RNA–Protein interactions for RNA: ENST00000307662.4

SYNPO-201, Transcript of synaptopodin, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SYNPO, Length 5,374 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-201ENST00000307662 NUB1Q9Y5A7 615 aa18.69■□□□□ 0.58
SYNPO-201ENST00000307662 SHROOM2Q13796 1616 aa18.68■□□□□ 0.58
SYNPO-201ENST00000307662 SYNGAP1Q96PV0 1343 aa18.68■□□□□ 0.58
SYNPO-201ENST00000307662 BBS9Q3SYG4 887 aa18.68■□□□□ 0.58
SYNPO-201ENST00000307662 ATP10DQ9P241 1426 aa18.68■□□□□ 0.58
SYNPO-201ENST00000307662 ESYT2A0FGR8 921 aa18.68■□□□□ 0.58
SYNPO-201ENST00000307662 CFLARO15519 480 aa18.68■□□□□ 0.58
SYNPO-201ENST00000307662 NR1H3Q13133 447 aa18.68■□□□□ 0.58
SYNPO-201ENST00000307662 CERKLQ49MI3 558 aaPredicted RBP18.68■□□□□ 0.58
SYNPO-201ENST00000307662 DNAJC24Q6P3W2 148 aa18.68■□□□□ 0.58
SYNPO-201ENST00000307662 CRLF3Q8IUI8 442 aa18.68■□□□□ 0.58
SYNPO-201ENST00000307662 DCLK2Q8N568 766 aa18.68■□□□□ 0.58
SYNPO-201ENST00000307662 KCNV2Q8TDN2 545 aa18.68■□□□□ 0.58
SYNPO-201ENST00000307662 THOC1Q96FV9 657 aaKnown RBP18.68■□□□□ 0.58
SYNPO-201ENST00000307662 WDR3Q9UNX4 943 aaKnown RBP eCLIP18.68■□□□□ 0.58
SYNPO-201ENST00000307662 PRR36Q9H6K5 1346 aa18.68■□□□□ 0.58
SYNPO-201ENST00000307662 ICA1Q05084 483 aa18.68■□□□□ 0.58
SYNPO-201ENST00000307662 FAM47EQ6ZV65 393 aa18.68■□□□□ 0.58
SYNPO-201ENST00000307662 MCUQ8NE86 351 aa18.68■□□□□ 0.58
SYNPO-201ENST00000307662 MLXIPQ9HAP2 919 aa18.68■□□□□ 0.58
SYNPO-201ENST00000307662 LRRIQ4A6NIV6 560 aa18.68■□□□□ 0.58
SYNPO-201ENST00000307662 ALAS1P13196 640 aa18.68■□□□□ 0.58
SYNPO-201ENST00000307662 PMS2P54278 862 aa18.68■□□□□ 0.58
SYNPO-201ENST00000307662 CAPRIN2Q6IMN6 1127 aaKnown RBP18.68■□□□□ 0.58
SYNPO-201ENST00000307662 ANKRD7Q92527 254 aa18.68■□□□□ 0.58
SYNPO-201ENST00000307662 EIF2AQ9BY44 585 aaKnown RBP18.68■□□□□ 0.58
SYNPO-201ENST00000307662 ECT2Q9H8V3 914 aa18.68■□□□□ 0.58
SYNPO-201ENST00000307662 ATG3Q9NT62 314 aa18.68■□□□□ 0.58
SYNPO-201ENST00000307662 ZKSCAN7Q9P0L1 754 aaPredicted RBP18.68■□□□□ 0.58
SYNPO-201ENST00000307662 CPSF1Q10570 1443 aaKnown RBP18.68■□□□□ 0.58
SYNPO-201ENST00000307662 MIF4GDA9UHW6 222 aaKnown RBP18.67■□□□□ 0.58
SYNPO-201ENST00000307662 H0YIN7 160 aa18.67■□□□□ 0.58
SYNPO-201ENST00000307662 POLGP54098 1239 aaPredicted RBP18.67■□□□□ 0.58
SYNPO-201ENST00000307662 PDIK1LQ8N165 341 aa18.67■□□□□ 0.58
SYNPO-201ENST00000307662 SUPT20HQ8NEM7 779 aa18.67■□□□□ 0.58
SYNPO-201ENST00000307662 ARMC2Q8NEN0 867 aa18.67■□□□□ 0.58
SYNPO-201ENST00000307662 FAM167BQ9BTA0 163 aa18.67■□□□□ 0.58
SYNPO-201ENST00000307662 KCNF1Q9H3M0 494 aa18.67■□□□□ 0.58
SYNPO-201ENST00000307662 TLK1Q9UKI8 766 aa18.67■□□□□ 0.58
SYNPO-201ENST00000307662 RASA4BC9J798 803 aa18.67■□□□□ 0.58
SYNPO-201ENST00000307662 RASA4O43374 803 aa18.67■□□□□ 0.58
SYNPO-201ENST00000307662 PLA2G4BP0C869 781 aa18.67■□□□□ 0.58
SYNPO-201ENST00000307662 SRGAP2BP0DMP2 458 aa18.67■□□□□ 0.58
SYNPO-201ENST00000307662 KPNA2P52292 529 aaKnown RBP18.67■□□□□ 0.58
SYNPO-201ENST00000307662 DRP2Q13474 957 aa18.67■□□□□ 0.58
SYNPO-201ENST00000307662 METTL13Q8N6R0 699 aa18.67■□□□□ 0.58
SYNPO-201ENST00000307662 CHMP6Q96FZ7 201 aa18.67■□□□□ 0.58
SYNPO-201ENST00000307662 CFAP36Q96G28 342 aa18.67■□□□□ 0.58
SYNPO-201ENST00000307662 GINM1Q9NU53 330 aa18.67■□□□□ 0.58
SYNPO-201ENST00000307662 MID2Q9UJV3 735 aa18.67■□□□□ 0.58
SYNPO-201ENST00000307662 MDM2Q00987 491 aaPredicted RBP18.67■□□□□ 0.58
SYNPO-201ENST00000307662 RNF207Q6ZRF8 634 aa18.67■□□□□ 0.58
SYNPO-201ENST00000307662 PCIF1Q9H4Z3 704 aa18.67■□□□□ 0.58
SYNPO-201ENST00000307662 PPARGC1AQ9UBK2 798 aaKnown RBP18.67■□□□□ 0.58
SYNPO-201ENST00000307662 EPM2AIP1Q7L775 607 aaPredicted RBP18.66■□□□□ 0.58
SYNPO-201ENST00000307662 PCGF5Q86SE9 256 aa18.66■□□□□ 0.58
SYNPO-201ENST00000307662 HOOK2Q96ED9 719 aa18.66■□□□□ 0.58
SYNPO-201ENST00000307662 GPHNQ9NQX3 736 aaPredicted RBP18.66■□□□□ 0.58
SYNPO-201ENST00000307662 ALDH1B1P30837 517 aa18.66■□□□□ 0.58
SYNPO-201ENST00000307662 NFRKBQ6P4R8 1299 aa18.66■□□□□ 0.58
SYNPO-201ENST00000307662 LRRC53A6NM62 1247 aa18.66■□□□□ 0.58
SYNPO-201ENST00000307662 ZMAT2Q96NC0 199 aaKnown RBP18.66■□□□□ 0.58
SYNPO-201ENST00000307662 TAF1DQ9H5J8 278 aaPredicted RBP18.66■□□□□ 0.58
SYNPO-201ENST00000307662 SAYSD1Q9NPB0 183 aa18.66■□□□□ 0.58
SYNPO-201ENST00000307662 HDAC6Q9UBN7 1215 aa18.66■□□□□ 0.58
SYNPO-201ENST00000307662 SASH1O94885 1247 aa18.66■□□□□ 0.58
SYNPO-201ENST00000307662 CDC37Q16543 378 aaPredicted RBP18.66■□□□□ 0.58
SYNPO-201ENST00000307662 LCORLQ8N3X6 602 aa18.66■□□□□ 0.58
SYNPO-201ENST00000307662 RUBCNQ92622 972 aa18.66■□□□□ 0.58
SYNPO-201ENST00000307662 NACC1Q96RE7 527 aa18.66■□□□□ 0.58
SYNPO-201ENST00000307662 PIGSQ96S52 555 aa18.66■□□□□ 0.58
SYNPO-201ENST00000307662 UPF3AQ9H1J1 476 aaKnown RBP18.66■□□□□ 0.58
SYNPO-201ENST00000307662 GOLGA8SH3BPF8 625 aa18.65■□□□□ 0.58
SYNPO-201ENST00000307662 PRKAB2O43741 272 aa18.65■□□□□ 0.58
SYNPO-201ENST00000307662 MXI1P50539 228 aa18.65■□□□□ 0.58
SYNPO-201ENST00000307662 KCTD6Q8NC69 237 aa18.65■□□□□ 0.58
SYNPO-201ENST00000307662 DEPDC1BQ8WUY9 529 aa18.65■□□□□ 0.58
SYNPO-201ENST00000307662 LRRC37BQ96QE4 947 aa18.65■□□□□ 0.58
SYNPO-201ENST00000307662 ATP2B4P23634 1241 aa18.65■□□□□ 0.58
SYNPO-201ENST00000307662 ARHGAP18Q8N392 663 aa18.65■□□□□ 0.58
SYNPO-201ENST00000307662 ADPGKQ9BRR6 497 aa18.65■□□□□ 0.58
SYNPO-201ENST00000307662 OSBPL1AQ9BXW6 950 aa18.65■□□□□ 0.58
SYNPO-201ENST00000307662 ZNF577Q9BSK1 485 aa18.65■□□□□ 0.58
SYNPO-201ENST00000307662 TRIM49BA6NDI0 452 aa18.65■□□□□ 0.58
SYNPO-201ENST00000307662 CTIFO43310 598 aaKnown RBP18.65■□□□□ 0.58
SYNPO-201ENST00000307662 IL6STP40189 918 aaPredicted RBP18.65■□□□□ 0.58
SYNPO-201ENST00000307662 VSNL1P62760 191 aa18.65■□□□□ 0.58
SYNPO-201ENST00000307662 CAV1Q03135 178 aa18.65■□□□□ 0.58
SYNPO-201ENST00000307662 PTPN12Q05209 780 aaKnown RBP18.65■□□□□ 0.58
SYNPO-201ENST00000307662 GFPT1Q06210 699 aaPredicted RBP18.65■□□□□ 0.58
SYNPO-201ENST00000307662 PLCB4Q15147 1175 aa18.65■□□□□ 0.58
SYNPO-201ENST00000307662 HACE1Q8IYU2 909 aa18.65■□□□□ 0.58
SYNPO-201ENST00000307662 HIPK4Q8NE63 616 aa18.65■□□□□ 0.58
SYNPO-201ENST00000307662 TTC17Q96AE7 1141 aa18.65■□□□□ 0.58
SYNPO-201ENST00000307662 STK32BQ9NY57 414 aa18.65■□□□□ 0.58
SYNPO-201ENST00000307662 ESYT3A0FGR9 886 aa18.64■□□□□ 0.58
SYNPO-201ENST00000307662 GOLGA8CPA6NN73 597 aa18.64■□□□□ 0.58
SYNPO-201ENST00000307662 MEIS1O00470 390 aa18.64■□□□□ 0.58
SYNPO-201ENST00000307662 MEFVO15553 781 aaPredicted RBP18.64■□□□□ 0.58
SYNPO-201ENST00000307662 ECM2O94769 699 aaPredicted RBP18.64■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms