RNA–Protein interactions for RNA: ENST00000338963.6

NEDD4-201, Transcript of neural precursor cell expressed, developmentally down-regulated 4, E3 ubiquitin protein ligase, humanhuman

TSL 1 (best) BASIC

Gene NEDD4, Length 7,019 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD4-201ENST00000338963 SLC34A1Q06495 639 aa4.48□□□□□ -1.69
NEDD4-201ENST00000338963 OR52E8Q6IFG1 317 aa4.48□□□□□ -1.69
NEDD4-201ENST00000338963 ZC3H18Q86VM9 953 aaKnown RBP4.48□□□□□ -1.69
NEDD4-201ENST00000338963 CHAMP1Q96JM3 812 aa4.48□□□□□ -1.69
NEDD4-201ENST00000338963 HGH1Q9BTY7 390 aa4.48□□□□□ -1.69
NEDD4-201ENST00000338963 LRMDAQ9H2I8 198 aa4.48□□□□□ -1.69
NEDD4-201ENST00000338963 ADAM22Q9P0K1 906 aa4.48□□□□□ -1.69
NEDD4-201ENST00000338963 KIF17Q9P2E2 1029 aa4.48□□□□□ -1.69
NEDD4-201ENST00000338963 DNAJC12Q9UKB3 198 aa4.48□□□□□ -1.69
NEDD4-201ENST00000338963 EID1Q9Y6B2 187 aa4.48□□□□□ -1.69
NEDD4-201ENST00000338963 LMTK2Q8IWU2 1503 aa4.48□□□□□ -1.69
NEDD4-201ENST00000338963 SPDYE5A6NIY4 337 aa4.48□□□□□ -1.69
NEDD4-201ENST00000338963 NDUFB5O43674 189 aa4.48□□□□□ -1.69
NEDD4-201ENST00000338963 CTNND1O60716 968 aaKnown RBP4.48□□□□□ -1.69
NEDD4-201ENST00000338963 DRD4P21917 467 aa4.48□□□□□ -1.69
NEDD4-201ENST00000338963 KIF23Q02241 960 aaPredicted RBP4.48□□□□□ -1.69
NEDD4-201ENST00000338963 RESTQ13127 1097 aa4.48□□□□□ -1.69
NEDD4-201ENST00000338963 NFE2L1Q14494 772 aa4.48□□□□□ -1.69
NEDD4-201ENST00000338963 AGAP9Q5VTM2 703 aa4.48□□□□□ -1.69
NEDD4-201ENST00000338963 RWDD4Q6NW29 188 aaKnown RBP4.48□□□□□ -1.69
NEDD4-201ENST00000338963 AFAP1L2Q8N4X5 818 aa4.48□□□□□ -1.69
NEDD4-201ENST00000338963 ESX1Q8N693 406 aa4.48□□□□□ -1.69
NEDD4-201ENST00000338963 ENGASEQ8NFI3 743 aa4.48□□□□□ -1.69
NEDD4-201ENST00000338963 SCFD1Q8WVM8 642 aa4.48□□□□□ -1.69
NEDD4-201ENST00000338963 ZIM3Q96PE6 472 aa4.48□□□□□ -1.69
NEDD4-201ENST00000338963 MAP3K14Q99558 947 aa4.48□□□□□ -1.69
NEDD4-201ENST00000338963 DDX47Q9H0S4 455 aaKnown RBP4.48□□□□□ -1.69
NEDD4-201ENST00000338963 FGFR1OP2Q9NVK5 253 aa4.48□□□□□ -1.69
NEDD4-201ENST00000338963 TNNQ9UQP3 1299 aa4.48□□□□□ -1.69
NEDD4-201ENST00000338963 DMTF1Q9Y222 760 aa4.48□□□□□ -1.69
NEDD4-201ENST00000338963 PTPRTO14522 1441 aa4.48□□□□□ -1.69
NEDD4-201ENST00000338963 PITPNM2Q9BZ72 1349 aa4.48□□□□□ -1.69
NEDD4-201ENST00000338963 PZPP20742 1482 aa4.48□□□□□ -1.69
NEDD4-201ENST00000338963 A8MXQ7 604 aa4.48□□□□□ -1.69
NEDD4-201ENST00000338963 PABPC4LP0CB38 370 aaKnown RBP4.48□□□□□ -1.69
NEDD4-201ENST00000338963 CSTF2P33240 577 aaKnown RBP eCLIP4.48□□□□□ -1.69
NEDD4-201ENST00000338963 ALDH5A1P51649 535 aaPredicted RBP4.48□□□□□ -1.69
NEDD4-201ENST00000338963 GPC3P51654 580 aa4.48□□□□□ -1.69
NEDD4-201ENST00000338963 ARHGAP4P98171 946 aa4.48□□□□□ -1.69
NEDD4-201ENST00000338963 NIPAL1Q6NVV3 410 aa4.48□□□□□ -1.69
NEDD4-201ENST00000338963 CHCHD4Q8N4Q1 142 aa4.48□□□□□ -1.69
NEDD4-201ENST00000338963 ZNF333Q96JL9 665 aa4.48□□□□□ -1.69
NEDD4-201ENST00000338963 THAP9Q9H5L6 903 aa4.48□□□□□ -1.69
NEDD4-201ENST00000338963 CCDC134Q9H6E4 229 aa4.48□□□□□ -1.69
NEDD4-201ENST00000338963 SUGCTQ9HAC7 445 aa4.48□□□□□ -1.69
NEDD4-201ENST00000338963 RSL24D1Q9UHA3 163 aaKnown RBP4.48□□□□□ -1.69
NEDD4-201ENST00000338963 CCPG1Q9ULG6 757 aa4.48□□□□□ -1.69
NEDD4-201ENST00000338963 IQGAP2Q13576 1575 aa4.48□□□□□ -1.69
NEDD4-201ENST00000338963 CLTCL1P53675 1640 aa4.48□□□□□ -1.69
NEDD4-201ENST00000338963 A0A0J9YVX5 310 aa4.48□□□□□ -1.69
NEDD4-201ENST00000338963 OPLAHO14841 1288 aa4.48□□□□□ -1.69
NEDD4-201ENST00000338963 MTA2O94776 668 aa4.48□□□□□ -1.69
NEDD4-201ENST00000338963 MARK3P27448 753 aa4.48□□□□□ -1.69
NEDD4-201ENST00000338963 SEC24CP53992 1094 aa4.48□□□□□ -1.69
NEDD4-201ENST00000338963 AP1B1Q10567 949 aa4.48□□□□□ -1.69
NEDD4-201ENST00000338963 RNF220Q5VTB9 566 aa4.48□□□□□ -1.69
NEDD4-201ENST00000338963 GRAMD2AQ8IUY3 354 aa4.48□□□□□ -1.69
NEDD4-201ENST00000338963 LURAP1LQ8IV03 231 aa4.48□□□□□ -1.69
NEDD4-201ENST00000338963 TMEM139Q8IV31 216 aa4.48□□□□□ -1.69
NEDD4-201ENST00000338963 CCDC89Q8N998 374 aa4.48□□□□□ -1.69
NEDD4-201ENST00000338963 UHMK1Q8TAS1 419 aaKnown RBP4.48□□□□□ -1.69
NEDD4-201ENST00000338963 SLC7A5P2Q9GIP4 190 aa4.48□□□□□ -1.69
NEDD4-201ENST00000338963 MRPL44Q9H9J2 332 aaKnown RBP4.48□□□□□ -1.69
NEDD4-201ENST00000338963 TRAF3IP3Q9Y228 551 aa4.48□□□□□ -1.69
NEDD4-201ENST00000338963 IQSEC2Q5JU85 1478 aa4.47□□□□□ -1.69
NEDD4-201ENST00000338963 PVALEFA0A1B0GWK0 134 aa4.47□□□□□ -1.69
NEDD4-201ENST00000338963 E9PBE3 544 aa4.47□□□□□ -1.69
NEDD4-201ENST00000338963 RASGRF2O14827 1237 aa4.47□□□□□ -1.69
NEDD4-201ENST00000338963 PEX14O75381 377 aa4.47□□□□□ -1.69
NEDD4-201ENST00000338963 NFKBIAP25963 317 aa4.47□□□□□ -1.69
NEDD4-201ENST00000338963 HSPA13P48723 471 aa4.47□□□□□ -1.69
NEDD4-201ENST00000338963 DLG4P78352 724 aa4.47□□□□□ -1.69
NEDD4-201ENST00000338963 ME3Q16798 604 aa4.47□□□□□ -1.69
NEDD4-201ENST00000338963 HERC4Q5GLZ8 1057 aaPredicted RBP4.47□□□□□ -1.69
NEDD4-201ENST00000338963 WDR45BQ5MNZ6 344 aa4.47□□□□□ -1.69
NEDD4-201ENST00000338963 NDUFAF5Q5TEU4 345 aa4.47□□□□□ -1.69
NEDD4-201ENST00000338963 KCTD16Q68DU8 428 aa4.47□□□□□ -1.69
NEDD4-201ENST00000338963 BORAQ6PGQ7 559 aa4.47□□□□□ -1.69
NEDD4-201ENST00000338963 ZNF804AQ7Z570 1209 aa4.47□□□□□ -1.69
NEDD4-201ENST00000338963 NET1Q7Z628 596 aaPredicted RBP4.47□□□□□ -1.69
NEDD4-201ENST00000338963 LONP2Q86WA8 852 aa4.47□□□□□ -1.69
NEDD4-201ENST00000338963 NELFCDQ8IXH7 590 aa4.47□□□□□ -1.69
NEDD4-201ENST00000338963 BBS5Q8N3I7 341 aa4.47□□□□□ -1.69
NEDD4-201ENST00000338963 NOA1Q8NC60 698 aaKnown RBP4.47□□□□□ -1.69
NEDD4-201ENST00000338963 RAPGEF4Q8WZA2 1011 aa4.47□□□□□ -1.69
NEDD4-201ENST00000338963 RPGRQ92834 1020 aaKnown RBP4.47□□□□□ -1.69
NEDD4-201ENST00000338963 ARL8AQ96BM9 186 aa4.47□□□□□ -1.69
NEDD4-201ENST00000338963 SDCCAG3Q96C92 435 aa4.47□□□□□ -1.69
NEDD4-201ENST00000338963 SGF29Q96ES7 293 aa4.47□□□□□ -1.69
NEDD4-201ENST00000338963 C8orf48Q96LL4 319 aa4.47□□□□□ -1.69
NEDD4-201ENST00000338963 SYT15Q9BQS2 421 aa4.47□□□□□ -1.69
NEDD4-201ENST00000338963 EHMT1Q9H9B1 1298 aa4.47□□□□□ -1.69
NEDD4-201ENST00000338963 EMC3Q9P0I2 261 aa4.47□□□□□ -1.69
NEDD4-201ENST00000338963 SHROOM2Q13796 1616 aa4.47□□□□□ -1.69
NEDD4-201ENST00000338963 NOTOA8MTQ0 251 aa4.47□□□□□ -1.69
NEDD4-201ENST00000338963 HNRNPCL2B2RXH8 293 aa4.47□□□□□ -1.69
NEDD4-201ENST00000338963 UBTFL6P0CB48 400 aaPredicted RBP4.47□□□□□ -1.69
NEDD4-201ENST00000338963 VCLP18206 1134 aa4.47□□□□□ -1.69
NEDD4-201ENST00000338963 HOXA7P31268 230 aaPredicted RBP4.47□□□□□ -1.69
NEDD4-201ENST00000338963 SLC2A7Q6PXP3 512 aa4.47□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 369.8 ms