RNA–Protein interactions for RNA: ENST00000306177.9

USP42-201, Transcript of ubiquitin specific peptidase 42, humanhuman

APPRIS P1 TSL 5 BASIC

Gene USP42, Length 5,155 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP42-201ENST00000306177 EEPD1Q7L9B9 569 aa17.25■□□□□ 0.35
USP42-201ENST00000306177 RPUSD2Q8IZ73 545 aaKnown RBP17.25■□□□□ 0.35
USP42-201ENST00000306177 RNF10Q8N5U6 811 aaKnown RBP17.25■□□□□ 0.35
USP42-201ENST00000306177 NUF2Q9BZD4 464 aa17.25■□□□□ 0.35
USP42-201ENST00000306177 KRT1P04264 644 aa17.25■□□□□ 0.35
USP42-201ENST00000306177 INHBAP08476 426 aa17.25■□□□□ 0.35
USP42-201ENST00000306177 C2orf54Q08AI8 447 aa17.25■□□□□ 0.35
USP42-201ENST00000306177 ORC2Q13416 577 aaPredicted RBP17.25■□□□□ 0.35
USP42-201ENST00000306177 ZBTB33Q86T24 672 aa17.25■□□□□ 0.35
USP42-201ENST00000306177 LRRC8CQ8TDW0 803 aa17.25■□□□□ 0.35
USP42-201ENST00000306177 NXF1Q9UBU9 619 aaKnown RBP17.25■□□□□ 0.35
USP42-201ENST00000306177 GPSM2P81274 684 aa17.24■□□□□ 0.35
USP42-201ENST00000306177 SLFN12LQ6IEE8 588 aa17.24■□□□□ 0.35
USP42-201ENST00000306177 METTL23Q86XA0 190 aa17.24■□□□□ 0.35
USP42-201ENST00000306177 CEP95Q96GE4 821 aa17.24■□□□□ 0.35
USP42-201ENST00000306177 SCYL1Q96KG9 808 aa17.24■□□□□ 0.35
USP42-201ENST00000306177 CCDC68Q9H2F9 335 aa17.24■□□□□ 0.35
USP42-201ENST00000306177 STK38LQ9Y2H1 464 aa17.24■□□□□ 0.35
USP42-201ENST00000306177 POC1B-GALNT4F8VUJ3 575 aa17.24■□□□□ 0.35
USP42-201ENST00000306177 CXCR5P32302 372 aa17.24■□□□□ 0.35
USP42-201ENST00000306177 KCTD16Q68DU8 428 aa17.24■□□□□ 0.35
USP42-201ENST00000306177 ABI1Q8IZP0 508 aa17.24■□□□□ 0.35
USP42-201ENST00000306177 IPO11Q9UI26 975 aaKnown RBP17.24■□□□□ 0.35
USP42-201ENST00000306177 ADAMTS13Q76LX8 1427 aa17.24■□□□□ 0.35
USP42-201ENST00000306177 SEC31AO94979 1220 aaKnown RBP17.24■□□□□ 0.35
USP42-201ENST00000306177 PLTPP55058 493 aa17.24■□□□□ 0.35
USP42-201ENST00000306177 CYP27A1Q02318 531 aa17.24■□□□□ 0.35
USP42-201ENST00000306177 MYO1EQ12965 1108 aa17.24■□□□□ 0.35
USP42-201ENST00000306177 FAM196BA6NMK8 535 aa17.24■□□□□ 0.35
USP42-201ENST00000306177 MCF2LO15068 1137 aa17.24■□□□□ 0.35
USP42-201ENST00000306177 ZWINTO95229 277 aa17.24■□□□□ 0.35
USP42-201ENST00000306177 CDC27P30260 824 aa17.24■□□□□ 0.35
USP42-201ENST00000306177 POTEMA6NI47 508 aa17.23■□□□□ 0.35
USP42-201ENST00000306177 K7ERI5 159 aa17.23■□□□□ 0.35
USP42-201ENST00000306177 TXNRD1Q16881 649 aa17.23■□□□□ 0.35
USP42-201ENST00000306177 FAM83BQ5T0W9 1011 aa17.23■□□□□ 0.35
USP42-201ENST00000306177 MAP3K21Q5TCX8 1036 aa17.23■□□□□ 0.35
USP42-201ENST00000306177 OXER1Q8TDS5 423 aa17.23■□□□□ 0.35
USP42-201ENST00000306177 ZNF233A6NK53 670 aa17.23■□□□□ 0.35
USP42-201ENST00000306177 SNX1Q13596 522 aa17.23■□□□□ 0.35
USP42-201ENST00000306177 MXD3Q9BW11 206 aa17.23■□□□□ 0.35
USP42-201ENST00000306177 INTS9Q9NV88 658 aaKnown RBP17.23■□□□□ 0.35
USP42-201ENST00000306177 FEM1BQ9UK73 627 aa17.23■□□□□ 0.35
USP42-201ENST00000306177 ZMYND10O75800 440 aa17.23■□□□□ 0.35
USP42-201ENST00000306177 BPIFA3Q9BQP9 254 aa17.23■□□□□ 0.35
USP42-201ENST00000306177 MSTO1Q9BUK6 570 aa17.23■□□□□ 0.35
USP42-201ENST00000306177 CAPN7Q9Y6W3 813 aa17.23■□□□□ 0.35
USP42-201ENST00000306177 PEX3P56589 373 aa17.23■□□□□ 0.35
USP42-201ENST00000306177 IL9RQ01113 521 aa17.23■□□□□ 0.35
USP42-201ENST00000306177 RCSD1Q6JBY9 416 aa17.23■□□□□ 0.35
USP42-201ENST00000306177 RSRC2Q7L4I2 434 aaKnown RBP17.23■□□□□ 0.35
USP42-201ENST00000306177 FMR1NBQ8N0W7 255 aaPredicted RBP17.23■□□□□ 0.35
USP42-201ENST00000306177 PROM2Q8N271 834 aa17.23■□□□□ 0.35
USP42-201ENST00000306177 CCHCR1Q8TD31 782 aa17.23■□□□□ 0.35
USP42-201ENST00000306177 PNPLA7Q6ZV29 1317 aa17.23■□□□□ 0.35
USP42-201ENST00000306177 CCDC151A5D8V7 595 aa17.22■□□□□ 0.35
USP42-201ENST00000306177 PRELPP51888 382 aa17.22■□□□□ 0.35
USP42-201ENST00000306177 NXNQ6DKJ4 435 aa17.22■□□□□ 0.35
USP42-201ENST00000306177 ALKBH5Q6P6C2 394 aaKnown RBP17.22■□□□□ 0.35
USP42-201ENST00000306177 GOLPH3LQ9H4A5 285 aa17.22■□□□□ 0.35
USP42-201ENST00000306177 CCDC38Q502W7 563 aa17.22■□□□□ 0.35
USP42-201ENST00000306177 RAD54LQ92698 747 aa17.22■□□□□ 0.35
USP42-201ENST00000306177 FAM20AQ96MK3 541 aa17.22■□□□□ 0.35
USP42-201ENST00000306177 SLC38A10Q9HBR0 1119 aa17.22■□□□□ 0.35
USP42-201ENST00000306177 ANAPC5Q9UJX4 755 aa17.22■□□□□ 0.35
USP42-201ENST00000306177 PVALEFA0A1B0GWK0 134 aa17.22■□□□□ 0.35
USP42-201ENST00000306177 GOLGA8IPA6NC78 632 aa17.22■□□□□ 0.35
USP42-201ENST00000306177 GOLGA8JA6NMD2 632 aa17.22■□□□□ 0.35
USP42-201ENST00000306177 SRGAP2BP0DMP2 458 aa17.22■□□□□ 0.35
USP42-201ENST00000306177 ARHGAP4P98171 946 aa17.22■□□□□ 0.35
USP42-201ENST00000306177 MTMR1Q13613 665 aa17.22■□□□□ 0.35
USP42-201ENST00000306177 RC3H1Q5TC82 1133 aaKnown RBP17.22■□□□□ 0.35
USP42-201ENST00000306177 PIGOQ8TEQ8 1089 aa17.22■□□□□ 0.35
USP42-201ENST00000306177 ATP8A1Q9Y2Q0 1164 aa17.22■□□□□ 0.35
USP42-201ENST00000306177 UBN2Q6ZU65 1347 aa17.22■□□□□ 0.35
USP42-201ENST00000306177 ARHGAP42A6NI28 874 aa17.22■□□□□ 0.35
USP42-201ENST00000306177 LDHAP00338 332 aaKnown RBP17.22■□□□□ 0.35
USP42-201ENST00000306177 OSTNP61366 133 aa17.22■□□□□ 0.35
USP42-201ENST00000306177 PDE1BQ01064 536 aa17.22■□□□□ 0.35
USP42-201ENST00000306177 TSGA10IPQ3SY00 556 aa17.22■□□□□ 0.35
USP42-201ENST00000306177 SGMS1Q86VZ5 419 aa17.22■□□□□ 0.35
USP42-201ENST00000306177 RPF1Q9H9Y2 349 aaKnown RBP17.22■□□□□ 0.35
USP42-201ENST00000306177 USP42Q9H9J4 1324 aaKnown RBP17.22■□□□□ 0.35
USP42-201ENST00000306177 PIK3C2BO00750 1634 aa17.21■□□□□ 0.35
USP42-201ENST00000306177 CASQ2O14958 399 aaPredicted RBP17.21■□□□□ 0.35
USP42-201ENST00000306177 ZSCAN20P17040 1043 aaPredicted RBP17.21■□□□□ 0.35
USP42-201ENST00000306177 CD58P19256 250 aa17.21■□□□□ 0.35
USP42-201ENST00000306177 AGLP35573 1532 aa17.21■□□□□ 0.35
USP42-201ENST00000306177 ARL4AP40617 200 aa17.21■□□□□ 0.35
USP42-201ENST00000306177 ARHGEF6Q15052 776 aa17.21■□□□□ 0.35
USP42-201ENST00000306177 BBS5Q8N3I7 341 aa17.21■□□□□ 0.35
USP42-201ENST00000306177 SPDYE16A6NNV3 312 aaPredicted RBP17.21■□□□□ 0.35
USP42-201ENST00000306177 SFI1A8K8P3 1242 aa17.21■□□□□ 0.35
USP42-201ENST00000306177 LGALS16A8MUM7 142 aa17.21■□□□□ 0.35
USP42-201ENST00000306177 SAT1P21673 171 aa17.21■□□□□ 0.35
USP42-201ENST00000306177 CLNS1AP54105 237 aaKnown RBP17.21■□□□□ 0.35
USP42-201ENST00000306177 Q3C1V9 767 aa17.21■□□□□ 0.35
USP42-201ENST00000306177 SPDYE2Q495Y8 402 aa17.21■□□□□ 0.35
USP42-201ENST00000306177 BARHL2Q9NY43 387 aa17.21■□□□□ 0.35
USP42-201ENST00000306177 ADAMTS1Q9UHI8 967 aa17.21■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 81.8 ms