RNA–Protein interactions for RNA: ENST00000324288.12

CIITA-201, Transcript of class II major histocompatibility complex transactivator, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CIITA, Length 11,952 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-201ENST00000324288 TMEM154Q6P9G4 183 aa8.5□□□□□ -1.05
CIITA-201ENST00000324288 SLFN12Q8IYM2 578 aa8.5□□□□□ -1.05
CIITA-201ENST00000324288 PPIL4Q8WUA2 492 aaKnown RBP eCLIP8.5□□□□□ -1.05
CIITA-201ENST00000324288 TCP11X1B4DZS4 312 aa8.5□□□□□ -1.05
CIITA-201ENST00000324288 ECEL1O95672 775 aa8.5□□□□□ -1.05
CIITA-201ENST00000324288 SLC16A2P36021 539 aa8.5□□□□□ -1.05
CIITA-201ENST00000324288 FBXW4P57775 412 aa8.5□□□□□ -1.05
CIITA-201ENST00000324288 GCKRQ14397 625 aa8.5□□□□□ -1.05
CIITA-201ENST00000324288 CDO1Q16878 200 aa8.5□□□□□ -1.05
CIITA-201ENST00000324288 CDKL2Q92772 493 aa8.5□□□□□ -1.05
CIITA-201ENST00000324288 CALR3Q96L12 384 aaKnown RBP8.5□□□□□ -1.05
CIITA-201ENST00000324288 KLC2Q9H0B6 622 aa8.5□□□□□ -1.05
CIITA-201ENST00000324288 COG4Q9H9E3 785 aa8.5□□□□□ -1.05
CIITA-201ENST00000324288 KIF17Q9P2E2 1029 aa8.5□□□□□ -1.05
CIITA-201ENST00000324288 SRGAP2BP0DMP2 458 aa8.5□□□□□ -1.05
CIITA-201ENST00000324288 COPB2P35606 906 aa8.5□□□□□ -1.05
CIITA-201ENST00000324288 TEKT2Q9UIF3 430 aa8.5□□□□□ -1.05
CIITA-201ENST00000324288 SUGT1Q9Y2Z0 365 aa8.5□□□□□ -1.05
CIITA-201ENST00000324288 ATP2B4P23634 1241 aa8.5□□□□□ -1.05
CIITA-201ENST00000324288 CTSWP56202 376 aa8.5□□□□□ -1.05
CIITA-201ENST00000324288 ICA1Q05084 483 aa8.5□□□□□ -1.05
CIITA-201ENST00000324288 FAM180AQ6UWF9 173 aa8.5□□□□□ -1.05
CIITA-201ENST00000324288 PNMA1Q8ND90 353 aa8.5□□□□□ -1.05
CIITA-201ENST00000324288 INPP5DQ92835 1189 aa8.5□□□□□ -1.05
CIITA-201ENST00000324288 SMAD5Q99717 465 aaKnown RBP8.5□□□□□ -1.05
CIITA-201ENST00000324288 PCDHA5Q9Y5H7 936 aa8.5□□□□□ -1.05
CIITA-201ENST00000324288 PCDHA1Q9Y5I3 950 aa8.5□□□□□ -1.05
CIITA-201ENST00000324288 KLRF2D3W0D1 207 aa8.5□□□□□ -1.05
CIITA-201ENST00000324288 N4BP1O75113 896 aaKnown RBP8.5□□□□□ -1.05
CIITA-201ENST00000324288 TMPRSS15P98073 1019 aa8.5□□□□□ -1.05
CIITA-201ENST00000324288 LRRC14Q15048 493 aa8.5□□□□□ -1.05
CIITA-201ENST00000324288 RWDD4Q6NW29 188 aaKnown RBP8.5□□□□□ -1.05
CIITA-201ENST00000324288 FBXL13Q8NEE6 735 aa8.5□□□□□ -1.05
CIITA-201ENST00000324288 UHRF1BP1LA0JNW5 1464 aa8.49□□□□□ -1.05
CIITA-201ENST00000324288 INO80B-WBP1J3KQ70 363 aa8.49□□□□□ -1.05
CIITA-201ENST00000324288 RWDD2BP57060 319 aa8.49□□□□□ -1.05
CIITA-201ENST00000324288 INO80BQ9C086 356 aaPredicted RBP8.49□□□□□ -1.05
CIITA-201ENST00000324288 TYW5A2RUC4 315 aaKnown RBP8.49□□□□□ -1.05
CIITA-201ENST00000324288 NBNO60934 754 aa8.49□□□□□ -1.05
CIITA-201ENST00000324288 DTX3LQ8TDB6 740 aa8.49□□□□□ -1.05
CIITA-201ENST00000324288 TUBB6Q9BUF5 446 aa8.49□□□□□ -1.05
CIITA-201ENST00000324288 GINM1Q9NU53 330 aa8.49□□□□□ -1.05
CIITA-201ENST00000324288 SLC13A4Q9UKG4 626 aa8.49□□□□□ -1.05
CIITA-201ENST00000324288 ZNF18P17022 549 aa8.49□□□□□ -1.05
CIITA-201ENST00000324288 ZC3H12BQ5HYM0 836 aaKnown RBP8.49□□□□□ -1.05
CIITA-201ENST00000324288 CC2D1AQ6P1N0 951 aaPredicted RBP8.49□□□□□ -1.05
CIITA-201ENST00000324288 DPP9Q86TI2 863 aa8.49□□□□□ -1.05
CIITA-201ENST00000324288 LONP2Q86WA8 852 aa8.49□□□□□ -1.05
CIITA-201ENST00000324288 ZNF710Q8N1W2 664 aa8.49□□□□□ -1.05
CIITA-201ENST00000324288 CHURC1Q8WUH1 139 aa8.49□□□□□ -1.05
CIITA-201ENST00000324288 PRDM5Q9NQX1 630 aaPredicted RBP8.49□□□□□ -1.05
CIITA-201ENST00000324288 HDAC6Q9UBN7 1215 aa8.49□□□□□ -1.05
CIITA-201ENST00000324288 SEC24DO94855 1032 aaPredicted RBP8.49□□□□□ -1.05
CIITA-201ENST00000324288 LMNAP02545 664 aaKnown RBP8.49□□□□□ -1.05
CIITA-201ENST00000324288 SPARCL1Q14515 664 aa8.49□□□□□ -1.05
CIITA-201ENST00000324288 KRT33BQ14525 404 aa8.49□□□□□ -1.05
CIITA-201ENST00000324288 FBXO11Q86XK2 927 aa8.49□□□□□ -1.05
CIITA-201ENST00000324288 IP6K1Q92551 441 aa8.49□□□□□ -1.05
CIITA-201ENST00000324288 ASCC2Q9H1I8 757 aaPredicted RBP8.49□□□□□ -1.05
CIITA-201ENST00000324288 M0R2C6 588 aa8.49□□□□□ -1.05
CIITA-201ENST00000324288 MCF2LO15068 1137 aa8.49□□□□□ -1.05
CIITA-201ENST00000324288 NKX1-1Q15270 411 aaPredicted RBP8.49□□□□□ -1.05
CIITA-201ENST00000324288 KRT31Q15323 416 aa8.49□□□□□ -1.05
CIITA-201ENST00000324288 CEP78Q5JTW2 689 aa8.49□□□□□ -1.05
CIITA-201ENST00000324288 TRIM55Q9BYV6 548 aa8.49□□□□□ -1.05
CIITA-201ENST00000324288 ZMYM4Q5VZL5 1548 aa8.49□□□□□ -1.05
CIITA-201ENST00000324288 LINC00854A0A1B0GVQ3 168 aa8.49□□□□□ -1.05
CIITA-201ENST00000324288 SLC9A5Q14940 896 aa8.49□□□□□ -1.05
CIITA-201ENST00000324288 LRRC36Q1X8D7 754 aa8.49□□□□□ -1.05
CIITA-201ENST00000324288 NEK8Q86SG6 692 aa8.49□□□□□ -1.05
CIITA-201ENST00000324288 HOOK2Q96ED9 719 aa8.49□□□□□ -1.05
CIITA-201ENST00000324288 NR1H4Q96RI1 486 aaPredicted RBP8.49□□□□□ -1.05
CIITA-201ENST00000324288 KIF21AQ7Z4S6 1674 aa8.49□□□□□ -1.05
CIITA-201ENST00000324288 TNKSO95271 1327 aa8.49□□□□□ -1.05
CIITA-201ENST00000324288 APBA3O96018 575 aa8.49□□□□□ -1.05
CIITA-201ENST00000324288 BRD2P25440 801 aaKnown RBP8.49□□□□□ -1.05
CIITA-201ENST00000324288 KCTD17Q8N5Z5 321 aa8.49□□□□□ -1.05
CIITA-201ENST00000324288 GADD45GIP1Q8TAE8 222 aaPredicted RBP8.49□□□□□ -1.05
CIITA-201ENST00000324288 SOX5P35711 763 aa8.49□□□□□ -1.05
CIITA-201ENST00000324288 PARP10Q53GL7 1025 aa8.49□□□□□ -1.05
CIITA-201ENST00000324288 ABI1Q8IZP0 508 aa8.49□□□□□ -1.05
CIITA-201ENST00000324288 IL17RAQ96F46 866 aa8.49□□□□□ -1.05
CIITA-201ENST00000324288 SAMSN1Q9NSI8 373 aaKnown RBP8.49□□□□□ -1.05
CIITA-201ENST00000324288 NUGGCQ68CJ6 796 aa8.48□□□□□ -1.05
CIITA-201ENST00000324288 TEKT3Q9BXF9 490 aa8.48□□□□□ -1.05
CIITA-201ENST00000324288 SLC52A2Q9HAB3 445 aa8.48□□□□□ -1.05
CIITA-201ENST00000324288 ATP8A2Q9NTI2 1148 aa8.48□□□□□ -1.05
CIITA-201ENST00000324288 GTSE1Q9NYZ3 720 aa8.48□□□□□ -1.05
CIITA-201ENST00000324288 DBNLQ9UJU6 430 aaKnown RBP8.48□□□□□ -1.05
CIITA-201ENST00000324288 HMGB1P1B2RPK0 211 aaPredicted RBP8.48□□□□□ -1.05
CIITA-201ENST00000324288 PALMO75781 387 aa8.48□□□□□ -1.05
CIITA-201ENST00000324288 SCG2P13521 617 aa8.48□□□□□ -1.05
CIITA-201ENST00000324288 ALDH18A1P54886 795 aaKnown RBP8.48□□□□□ -1.05
CIITA-201ENST00000324288 CCDC15Q0P6D6 951 aa8.48□□□□□ -1.05
CIITA-201ENST00000324288 SLFN13Q68D06 897 aa8.48□□□□□ -1.05
CIITA-201ENST00000324288 ARHGAP26Q9UNA1 814 aa8.48□□□□□ -1.05
CIITA-201ENST00000324288 CAPRIN1Q14444 709 aaKnown RBP8.48□□□□□ -1.05
CIITA-201ENST00000324288 KIAA1841Q6NSI8 718 aa8.48□□□□□ -1.05
CIITA-201ENST00000324288 MOSPD1Q9UJG1 213 aa8.48□□□□□ -1.05
CIITA-201ENST00000324288 MRPL11Q9Y3B7 192 aaKnown RBP8.48□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms