RNA–Protein interactions for RNA: ENST00000338850.5

RTN3-201, Transcript of reticulon 3, humanhuman

TSL 2

Gene RTN3, Length 493 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-201ENST00000338850 TUBGCP2Q9BSJ2 902 aa11.96□□□□□ -0.49
RTN3-201ENST00000338850 AS3MTQ9HBK9 375 aa11.96□□□□□ -0.49
RTN3-201ENST00000338850 SEC63Q9UGP8 760 aaKnown RBP11.96□□□□□ -0.49
RTN3-201ENST00000338850 SAP30BPQ9UHR5 308 aaKnown RBP11.96□□□□□ -0.49
RTN3-201ENST00000338850 ZHX1Q9UKY1 873 aaPredicted RBP11.96□□□□□ -0.49
RTN3-201ENST00000338850 LOC285556D6RIA3 1793 aa11.96□□□□□ -0.49
RTN3-201ENST00000338850 IGKV6D-41A0A0C4DH26 115 aa11.95□□□□□ -0.5
RTN3-201ENST00000338850 ADCY3O60266 1144 aa11.95□□□□□ -0.5
RTN3-201ENST00000338850 GDF11O95390 407 aa11.95□□□□□ -0.5
RTN3-201ENST00000338850 GJB1P08034 283 aa11.95□□□□□ -0.5
RTN3-201ENST00000338850 ASNSP08243 561 aa11.95□□□□□ -0.5
RTN3-201ENST00000338850 GCFC2P16383 781 aaKnown RBP11.95□□□□□ -0.5
RTN3-201ENST00000338850 CDK8P49336 464 aa11.95□□□□□ -0.5
RTN3-201ENST00000338850 AARSP49588 968 aaKnown RBP eCLIP11.95□□□□□ -0.5
RTN3-201ENST00000338850 VAV2P52735 878 aa11.95□□□□□ -0.5
RTN3-201ENST00000338850 NAPAP54920 295 aa11.95□□□□□ -0.5
RTN3-201ENST00000338850 EHHADHQ08426 723 aa11.95□□□□□ -0.5
RTN3-201ENST00000338850 PABPC4Q13310 644 aaKnown RBP eCLIP11.95□□□□□ -0.5
RTN3-201ENST00000338850 IRF5Q13568 498 aa11.95□□□□□ -0.5
RTN3-201ENST00000338850 TMEM266Q2M3C6 531 aa11.95□□□□□ -0.5
RTN3-201ENST00000338850 HYIQ5T013 277 aa11.95□□□□□ -0.5
RTN3-201ENST00000338850 FKBP15Q5T1M5 1219 aa11.95□□□□□ -0.5
RTN3-201ENST00000338850 HEATR3Q7Z4Q2 680 aa11.95□□□□□ -0.5
RTN3-201ENST00000338850 REXO1Q8N1G1 1221 aaKnown RBP11.95□□□□□ -0.5
RTN3-201ENST00000338850 CSGALNACT2Q8N6G5 542 aa11.95□□□□□ -0.5
RTN3-201ENST00000338850 FAM71BQ8TC56 605 aa11.95□□□□□ -0.5
RTN3-201ENST00000338850 CNOT6LQ96LI5 555 aaKnown RBP11.95□□□□□ -0.5
RTN3-201ENST00000338850 NUCKS1Q9H1E3 243 aaKnown RBP11.95□□□□□ -0.5
RTN3-201ENST00000338850 ASCC2Q9H1I8 757 aaPredicted RBP11.95□□□□□ -0.5
RTN3-201ENST00000338850 RIC8AQ9NPQ8 531 aa11.95□□□□□ -0.5
RTN3-201ENST00000338850 GINM1Q9NU53 330 aa11.95□□□□□ -0.5
RTN3-201ENST00000338850 BIN2Q9UBW5 565 aaPredicted RBP11.95□□□□□ -0.5
RTN3-201ENST00000338850 PLAGL2Q9UPG8 496 aa11.95□□□□□ -0.5
RTN3-201ENST00000338850 MKI67P46013 3256 aaKnown RBP11.95□□□□□ -0.5
RTN3-201ENST00000338850 LOXHD1Q8IVV2 1947 aa11.94□□□□□ -0.5
RTN3-201ENST00000338850 MGAMO43451 1857 aa11.94□□□□□ -0.5
RTN3-201ENST00000338850 RNF225M0QZC1 329 aaPredicted RBP11.94□□□□□ -0.5
RTN3-201ENST00000338850 ADAMTS3O15072 1205 aa11.94□□□□□ -0.5
RTN3-201ENST00000338850 PJA2O43164 708 aa11.94□□□□□ -0.5
RTN3-201ENST00000338850 SEC31AO94979 1220 aaKnown RBP11.94□□□□□ -0.5
RTN3-201ENST00000338850 HLA-DOAP06340 250 aa11.94□□□□□ -0.5
RTN3-201ENST00000338850 ELNP15502 786 aa11.94□□□□□ -0.5
RTN3-201ENST00000338850 GJA8P48165 433 aa11.94□□□□□ -0.5
RTN3-201ENST00000338850 GCLCP48506 637 aaPredicted RBP11.94□□□□□ -0.5
RTN3-201ENST00000338850 USP14P54578 494 aa11.94□□□□□ -0.5
RTN3-201ENST00000338850 BACE1P56817 501 aa11.94□□□□□ -0.5
RTN3-201ENST00000338850 HERVK_113P62684 666 aa11.94□□□□□ -0.5
RTN3-201ENST00000338850 UBXN2AP68543 259 aa11.94□□□□□ -0.5
RTN3-201ENST00000338850 GABPAQ06546 454 aa11.94□□□□□ -0.5
RTN3-201ENST00000338850 PDE4DQ08499 809 aa11.94□□□□□ -0.5
RTN3-201ENST00000338850 MTMR2Q13614 643 aa11.94□□□□□ -0.5
RTN3-201ENST00000338850 MAN2A1Q16706 1144 aa11.94□□□□□ -0.5
RTN3-201ENST00000338850 TMEM119Q4V9L6 283 aa11.94□□□□□ -0.5
RTN3-201ENST00000338850 MIIPQ5JXC2 388 aa11.94□□□□□ -0.5
RTN3-201ENST00000338850 MCTP2Q6DN12 878 aa11.94□□□□□ -0.5
RTN3-201ENST00000338850 PPP4R3AQ6IN85 833 aa11.94□□□□□ -0.5
RTN3-201ENST00000338850 KCTD17Q8N5Z5 321 aa11.94□□□□□ -0.5
RTN3-201ENST00000338850 TRIM58Q8NG06 486 aa11.94□□□□□ -0.5
RTN3-201ENST00000338850 RASSF8Q8NHQ8 419 aa11.94□□□□□ -0.5
RTN3-201ENST00000338850 PXYLP1Q8TE99 480 aa11.94□□□□□ -0.5
RTN3-201ENST00000338850 CPLX3Q8WVH0 158 aa11.94□□□□□ -0.5
RTN3-201ENST00000338850 SYN2Q92777 582 aaPredicted RBP11.94□□□□□ -0.5
RTN3-201ENST00000338850 STAMQ92783 540 aa11.94□□□□□ -0.5
RTN3-201ENST00000338850 SLF1Q9BQI6 1058 aa11.94□□□□□ -0.5
RTN3-201ENST00000338850 TRIM34Q9BYJ4 488 aa11.94□□□□□ -0.5
RTN3-201ENST00000338850 IRX2Q9BZI1 471 aaPredicted RBP11.94□□□□□ -0.5
RTN3-201ENST00000338850 TSPYL1Q9H0U9 437 aa11.94□□□□□ -0.5
RTN3-201ENST00000338850 RNF208Q9H0X6 261 aa11.94□□□□□ -0.5
RTN3-201ENST00000338850 UNC93B1Q9H1C4 597 aa11.94□□□□□ -0.5
RTN3-201ENST00000338850 SWAP70Q9UH65 585 aa11.94□□□□□ -0.5
RTN3-201ENST00000338850 ZBTB21Q9ULJ3 1066 aa11.94□□□□□ -0.5
RTN3-201ENST00000338850 SAR1BQ9Y6B6 198 aa11.94□□□□□ -0.5
RTN3-201ENST00000338850 CEP290O15078 2479 aa11.94□□□□□ -0.5
RTN3-201ENST00000338850 KDM3AQ9Y4C1 1321 aa11.93□□□□□ -0.5
RTN3-201ENST00000338850 BRCA2P51587 3418 aa11.93□□□□□ -0.5
RTN3-201ENST00000338850 SSU72P8A0A1W2PR75 194 aa11.93□□□□□ -0.5
RTN3-201ENST00000338850 TRIM49BA6NDI0 452 aa11.93□□□□□ -0.5
RTN3-201ENST00000338850 SMCO2A6NFE2 343 aa11.93□□□□□ -0.5
RTN3-201ENST00000338850 INHAP05111 366 aa11.93□□□□□ -0.5
RTN3-201ENST00000338850 PMS1P54277 932 aaKnown RBP11.93□□□□□ -0.5
RTN3-201ENST00000338850 MARSP56192 900 aaKnown RBP11.93□□□□□ -0.5
RTN3-201ENST00000338850 EVX2Q03828 476 aa11.93□□□□□ -0.5
RTN3-201ENST00000338850 MAPK8IP2Q13387 824 aaPredicted RBP11.93□□□□□ -0.5
RTN3-201ENST00000338850 MOXD1Q6UVY6 613 aa11.93□□□□□ -0.5
RTN3-201ENST00000338850 SV2BQ7L1I2 683 aa11.93□□□□□ -0.5
RTN3-201ENST00000338850 UBE2Q1Q7Z7E8 422 aa11.93□□□□□ -0.5
RTN3-201ENST00000338850 ZC3H3Q8IXZ2 948 aaKnown RBP11.93□□□□□ -0.5
RTN3-201ENST00000338850 RASGRP4Q8TDF6 673 aa11.93□□□□□ -0.5
RTN3-201ENST00000338850 JAKMIP2Q96AA8 810 aa11.93□□□□□ -0.5
RTN3-201ENST00000338850 COA7Q96BR5 231 aa11.93□□□□□ -0.5
RTN3-201ENST00000338850 CHP1Q99653 195 aa11.93□□□□□ -0.5
RTN3-201ENST00000338850 MMTAG2Q9BU76 263 aaKnown RBP11.93□□□□□ -0.5
RTN3-201ENST00000338850 MORF4L1Q9UBU8 362 aa11.93□□□□□ -0.5
RTN3-201ENST00000338850 SIK3Q9Y2K2 1263 aa11.93□□□□□ -0.5
RTN3-201ENST00000338850 C19orf81C9J6K1 198 aa11.92□□□□□ -0.5
RTN3-201ENST00000338850 USP17L10C9JJH3 530 aa11.92□□□□□ -0.5
RTN3-201ENST00000338850 USO1O60763 962 aaKnown RBP11.92□□□□□ -0.5
RTN3-201ENST00000338850 GNA14O95837 355 aa11.92□□□□□ -0.5
RTN3-201ENST00000338850 TRIM21P19474 475 aaKnown RBP11.92□□□□□ -0.5
RTN3-201ENST00000338850 TNFRSF8P28908 595 aa11.92□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 12.4 ms