RNA–Protein interactions for RNA: ENST00000319854.7

SHROOM1-201, Transcript of shroom family member 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SHROOM1, Length 3,190 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1-201ENST00000319854 FAM86B2P0C5J1 330 aa17.1■□□□□ 0.33
SHROOM1-201ENST00000319854 CACNA2D4Q7Z3S7 1137 aa17.1■□□□□ 0.33
SHROOM1-201ENST00000319854 AMNQ9BXJ7 453 aa17.1■□□□□ 0.33
SHROOM1-201ENST00000319854 JADE2Q9NQC1 790 aa17.1■□□□□ 0.33
SHROOM1-201ENST00000319854 NDUFAB1O14561 156 aa17.09■□□□□ 0.33
SHROOM1-201ENST00000319854 NOC3LQ8WTT2 800 aaKnown RBP17.09■□□□□ 0.33
SHROOM1-201ENST00000319854 RGL1Q9NZL6 768 aa17.09■□□□□ 0.33
SHROOM1-201ENST00000319854 BMP3P12645 472 aa17.09■□□□□ 0.33
SHROOM1-201ENST00000319854 MATR3P43243 847 aaKnown RBP eCLIP17.09■□□□□ 0.33
SHROOM1-201ENST00000319854 TDRD12Q587J7 1177 aaKnown RBP17.09■□□□□ 0.33
SHROOM1-201ENST00000319854 TMEM179Q6ZVK1 233 aa17.09■□□□□ 0.33
SHROOM1-201ENST00000319854 DNAJC19Q96DA6 116 aa17.09■□□□□ 0.33
SHROOM1-201ENST00000319854 EHD2Q9NZN4 543 aa17.09■□□□□ 0.33
SHROOM1-201ENST00000319854 SCN9AQ15858 1988 aa17.08■□□□□ 0.33
SHROOM1-201ENST00000319854 MYH7BA7E2Y1 1941 aa17.08■□□□□ 0.33
SHROOM1-201ENST00000319854 KIAA1755Q5JYT7 1200 aa17.08■□□□□ 0.33
SHROOM1-201ENST00000319854 SYDE2Q5VT97 1194 aa17.08■□□□□ 0.33
SHROOM1-201ENST00000319854 PIGOQ8TEQ8 1089 aa17.08■□□□□ 0.33
SHROOM1-201ENST00000319854 CABS1Q96KC9 395 aa17.08■□□□□ 0.33
SHROOM1-201ENST00000319854 TSG101Q99816 390 aa17.08■□□□□ 0.33
SHROOM1-201ENST00000319854 IKZF4Q9H2S9 585 aa17.08■□□□□ 0.33
SHROOM1-201ENST00000319854 LRRC53A6NM62 1247 aa17.08■□□□□ 0.32
SHROOM1-201ENST00000319854 ZBTB39O15060 712 aa17.08■□□□□ 0.32
SHROOM1-201ENST00000319854 AKR1B10O60218 316 aa17.08■□□□□ 0.32
SHROOM1-201ENST00000319854 ZEB2O60315 1214 aa17.08■□□□□ 0.32
SHROOM1-201ENST00000319854 CASP5P51878 434 aa17.08■□□□□ 0.32
SHROOM1-201ENST00000319854 NAP1L1P55209 391 aaKnown RBP17.08■□□□□ 0.32
SHROOM1-201ENST00000319854 ZBED6P86452 979 aa17.08■□□□□ 0.32
SHROOM1-201ENST00000319854 TMEM119Q4V9L6 283 aa17.08■□□□□ 0.32
SHROOM1-201ENST00000319854 FAM83BQ5T0W9 1011 aa17.08■□□□□ 0.32
SHROOM1-201ENST00000319854 H0YHG0 523 aa17.08■□□□□ 0.32
SHROOM1-201ENST00000319854 IBSPP21815 317 aaPredicted RBP17.08■□□□□ 0.32
SHROOM1-201ENST00000319854 CATSPER3Q86XQ3 398 aa17.08■□□□□ 0.32
SHROOM1-201ENST00000319854 CREG2Q8IUH2 290 aa17.08■□□□□ 0.32
SHROOM1-201ENST00000319854 GUF1Q8N442 669 aaKnown RBP17.08■□□□□ 0.32
SHROOM1-201ENST00000319854 NYAP2Q9P242 653 aa17.08■□□□□ 0.32
SHROOM1-201ENST00000319854 ATF5Q9Y2D1 282 aaPredicted RBP17.08■□□□□ 0.32
SHROOM1-201ENST00000319854 MYH10P35580 1976 aa17.07■□□□□ 0.32
SHROOM1-201ENST00000319854 MYH4Q9Y623 1939 aa17.07■□□□□ 0.32
SHROOM1-201ENST00000319854 PVALEFA0A1B0GWK0 134 aa17.07■□□□□ 0.32
SHROOM1-201ENST00000319854 RSPH10B2B2RC85 870 aa17.07■□□□□ 0.32
SHROOM1-201ENST00000319854 PLSCR1O15162 318 aa17.07■□□□□ 0.32
SHROOM1-201ENST00000319854 RSPH10BP0C881 870 aa17.07■□□□□ 0.32
SHROOM1-201ENST00000319854 CYLC1P35663 651 aaPredicted RBP17.07■□□□□ 0.32
SHROOM1-201ENST00000319854 PPARDQ03181 441 aa17.07■□□□□ 0.32
SHROOM1-201ENST00000319854 CKAP4Q07065 602 aaKnown RBP17.07■□□□□ 0.32
SHROOM1-201ENST00000319854 OTUD6BQ8N6M0 293 aa17.07■□□□□ 0.32
SHROOM1-201ENST00000319854 TTYH3Q9C0H2 523 aa17.07■□□□□ 0.32
SHROOM1-201ENST00000319854 MLXIPQ9HAP2 919 aa17.07■□□□□ 0.32
SHROOM1-201ENST00000319854 KRT14P02533 472 aa17.07■□□□□ 0.32
SHROOM1-201ENST00000319854 EIF4A3P38919 411 aaKnown RBP17.07■□□□□ 0.32
SHROOM1-201ENST00000319854 SPA17Q15506 151 aa17.07■□□□□ 0.32
SHROOM1-201ENST00000319854 PPP1R18Q6NYC8 613 aa17.07■□□□□ 0.32
SHROOM1-201ENST00000319854 RPGRIP1Q96KN7 1286 aa17.07■□□□□ 0.32
SHROOM1-201ENST00000319854 TMEM39BQ9GZU3 492 aa17.07■□□□□ 0.32
SHROOM1-201ENST00000319854 FBXO28Q9NVF7 368 aa17.07■□□□□ 0.32
SHROOM1-201ENST00000319854 PPP1R1BQ9UD71 204 aaPredicted RBP17.07■□□□□ 0.32
SHROOM1-201ENST00000319854 GOLGA8KD6RF30 607 aa17.06■□□□□ 0.32
SHROOM1-201ENST00000319854 ZNF263O14978 683 aa17.06■□□□□ 0.32
SHROOM1-201ENST00000319854 MEFVO15553 781 aaPredicted RBP17.06■□□□□ 0.32
SHROOM1-201ENST00000319854 CXCR5P32302 372 aa17.06■□□□□ 0.32
SHROOM1-201ENST00000319854 GBP6Q6ZN66 633 aa17.06■□□□□ 0.32
SHROOM1-201ENST00000319854 LARGE2Q8N3Y3 721 aa17.06■□□□□ 0.32
SHROOM1-201ENST00000319854 DCAF4Q8WV16 495 aa17.06■□□□□ 0.32
SHROOM1-201ENST00000319854 ZKSCAN4Q969J2 545 aaPredicted RBP17.06■□□□□ 0.32
SHROOM1-201ENST00000319854 IDI2Q9BXS1 227 aa17.06■□□□□ 0.32
SHROOM1-201ENST00000319854 PRR12Q9ULL5 1215 aa17.06■□□□□ 0.32
SHROOM1-201ENST00000319854 SCP2P22307 547 aa17.06■□□□□ 0.32
SHROOM1-201ENST00000319854 USP8P40818 1118 aa17.06■□□□□ 0.32
SHROOM1-201ENST00000319854 SKOR1P84550 965 aa17.06■□□□□ 0.32
SHROOM1-201ENST00000319854 CTTNQ14247 550 aaKnown RBP17.06■□□□□ 0.32
SHROOM1-201ENST00000319854 MAN2A1Q16706 1144 aa17.06■□□□□ 0.32
SHROOM1-201ENST00000319854 CC2D2BQ6DHV5 1058 aa17.06■□□□□ 0.32
SHROOM1-201ENST00000319854 LRRC55Q6ZSA7 311 aa17.06■□□□□ 0.32
SHROOM1-201ENST00000319854 DNAAF5Q86Y56 855 aa17.06■□□□□ 0.32
SHROOM1-201ENST00000319854 GLIS2Q9BZE0 524 aaPredicted RBP17.06■□□□□ 0.32
SHROOM1-201ENST00000319854 BHMT2Q9H2M3 363 aa17.06■□□□□ 0.32
SHROOM1-201ENST00000319854 ARHGAP20Q9P2F6 1191 aa17.06■□□□□ 0.32
SHROOM1-201ENST00000319854 SLX4Q8IY92 1834 aa17.06■□□□□ 0.32
SHROOM1-201ENST00000319854 DDX39AO00148 427 aaKnown RBP17.05■□□□□ 0.32
SHROOM1-201ENST00000319854 FSBPO95073 299 aa17.05■□□□□ 0.32
SHROOM1-201ENST00000319854 CYP11B2P19099 503 aa17.05■□□□□ 0.32
SHROOM1-201ENST00000319854 EPS15P42566 896 aa17.05■□□□□ 0.32
SHROOM1-201ENST00000319854 GUCY1A3Q02108 690 aa17.05■□□□□ 0.32
SHROOM1-201ENST00000319854 PTPROQ16827 1216 aa17.05■□□□□ 0.32
SHROOM1-201ENST00000319854 CCDC65Q8IXS2 484 aa17.05■□□□□ 0.32
SHROOM1-201ENST00000319854 MTMR8Q96EF0 704 aa17.05■□□□□ 0.32
SHROOM1-201ENST00000319854 TMOD2Q9NZR1 351 aa17.05■□□□□ 0.32
SHROOM1-201ENST00000319854 KRT86O43790 486 aa17.05■□□□□ 0.32
SHROOM1-201ENST00000319854 KRT83P78385 493 aa17.05■□□□□ 0.32
SHROOM1-201ENST00000319854 GFPT1Q06210 699 aaPredicted RBP17.05■□□□□ 0.32
SHROOM1-201ENST00000319854 RNPC3Q96LT9 517 aaKnown RBP17.05■□□□□ 0.32
SHROOM1-201ENST00000319854 IFIH1Q9BYX4 1025 aaKnown RBP17.05■□□□□ 0.32
SHROOM1-201ENST00000319854 EMILIN3Q9NT22 766 aa17.05■□□□□ 0.32
SHROOM1-201ENST00000319854 SERPINA10Q9UK55 444 aa17.05■□□□□ 0.32
SHROOM1-201ENST00000319854 GCFC2P16383 781 aaKnown RBP17.05■□□□□ 0.32
SHROOM1-201ENST00000319854 SEC24CP53992 1094 aa17.05■□□□□ 0.32
SHROOM1-201ENST00000319854 POLR2FP61218 127 aaKnown RBP17.05■□□□□ 0.32
SHROOM1-201ENST00000319854 KIF5AQ12840 1032 aa17.05■□□□□ 0.32
SHROOM1-201ENST00000319854 ARSHQ5FYA8 562 aa17.05■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms