RNA–Protein interactions for RNA: ENST00000268049.11

USP3-201, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5 BASIC

Gene USP3, Length 5,311 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-201ENST00000268049 CCDC92Q53HC0 331 aaPredicted RBP8.49□□□□□ -1.05
USP3-201ENST00000268049 FAM117BQ6P1L5 589 aa8.49□□□□□ -1.05
USP3-201ENST00000268049 C4orf50Q6ZRC1 276 aa8.49□□□□□ -1.05
USP3-201ENST00000268049 SHCBP1Q8NEM2 672 aa8.49□□□□□ -1.05
USP3-201ENST00000268049 CSGALNACT1Q8TDX6 532 aa8.49□□□□□ -1.05
USP3-201ENST00000268049 RPAP3Q9H6T3 665 aaPredicted RBP8.49□□□□□ -1.05
USP3-201ENST00000268049 PCDHB9Q9Y5E1 797 aa8.49□□□□□ -1.05
USP3-201ENST00000268049 CSF1RP07333 972 aa8.49□□□□□ -1.05
USP3-201ENST00000268049 ALDH7A1P49419 539 aaKnown RBP8.49□□□□□ -1.05
USP3-201ENST00000268049 ATN1P54259 1190 aaPredicted RBP8.49□□□□□ -1.05
USP3-201ENST00000268049 PAK2Q13177 524 aa8.49□□□□□ -1.05
USP3-201ENST00000268049 BRD3Q15059 726 aa8.49□□□□□ -1.05
USP3-201ENST00000268049 SLC45A4Q5BKX6 768 aa8.49□□□□□ -1.05
USP3-201ENST00000268049 RCSD1Q6JBY9 416 aa8.49□□□□□ -1.05
USP3-201ENST00000268049 GSTA5Q7RTV2 222 aa8.49□□□□□ -1.05
USP3-201ENST00000268049 AFAP1L2Q8N4X5 818 aa8.49□□□□□ -1.05
USP3-201ENST00000268049 GPR161Q8N6U8 529 aaKnown RBP8.49□□□□□ -1.05
USP3-201ENST00000268049 BEST2Q8NFU1 509 aa8.49□□□□□ -1.05
USP3-201ENST00000268049 ACSF2Q96CM8 615 aaPredicted RBP8.49□□□□□ -1.05
USP3-201ENST00000268049 MROH8Q9H579 483 aa8.49□□□□□ -1.05
USP3-201ENST00000268049 ZNF70Q9UC06 446 aaPredicted RBP8.49□□□□□ -1.05
USP3-201ENST00000268049 UBN2Q6ZU65 1347 aa8.49□□□□□ -1.05
USP3-201ENST00000268049 H7C4K7 107 aa8.49□□□□□ -1.05
USP3-201ENST00000268049 PRRG1O14668 218 aa8.49□□□□□ -1.05
USP3-201ENST00000268049 GNGT1P63211 74 aa8.49□□□□□ -1.05
USP3-201ENST00000268049 PLD1Q13393 1074 aa8.49□□□□□ -1.05
USP3-201ENST00000268049 PPP1R7Q15435 360 aa8.49□□□□□ -1.05
USP3-201ENST00000268049 MAP7D1Q3KQU3 841 aa8.49□□□□□ -1.05
USP3-201ENST00000268049 PNMA1Q8ND90 353 aa8.49□□□□□ -1.05
USP3-201ENST00000268049 ZSCAN10Q96SZ4 725 aaPredicted RBP8.49□□□□□ -1.05
USP3-201ENST00000268049 IFNKQ9P0W0 207 aa8.49□□□□□ -1.05
USP3-201ENST00000268049 PCDHB8Q9UN66 801 aa8.49□□□□□ -1.05
USP3-201ENST00000268049 RPAP1Q9BWH6 1393 aaPredicted RBP8.49□□□□□ -1.05
USP3-201ENST00000268049 FARP2O94887 1054 aaPredicted RBP8.49□□□□□ -1.05
USP3-201ENST00000268049 MCAMP43121 646 aa8.49□□□□□ -1.05
USP3-201ENST00000268049 RASSF7Q02833 373 aa8.49□□□□□ -1.05
USP3-201ENST00000268049 DCAF17Q5H9S7 520 aaPredicted RBP8.49□□□□□ -1.05
USP3-201ENST00000268049 PHLDB3Q6NSJ2 640 aa8.49□□□□□ -1.05
USP3-201ENST00000268049 MMS22LQ6ZRQ5 1243 aa8.49□□□□□ -1.05
USP3-201ENST00000268049 BRAPQ7Z569 592 aa8.49□□□□□ -1.05
USP3-201ENST00000268049 RASEFQ8IZ41 740 aa8.49□□□□□ -1.05
USP3-201ENST00000268049 PPIL4Q8WUA2 492 aaKnown RBP eCLIP8.49□□□□□ -1.05
USP3-201ENST00000268049 JAKMIP2Q96AA8 810 aa8.49□□□□□ -1.05
USP3-201ENST00000268049 SYT17Q9BSW7 474 aa8.49□□□□□ -1.05
USP3-201ENST00000268049 MRPL44Q9H9J2 332 aaKnown RBP8.49□□□□□ -1.05
USP3-201ENST00000268049 LRRC4Q9HBW1 653 aa8.49□□□□□ -1.05
USP3-201ENST00000268049 A0A0D9SFI3 127 aa8.48□□□□□ -1.05
USP3-201ENST00000268049 CREB3O43889 395 aa8.48□□□□□ -1.05
USP3-201ENST00000268049 TADA2AO75478 443 aa8.48□□□□□ -1.05
USP3-201ENST00000268049 BCRP11274 1271 aa8.48□□□□□ -1.05
USP3-201ENST00000268049 ATP5DP30049 168 aa8.48□□□□□ -1.05
USP3-201ENST00000268049 KRT9P35527 623 aa8.48□□□□□ -1.05
USP3-201ENST00000268049 PDE6CP51160 858 aa8.48□□□□□ -1.05
USP3-201ENST00000268049 ITKQ08881 620 aa8.48□□□□□ -1.05
USP3-201ENST00000268049 RABL6Q3YEC7 729 aaPredicted RBP8.48□□□□□ -1.05
USP3-201ENST00000268049 RILPL1Q5EBL4 403 aa8.48□□□□□ -1.05
USP3-201ENST00000268049 GKAP1Q5VSY0 366 aaPredicted RBP8.48□□□□□ -1.05
USP3-201ENST00000268049 PPP1R2P3Q6NXS1 205 aa8.48□□□□□ -1.05
USP3-201ENST00000268049 DCUN1D2Q6PH85 259 aa8.48□□□□□ -1.05
USP3-201ENST00000268049 SUGP1Q8IWZ8 645 aaKnown RBP8.48□□□□□ -1.05
USP3-201ENST00000268049 MYOCDQ8IZQ8 938 aa8.48□□□□□ -1.05
USP3-201ENST00000268049 BCAS4Q8TDM0 211 aa8.48□□□□□ -1.05
USP3-201ENST00000268049 SAAL1Q96ER3 474 aa8.48□□□□□ -1.05
USP3-201ENST00000268049 NAPGQ99747 312 aaPredicted RBP8.48□□□□□ -1.05
USP3-201ENST00000268049 MMTAG2Q9BU76 263 aaKnown RBP8.48□□□□□ -1.05
USP3-201ENST00000268049 TEX13BQ9BXU2 312 aa8.48□□□□□ -1.05
USP3-201ENST00000268049 DEFB129Q9H1M3 183 aa8.48□□□□□ -1.05
USP3-201ENST00000268049 EIF2AK3Q9NZJ5 1116 aaKnown RBP8.48□□□□□ -1.05
USP3-201ENST00000268049 KLRF2D3W0D1 207 aa8.48□□□□□ -1.05
USP3-201ENST00000268049 ADCY3O60266 1144 aa8.48□□□□□ -1.05
USP3-201ENST00000268049 DDNO94850 711 aaPredicted RBP8.48□□□□□ -1.05
USP3-201ENST00000268049 RALAP11233 206 aa8.48□□□□□ -1.05
USP3-201ENST00000268049 GCFC2P16383 781 aaKnown RBP8.48□□□□□ -1.05
USP3-201ENST00000268049 CA4P22748 312 aa8.48□□□□□ -1.05
USP3-201ENST00000268049 SCYL3Q8IZE3 742 aa8.48□□□□□ -1.05
USP3-201ENST00000268049 RAB42Q8N4Z0 105 aa8.48□□□□□ -1.05
USP3-201ENST00000268049 FAM151AQ8WW52 585 aa8.48□□□□□ -1.05
USP3-201ENST00000268049 CCDC68Q9H2F9 335 aa8.48□□□□□ -1.05
USP3-201ENST00000268049 PIH1D3Q9NQM4 214 aaKnown RBP8.48□□□□□ -1.05
USP3-201ENST00000268049 MTRF1LQ9UGC7 380 aaKnown RBP8.48□□□□□ -1.05
USP3-201ENST00000268049 COL14A1Q05707 1796 aaKnown RBP8.48□□□□□ -1.05
USP3-201ENST00000268049 NALCNQ8IZF0 1738 aa8.48□□□□□ -1.05
USP3-201ENST00000268049 CXCL11O14625 94 aa8.48□□□□□ -1.05
USP3-201ENST00000268049 F13A1P00488 732 aa8.48□□□□□ -1.05
USP3-201ENST00000268049 FGAP02671 866 aa8.48□□□□□ -1.05
USP3-201ENST00000268049 URODP06132 367 aa8.48□□□□□ -1.05
USP3-201ENST00000268049 PPIGQ13427 754 aaKnown RBP eCLIP8.48□□□□□ -1.052e-6■■■□□ 16.3
USP3-201ENST00000268049 DGKDQ16760 1214 aa8.48□□□□□ -1.05
USP3-201ENST00000268049 ZMYM1Q5SVZ6 1142 aa8.48□□□□□ -1.05
USP3-201ENST00000268049 HS6ST3Q8IZP7 471 aa8.48□□□□□ -1.05
USP3-201ENST00000268049 SIX6OS1Q8N1H7 587 aa8.48□□□□□ -1.05
USP3-201ENST00000268049 CHAMP1Q96JM3 812 aa8.48□□□□□ -1.05
USP3-201ENST00000268049 CEP170P1Q96L14 293 aa8.48□□□□□ -1.05
USP3-201ENST00000268049 BAG1Q99933 345 aaPredicted RBP8.48□□□□□ -1.05
USP3-201ENST00000268049 MAP10Q9P2G4 905 aa8.48□□□□□ -1.05
USP3-201ENST00000268049 STAP2Q9UGK3 403 aa8.48□□□□□ -1.05
USP3-201ENST00000268049 STK38LQ9Y2H1 464 aa8.48□□□□□ -1.05
USP3-201ENST00000268049 RWDD3Q9Y3V2 267 aa8.48□□□□□ -1.05
USP3-201ENST00000268049 PNPLA7Q6ZV29 1317 aa8.48□□□□□ -1.05
USP3-201ENST00000268049 K7ENM7 598 aa8.48□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms