RNA–Protein interactions for RNA: ENST00000341485.9

TPM3-208, Transcript of tropomyosin 3, humanhuman

TSL 1 (best) BASIC

Gene TPM3, Length 2,063 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM3-208ENST00000341485 NT5C3AQ9H0P0 336 aa16.61■□□□□ 0.25
TPM3-208ENST00000341485 ARFGAP3Q9NP61 516 aa16.61■□□□□ 0.25
TPM3-208ENST00000341485 PANK4Q9NVE7 773 aa16.61■□□□□ 0.25
TPM3-208ENST00000341485 KIAA1024Q9UPX6 916 aa16.61■□□□□ 0.25
TPM3-208ENST00000341485 SNCAIPQ9Y6H5 919 aa16.61■□□□□ 0.25
TPM3-208ENST00000341485 POTEB3A0JP26 581 aa16.6■□□□□ 0.25
TPM3-208ENST00000341485 POTECB2RU33 542 aa16.6■□□□□ 0.25
TPM3-208ENST00000341485 SSBP05455 408 aaKnown RBP eCLIP16.6■□□□□ 0.25
TPM3-208ENST00000341485 HNRNPH3P31942 346 aaKnown RBP16.6■□□□□ 0.25
TPM3-208ENST00000341485 ARHGAP4P98171 946 aa16.6■□□□□ 0.25
TPM3-208ENST00000341485 FAM26FQ5R3K3 315 aa16.6■□□□□ 0.25
TPM3-208ENST00000341485 POTEBQ6S5H4 581 aa16.6■□□□□ 0.25
TPM3-208ENST00000341485 TRAPPC11Q7Z392 1133 aa16.6■□□□□ 0.25
TPM3-208ENST00000341485 AFG3L2Q9Y4W6 797 aa16.6■□□□□ 0.25
TPM3-208ENST00000341485 UTRNP46939 3433 aa16.6■□□□□ 0.25
TPM3-208ENST00000341485 CTAGE15A4D2H0 777 aa16.6■□□□□ 0.25
TPM3-208ENST00000341485 CCDC151A5D8V7 595 aa16.6■□□□□ 0.25
TPM3-208ENST00000341485 PLA2G4BP0C869 781 aa16.6■□□□□ 0.25
TPM3-208ENST00000341485 CTAGE8P0CG41 777 aa16.6■□□□□ 0.25
TPM3-208ENST00000341485 STAT3P40763 770 aa16.6■□□□□ 0.25
TPM3-208ENST00000341485 BRD3Q15059 726 aa16.6■□□□□ 0.25
TPM3-208ENST00000341485 TERF2Q15554 542 aa16.6■□□□□ 0.25
TPM3-208ENST00000341485 NCAPH2Q6IBW4 605 aa16.6■□□□□ 0.25
TPM3-208ENST00000341485 CTAGE6Q86UF2 777 aa16.6■□□□□ 0.25
TPM3-208ENST00000341485 PNMA8AQ86V59 439 aaPredicted RBP16.6■□□□□ 0.25
TPM3-208ENST00000341485 CTAGE4Q8IX94 777 aa16.6■□□□□ 0.25
TPM3-208ENST00000341485 CRYGNQ8WXF5 182 aa16.6■□□□□ 0.25
TPM3-208ENST00000341485 PNKPQ96T60 521 aa16.6■□□□□ 0.25
TPM3-208ENST00000341485 SLC38A10Q9HBR0 1119 aa16.6■□□□□ 0.25
TPM3-208ENST00000341485 RAVER2Q9HCJ3 691 aaKnown RBP16.6■□□□□ 0.25
TPM3-208ENST00000341485 FAM207AQ9NSI2 230 aaPredicted RBP16.6■□□□□ 0.25
TPM3-208ENST00000341485 RAB21Q9UL25 225 aa16.6■□□□□ 0.25
TPM3-208ENST00000341485 CLEC11AQ9Y240 323 aa16.6■□□□□ 0.25
TPM3-208ENST00000341485 PCDHA2Q9Y5H9 948 aa16.6■□□□□ 0.25
TPM3-208ENST00000341485 ZNF536O15090 1300 aa16.59■□□□□ 0.25
TPM3-208ENST00000341485 NPHP3-ACAD11A0A0J9YXS1 232 aa16.59■□□□□ 0.25
TPM3-208ENST00000341485 POTEB2H3BUK9 544 aa16.59■□□□□ 0.25
TPM3-208ENST00000341485 ENC1O14682 589 aa16.59■□□□□ 0.25
TPM3-208ENST00000341485 ZNF263O14978 683 aa16.59■□□□□ 0.25
TPM3-208ENST00000341485 ATP1A1P05023 1023 aaKnown RBP16.59■□□□□ 0.25
TPM3-208ENST00000341485 PLEKP08567 350 aaPredicted RBP16.59■□□□□ 0.25
TPM3-208ENST00000341485 FDX1P10109 184 aa16.59■□□□□ 0.25
TPM3-208ENST00000341485 CYP27A1Q02318 531 aa16.59■□□□□ 0.25
TPM3-208ENST00000341485 MOXD1Q6UVY6 613 aa16.59■□□□□ 0.25
TPM3-208ENST00000341485 RBM46Q8TBY0 533 aaKnown RBP16.59■□□□□ 0.25
TPM3-208ENST00000341485 EHMT1Q9H9B1 1298 aa16.59■□□□□ 0.25
TPM3-208ENST00000341485 HDAC6Q9UBN7 1215 aa16.59■□□□□ 0.25
TPM3-208ENST00000341485 PLAGL2Q9UPG8 496 aa16.59■□□□□ 0.25
TPM3-208ENST00000341485 SMCHD1A6NHR9 2005 aa16.59■□□□□ 0.25
TPM3-208ENST00000341485 SLC26A4O43511 780 aa16.58■□□□□ 0.25
TPM3-208ENST00000341485 KRT86O43790 486 aa16.58■□□□□ 0.25
TPM3-208ENST00000341485 MED24O75448 989 aa16.58■□□□□ 0.25
TPM3-208ENST00000341485 ALAS1P13196 640 aa16.58■□□□□ 0.25
TPM3-208ENST00000341485 ERCC3P19447 782 aa16.58■□□□□ 0.25
TPM3-208ENST00000341485 SREBF1P36956 1147 aa16.58■□□□□ 0.25
TPM3-208ENST00000341485 TUBB4BP68371 445 aa16.58■□□□□ 0.25
TPM3-208ENST00000341485 GPBP1Q86WP2 473 aa16.58■□□□□ 0.25
TPM3-208ENST00000341485 TBC1D5Q92609 795 aa16.58■□□□□ 0.25
TPM3-208ENST00000341485 PURBQ96QR8 312 aaKnown RBP16.58■□□□□ 0.25
TPM3-208ENST00000341485 FUT8Q9BYC5 575 aa16.58■□□□□ 0.25
TPM3-208ENST00000341485 UBXN6Q9BZV1 441 aa16.58■□□□□ 0.25
TPM3-208ENST00000341485 MMRN2Q9H8L6 949 aa16.58■□□□□ 0.25
TPM3-208ENST00000341485 TBC1D7Q9P0N9 293 aa16.58■□□□□ 0.25
TPM3-208ENST00000341485 PNMA2Q9UL42 364 aa16.58■□□□□ 0.25
TPM3-208ENST00000341485 OTOFQ9HC10 1997 aa16.58■□□□□ 0.24
TPM3-208ENST00000341485 IPO7O95373 1038 aaKnown RBP16.58■□□□□ 0.24
TPM3-208ENST00000341485 CYP11B2P19099 503 aa16.58■□□□□ 0.24
TPM3-208ENST00000341485 ZNF76P36508 570 aa16.58■□□□□ 0.24
TPM3-208ENST00000341485 CACNB1Q02641 598 aaPredicted RBP16.58■□□□□ 0.24
TPM3-208ENST00000341485 LONRF2Q1L5Z9 754 aa16.58■□□□□ 0.24
TPM3-208ENST00000341485 PAPD7Q5XG87 772 aaKnown RBP16.58■□□□□ 0.24
TPM3-208ENST00000341485 CCDC65Q8IXS2 484 aa16.58■□□□□ 0.24
TPM3-208ENST00000341485 ETNPPLQ8TBG4 499 aa16.58■□□□□ 0.24
TPM3-208ENST00000341485 ATG4CQ96DT6 458 aa16.58■□□□□ 0.24
TPM3-208ENST00000341485 ELP3Q9H9T3 547 aa16.58■□□□□ 0.24
TPM3-208ENST00000341485 BMP2KQ9NSY1 1161 aaPredicted RBP16.58■□□□□ 0.24
TPM3-208ENST00000341485 ARHGAP20Q9P2F6 1191 aa16.58■□□□□ 0.24
TPM3-208ENST00000341485 WDR90Q96KV7 1748 aa16.57■□□□□ 0.24
TPM3-208ENST00000341485 VAV2P52735 878 aa16.57■□□□□ 0.24
TPM3-208ENST00000341485 SPIRE1Q08AE8 756 aa16.57■□□□□ 0.24
TPM3-208ENST00000341485 MCF2L2Q86YR7 1114 aa16.57■□□□□ 0.24
TPM3-208ENST00000341485 SLFN12Q8IYM2 578 aa16.57■□□□□ 0.24
TPM3-208ENST00000341485 ANKRD13AQ8IZ07 590 aa16.57■□□□□ 0.24
TPM3-208ENST00000341485 NOA1Q8NC60 698 aaKnown RBP16.57■□□□□ 0.24
TPM3-208ENST00000341485 EHBP1Q8NDI1 1231 aa16.57■□□□□ 0.24
TPM3-208ENST00000341485 BAP1Q92560 729 aa16.57■□□□□ 0.24
TPM3-208ENST00000341485 CCDC42Q96M95 316 aa16.57■□□□□ 0.24
TPM3-208ENST00000341485 COL4A3BPQ9Y5P4 624 aa16.57■□□□□ 0.24
TPM3-208ENST00000341485 DUSP10Q9Y6W6 482 aa16.57■□□□□ 0.24
TPM3-208ENST00000341485 VWA5AO00534 786 aa16.57■□□□□ 0.24
TPM3-208ENST00000341485 RHOXF2BP0C7M4 288 aa16.57■□□□□ 0.24
TPM3-208ENST00000341485 SLC12A3P55017 1021 aa16.57■□□□□ 0.24
TPM3-208ENST00000341485 FKBP3Q00688 224 aaKnown RBP16.57■□□□□ 0.24
TPM3-208ENST00000341485 PRR16Q569H4 304 aa16.57■□□□□ 0.24
TPM3-208ENST00000341485 SH3D19Q5HYK7 790 aa16.57■□□□□ 0.24
TPM3-208ENST00000341485 CCDC155Q8N6L0 562 aa16.57■□□□□ 0.24
TPM3-208ENST00000341485 HNRNPLLQ8WVV9 542 aaKnown RBP16.57■□□□□ 0.24
TPM3-208ENST00000341485 RHOXF2Q9BQY4 288 aa16.57■□□□□ 0.24
TPM3-208ENST00000341485 HOMER2Q9NSB8 354 aa16.57■□□□□ 0.24
TPM3-208ENST00000341485 PAPPA2Q9BXP8 1791 aa16.56■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms