.99
ATG4A-201ENST00000343524 CALB2P22676 271 aa8.86□□□□□ -0.99
ATG4A-201ENST00000343524 MAGEA1P43355 309 aa8.86□□□□□ -0.99
ATG4A-201ENST00000343524 MMP13P45452 471 aa8.86□□□□□ -0.99
ATG4A-201ENST00000343524 TOB1P50616 345 aaPredicted RBP8.86□□□□□ -0.99
ATG4A-201ENST00000343524 BNIP1Q12981 228 aa8.86□□□□□ -0.99
ATG4A-201ENST00000343524 TMEM154Q6P9G4 183 aa8.86□□□□□ -0.99
ATG4A-201ENST00000343524 TRIM42Q8IWZ5 723 aa8.86□□□□□ -0.99
ATG4A-201ENST00000343524 AGGF1Q8N302 714 aaeCLIP8.86□□□□□ -0.993e-7■■■■□ 19.7
ATG4A-201ENST00000343524 ZNF454Q8N9F8 522 aa8.86□□□□□ -0.99
ATG4A-201ENST00000343524 USP38Q8NB14 1042 aa8.86□□□□□ -0.99
ATG4A-201ENST00000343524 NGDNQ8NEJ9 315 aaKnown RBP8.86□□□□□ -0.99
ATG4A-201ENST00000343524 ATXN2LQ8WWM7 1075 aaKnown RBP8.86□□□□□ -0.99
ATG4A-201ENST00000343524 SYMPKQ92797 1274 aaKnown RBP8.86□□□□□ -0.99
ATG4A-201ENST00000343524 AIFM3Q96NN9 605 aa8.86□□□□□ -0.99
ATG4A-201ENST00000343524 IWS1Q96ST2 819 aa8.86□□□□□ -0.99
ATG4A-201ENST00000343524 UBAC1Q9BSL1 405 aa8.86□□□□□ -0.99
ATG4A-201ENST00000343524 TIPINQ9BVW5 301 aa8.86□□□□□ -0.99
ATG4A-201ENST00000343524 SLC26A6Q9BXS9 759 aa8.86□□□□□ -0.99
ATG4A-201ENST00000343524 EDEM3Q9BZQ6 932 aa8.86□□□□□ -0.99
ATG4A-201ENST00000343524 SLITRK6Q9H5Y7 841 aa8.86□□□□□ -0.99
ATG4A-201ENST00000343524 MLXIPQ9HAP2 919 aa8.86□□□□□ -0.99
ATG4A-201ENST00000343524 RXFP1Q9HBX9 757 aa8.86□□□□□ -0.99
ATG4A-201ENST00000343524 POLD4Q9HCU8 107 aa8.86□□□□□ -0.99
ATG4A-201ENST00000343524 INTS9Q9NV88 658 aaKnown RBP8.86□□□□□ -0.99
ATG4A-201ENST00000343524 TFCP2L1Q9NZI6 479 aa8.86□□□□□ -0.99
ATG4A-201ENST00000343524 CNOT8Q9UFF9 292 aaKnown RBP8.86□□□□□ -0.99
ATG4A-201ENST00000343524 LRCH1Q9Y2L9 728 aa8.86□□□□□ -0.99
ATG4A-201ENST00000343524 MROH7Q68CQ1 1323 aa8.85□□□□□ -0.99
ATG4A-201ENST00000343524 ESYT3A0FGR9 886 aa8.85□□□□□ -0.99
ATG4A-201ENST00000343524 RAD51CO43502 376 aa8.85□□□□□ -0.99
ATG4A-201ENST00000343524 UBOX5O94941 541 aa8.85□□□□□ -0.99
ATG4A-201ENST00000343524 OAS1P00973 400 aaKnown RBP8.85□□□□□ -0.99
ATG4A-201ENST00000343524 AGTP01019 485 aa8.85□□□□□ -0.99
ATG4A-201ENST00000343524 CCNB1P14635 433 aa8.85□□□□□ -0.99
ATG4A-201ENST00000343524 LIFRP42702 1097 aa8.85□□□□□ -0.99
ATG4A-201ENST00000343524 KCNJ2P63252 427 aa8.85□□□□□ -0.99
ATG4A-201ENST00000343524 GRIN1Q05586 938 aa8.85□□□□□ -0.99
ATG4A-201ENST00000343524 CTDSPL2Q05D32 466 aa8.85□□□□□ -0.99
ATG4A-201ENST00000343524 UAP1Q16222 522 aaPredicted RBP8.85□□□□□ -0.99
ATG4A-201ENST00000343524 NTRK3Q16288 839 aa8.85□□□□□ -0.99
ATG4A-201ENST00000343524 PPP2R5EQ16537 467 aa8.85□□□□□ -0.99
ATG4A-201ENST00000343524 RABL6Q3YEC7 729 aaPredicted RBP8.85□□□□□ -0.99
ATG4A-201ENST00000343524 SLC27A3Q5K4L6 730 aa8.85□□□□□ -0.99
ATG4A-201ENST00000343524 KLHDC7AQ5VTJ3 777 aa8.85□□□□□ -0.99
ATG4A-201ENST00000343524 MICU3Q86XE3 530 aa8.85□□□□□ -0.99
ATG4A-201ENST00000343524 RAB11FIP4Q86YS3 637 aa8.85□□□□□ -0.99
ATG4A-201ENST00000343524 MYLK4Q86YV6 388 aaPredicted RBP8.85□□□□□ -0.99
ATG4A-201ENST00000343524 SMYD4Q8IYR2 804 aaPredicted RBP8.85□□□□□ -0.99
ATG4A-201ENST00000343524 ENDOVQ8N8Q3 282 aaKnown RBP8.85□□□□□ -0.99
ATG4A-201ENST00000343524 WDR66Q8TBY9 1149 aa8.85□□□□□ -0.99
ATG4A-201ENST00000343524 STK32AQ8WU08 396 aa8.85□□□□□ -0.99
ATG4A-201ENST00000343524 DNAJC9Q8WXX5 260 aa8.85□□□□□ -0.99
ATG4A-201ENST00000343524 PHKBQ93100 1093 aa8.85□□□□□ -0.99
ATG4A-201ENST00000343524 KCTD12Q96CX2 325 aaKnown RBP8.85□□□□□ -0.99
ATG4A-201ENST00000343524 RBM17Q96I25 401 aaKnown RBP8.85□□□□□ -0.99
ATG4A-201ENST00000343524 INPP4AQ96PE3 977 aaPredicted RBP8.85□□□□□ -0.99
ATG4A-201ENST00000343524 MIS12Q9H081 205 aa8.85□□□□□ -0.99
ATG4A-201ENST00000343524 CYP39A1Q9NYL5 469 aa8.85□□□□□ -0.99
ATG4A-201ENST00000343524 TFR2Q9UP52 801 aa8.85□□□□□ -0.99
ATG4A-201ENST00000343524 PCDHB6Q9Y5E3 794 aa8.85□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms