RNA–Protein interactions for RNA: ENST00000342245.8

SMPD1-201, Transcript of sphingomyelin phosphodiesterase 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SMPD1, Length 2,452 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD1-201ENST00000342245 CYP39A1Q9NYL5 469 aa20.16■□□□□ 0.82
SMPD1-201ENST00000342245 PHF24Q9UPV7 400 aa20.16■□□□□ 0.82
SMPD1-201ENST00000342245 A8MUI8 341 aa20.16■□□□□ 0.82
SMPD1-201ENST00000342245 PENKP01210 267 aaPredicted RBP20.16■□□□□ 0.82
SMPD1-201ENST00000342245 USP11P51784 963 aa20.16■□□□□ 0.82
SMPD1-201ENST00000342245 SFSWAPQ12872 951 aaKnown RBP20.16■□□□□ 0.82
SMPD1-201ENST00000342245 PPP2R5EQ16537 467 aa20.16■□□□□ 0.82
SMPD1-201ENST00000342245 MAN2A1Q16706 1144 aa20.16■□□□□ 0.82
SMPD1-201ENST00000342245 EARS2Q5JPH6 523 aaKnown RBP20.16■□□□□ 0.82
SMPD1-201ENST00000342245 BTNL9Q6UXG8 535 aa20.16■□□□□ 0.82
SMPD1-201ENST00000342245 DDX42Q86XP3 938 aaKnown RBP eCLIP20.16■□□□□ 0.82
SMPD1-201ENST00000342245 FMO2Q99518 471 aa20.16■□□□□ 0.82
SMPD1-201ENST00000342245 TMEM109Q9BVC6 243 aa20.16■□□□□ 0.82
SMPD1-201ENST00000342245 VCX3BQ9H321 246 aa20.16■□□□□ 0.82
SMPD1-201ENST00000342245 MMRN2Q9H8L6 949 aa20.16■□□□□ 0.82
SMPD1-201ENST00000342245 VCX3AQ9NNX9 186 aa20.16■□□□□ 0.82
SMPD1-201ENST00000342245 KCNK3O14649 394 aa20.15■□□□□ 0.82
SMPD1-201ENST00000342245 DAPK3O43293 454 aa20.15■□□□□ 0.82
SMPD1-201ENST00000342245 TUBP50607 506 aa20.15■□□□□ 0.82
SMPD1-201ENST00000342245 PPARDQ03181 441 aa20.15■□□□□ 0.82
SMPD1-201ENST00000342245 ANKRD40Q6AI12 368 aa20.15■□□□□ 0.82
SMPD1-201ENST00000342245 MFSD6Q6ZSS7 791 aa20.15■□□□□ 0.82
SMPD1-201ENST00000342245 ZNF654Q8IZM8 581 aa20.15■□□□□ 0.82
SMPD1-201ENST00000342245 PLBD2Q8NHP8 589 aa20.15■□□□□ 0.82
SMPD1-201ENST00000342245 TBC1D16Q8TBP0 767 aa20.15■□□□□ 0.82
SMPD1-201ENST00000342245 KCNV2Q8TDN2 545 aa20.15■□□□□ 0.82
SMPD1-201ENST00000342245 FAM207AQ9NSI2 230 aaPredicted RBP20.15■□□□□ 0.82
SMPD1-201ENST00000342245 CNOT7Q9UIV1 285 aaKnown RBP20.15■□□□□ 0.82
SMPD1-201ENST00000342245 AXIN2Q9Y2T1 843 aa20.15■□□□□ 0.82
SMPD1-201ENST00000342245 ABCD1P33897 745 aa20.15■□□□□ 0.82
SMPD1-201ENST00000342245 FLT3P36888 993 aa20.15■□□□□ 0.82
SMPD1-201ENST00000342245 RAD23BP54727 409 aa20.15■□□□□ 0.82
SMPD1-201ENST00000342245 NLRP5P59047 1200 aa20.15■□□□□ 0.82
SMPD1-201ENST00000342245 TDRD12Q587J7 1177 aaKnown RBP20.15■□□□□ 0.82
SMPD1-201ENST00000342245 DENND2CQ68D51 928 aa20.15■□□□□ 0.82
SMPD1-201ENST00000342245 DPY19L2Q6NUT2 758 aa20.15■□□□□ 0.82
SMPD1-201ENST00000342245 LRP10Q7Z4F1 713 aa20.15■□□□□ 0.82
SMPD1-201ENST00000342245 AGGF1Q8N302 714 aaeCLIP20.15■□□□□ 0.82
SMPD1-201ENST00000342245 NEK9Q8TD19 979 aa20.15■□□□□ 0.82
SMPD1-201ENST00000342245 PIGOQ8TEQ8 1089 aa20.15■□□□□ 0.82
SMPD1-201ENST00000342245 ANKS1AQ92625 1134 aa20.15■□□□□ 0.82
SMPD1-201ENST00000342245 PABPC3Q9H361 631 aaKnown RBP20.15■□□□□ 0.82
SMPD1-201ENST00000342245 MKRN3Q13064 507 aaKnown RBP20.14■□□□□ 0.82
SMPD1-201ENST00000342245 HGSNATQ68CP4 663 aa20.14■□□□□ 0.82
SMPD1-201ENST00000342245 ZNF790Q6PG37 636 aa20.14■□□□□ 0.82
SMPD1-201ENST00000342245 CCDC82Q8N4S0 544 aa20.14■□□□□ 0.82
SMPD1-201ENST00000342245 DNAJC9Q8WXX5 260 aa20.14■□□□□ 0.82
SMPD1-201ENST00000342245 KBTBD4Q9NVX7 518 aa20.14■□□□□ 0.82
SMPD1-201ENST00000342245 MYH1P12882 1939 aa20.14■□□□□ 0.81
SMPD1-201ENST00000342245 PKD1L3Q7Z443 1732 aa20.14■□□□□ 0.81
SMPD1-201ENST00000342245 RXRBP28702 533 aa20.14■□□□□ 0.81
SMPD1-201ENST00000342245 HOXA7P31268 230 aaPredicted RBP20.14■□□□□ 0.81
SMPD1-201ENST00000342245 DNA2P51530 1060 aa20.14■□□□□ 0.81
SMPD1-201ENST00000342245 POLE2P56282 527 aa20.14■□□□□ 0.81
SMPD1-201ENST00000342245 TCIRG1Q13488 830 aa20.14■□□□□ 0.81
SMPD1-201ENST00000342245 ZRSR2Q15696 482 aaKnown RBP20.14■□□□□ 0.81
SMPD1-201ENST00000342245 OR52E8Q6IFG1 317 aa20.14■□□□□ 0.81
SMPD1-201ENST00000342245 KIF2BQ8N4N8 673 aa20.14■□□□□ 0.81
SMPD1-201ENST00000342245 RBBP8NLQ8NC74 664 aaPredicted RBP20.14■□□□□ 0.81
SMPD1-201ENST00000342245 ASAP3Q8TDY4 903 aa20.14■□□□□ 0.81
SMPD1-201ENST00000342245 A0A1B0GVG6 124 aa20.13■□□□□ 0.81
SMPD1-201ENST00000342245 CEP104O60308 925 aa20.13■□□□□ 0.81
SMPD1-201ENST00000342245 TPP2P29144 1249 aaPredicted RBP20.13■□□□□ 0.81
SMPD1-201ENST00000342245 RNASE9P60153 205 aaKnown RBP20.13■□□□□ 0.81
SMPD1-201ENST00000342245 WASHC2DQ5SRD0 308 aa20.13■□□□□ 0.81
SMPD1-201ENST00000342245 OPTNQ96CV9 577 aa20.13■□□□□ 0.81
SMPD1-201ENST00000342245 ZNF512BQ96KM6 892 aaPredicted RBP20.13■□□□□ 0.81
SMPD1-201ENST00000342245 RPS6KC1Q96S38 1066 aa20.13■□□□□ 0.81
SMPD1-201ENST00000342245 ZMYND12Q9H0C1 365 aa20.13■□□□□ 0.81
SMPD1-201ENST00000342245 ATXN10Q9UBB4 475 aa20.13■□□□□ 0.81
SMPD1-201ENST00000342245 G3BP2Q9UN86 482 aaKnown RBP20.13■□□□□ 0.81
SMPD1-201ENST00000342245 SLC4A7Q9Y6M7 1214 aa20.13■□□□□ 0.81
SMPD1-201ENST00000342245 KRIT1O00522 736 aa20.13■□□□□ 0.81
SMPD1-201ENST00000342245 UNC5CO95185 931 aa20.13■□□□□ 0.81
SMPD1-201ENST00000342245 PDHA1P08559 390 aa20.13■□□□□ 0.81
SMPD1-201ENST00000342245 TPBGLP0DKB5 382 aa20.13■□□□□ 0.81
SMPD1-201ENST00000342245 KLRC1P26715 233 aa20.13■□□□□ 0.81
SMPD1-201ENST00000342245 USP4Q13107 963 aa20.13■□□□□ 0.81
SMPD1-201ENST00000342245 SLC18A3Q16572 532 aa20.13■□□□□ 0.81
SMPD1-201ENST00000342245 ACBD5Q5T8D3 534 aaPredicted RBP20.13■□□□□ 0.81
SMPD1-201ENST00000342245 SFMBT2Q5VUG0 894 aa20.13■□□□□ 0.81
SMPD1-201ENST00000342245 RNF43Q68DV7 783 aa20.13■□□□□ 0.81
SMPD1-201ENST00000342245 LCA5Q86VQ0 697 aa20.13■□□□□ 0.81
SMPD1-201ENST00000342245 LZICQ8WZA0 190 aa20.13■□□□□ 0.81
SMPD1-201ENST00000342245 TMEM237Q96Q45 408 aa20.13■□□□□ 0.81
SMPD1-201ENST00000342245 NAPBQ9H115 298 aa20.13■□□□□ 0.81
SMPD1-201ENST00000342245 DLGAP2Q9P1A6 1054 aa20.13■□□□□ 0.81
SMPD1-201ENST00000342245 TMCO1Q9UM00 188 aa20.13■□□□□ 0.81
SMPD1-201ENST00000342245 ATP8A1Q9Y2Q0 1164 aa20.13■□□□□ 0.81
SMPD1-201ENST00000342245 ATP5J2-PTCD1G3V325 749 aa20.12■□□□□ 0.81
SMPD1-201ENST00000342245 MAP3K13O43283 966 aa20.12■□□□□ 0.81
SMPD1-201ENST00000342245 PTCD1O75127 700 aaKnown RBP20.12■□□□□ 0.81
SMPD1-201ENST00000342245 ZPR1O75312 459 aa20.12■□□□□ 0.81
SMPD1-201ENST00000342245 PKN1Q16512 942 aa20.12■□□□□ 0.81
SMPD1-201ENST00000342245 DNAAF2Q9NVR5 837 aaKnown RBP20.12■□□□□ 0.81
SMPD1-201ENST00000342245 LRCH1Q9Y2L9 728 aa20.12■□□□□ 0.81
SMPD1-201ENST00000342245 PHRF1Q9P1Y6 1649 aaKnown RBP20.12■□□□□ 0.81
SMPD1-201ENST00000342245 CNGA2Q16280 664 aa20.12■□□□□ 0.81
SMPD1-201ENST00000342245 IL17AQ16552 155 aa20.12■□□□□ 0.81
SMPD1-201ENST00000342245 PABPC1LQ4VXU2 614 aaKnown RBP20.12■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms