RNA–Protein interactions for RNA: ENST00000263274.11

LIG1-201, Transcript of DNA ligase 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIG1, Length 3,384 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-201ENST00000263274 HAS1Q92839 578 aa13.86□□□□□ -0.19
LIG1-201ENST00000263274 RNPC3Q96LT9 517 aaKnown RBP13.86□□□□□ -0.19
LIG1-201ENST00000263274 NT5C3AQ9H0P0 336 aa13.86□□□□□ -0.19
LIG1-201ENST00000263274 RIOX1Q9H6W3 641 aa13.86□□□□□ -0.19
LIG1-201ENST00000263274 PLAAQ9Y263 795 aa13.86□□□□□ -0.19
LIG1-201ENST00000263274 DAGLAQ9Y4D2 1042 aa13.86□□□□□ -0.19
LIG1-201ENST00000263274 SSU72P8A0A1W2PR75 194 aa13.85□□□□□ -0.19
LIG1-201ENST00000263274 SLC18A3Q16572 532 aa13.85□□□□□ -0.19
LIG1-201ENST00000263274 ALS2CLQ60I27 953 aa13.85□□□□□ -0.19
LIG1-201ENST00000263274 ALKBH5Q6P6C2 394 aaKnown RBP13.85□□□□□ -0.19
LIG1-201ENST00000263274 DNAJC19Q96DA6 116 aa13.85□□□□□ -0.19
LIG1-201ENST00000263274 TSKSQ9UJT2 592 aa13.85□□□□□ -0.19
LIG1-201ENST00000263274 TNKS1BP1Q9C0C2 1729 aaKnown RBP13.85□□□□□ -0.19
LIG1-201ENST00000263274 A0A087WUV0 522 aaPredicted RBP13.85□□□□□ -0.19
LIG1-201ENST00000263274 RPS6KA5O75582 802 aa13.85□□□□□ -0.19
LIG1-201ENST00000263274 XRCC5P13010 732 aaKnown RBP13.85□□□□□ -0.19
LIG1-201ENST00000263274 HNRNPH3P31942 346 aaKnown RBP13.85□□□□□ -0.19
LIG1-201ENST00000263274 PSMC6P62333 389 aa13.85□□□□□ -0.19
LIG1-201ENST00000263274 MAEAQ7L5Y9 396 aa13.85□□□□□ -0.19
LIG1-201ENST00000263274 DAAM2Q86T65 1068 aa13.85□□□□□ -0.19
LIG1-201ENST00000263274 SFR1Q86XK3 245 aa13.85□□□□□ -0.19
LIG1-201ENST00000263274 EFCAB13Q8IY85 973 aa13.85□□□□□ -0.19
LIG1-201ENST00000263274 RNF10Q8N5U6 811 aaKnown RBP13.85□□□□□ -0.19
LIG1-201ENST00000263274 BCAS3Q9H6U6 928 aa13.85□□□□□ -0.19
LIG1-201ENST00000263274 LRP5O75197 1615 aa13.85□□□□□ -0.19
LIG1-201ENST00000263274 TLDC2A0PJX2 215 aa13.85□□□□□ -0.19
LIG1-201ENST00000263274 KRIT1O00522 736 aa13.85□□□□□ -0.19
LIG1-201ENST00000263274 GFPT2O94808 682 aa13.85□□□□□ -0.19
LIG1-201ENST00000263274 NOL4O94818 638 aa13.85□□□□□ -0.19
LIG1-201ENST00000263274 NR1D1P20393 614 aa13.85□□□□□ -0.19
LIG1-201ENST00000263274 HOXA13P31271 388 aaPredicted RBP13.85□□□□□ -0.19
LIG1-201ENST00000263274 CASP5P51878 434 aa13.85□□□□□ -0.19
LIG1-201ENST00000263274 RHBDL3P58872 404 aa13.85□□□□□ -0.19
LIG1-201ENST00000263274 IFFO1Q0D2I5 559 aa13.85□□□□□ -0.19
LIG1-201ENST00000263274 LLGL1Q15334 1064 aa13.85□□□□□ -0.19
LIG1-201ENST00000263274 SCFD1Q8WVM8 642 aa13.85□□□□□ -0.19
LIG1-201ENST00000263274 DNM3Q9UQ16 869 aa13.85□□□□□ -0.19
LIG1-201ENST00000263274 SPATA31A5Q5VU36 1347 aa13.84□□□□□ -0.19
LIG1-201ENST00000263274 SPATA31A7Q8IWB4 1347 aa13.84□□□□□ -0.19
LIG1-201ENST00000263274 PPP1R11O60927 126 aaPredicted RBP13.84□□□□□ -0.19
LIG1-201ENST00000263274 TBCAO75347 108 aaKnown RBP13.84□□□□□ -0.19
LIG1-201ENST00000263274 PRLRP16471 622 aa13.84□□□□□ -0.19
LIG1-201ENST00000263274 CTNNA1P35221 906 aaKnown RBP13.84□□□□□ -0.19
LIG1-201ENST00000263274 MMP14P50281 582 aa13.84□□□□□ -0.19
LIG1-201ENST00000263274 ZNF543Q08ER8 600 aa13.84□□□□□ -0.19
LIG1-201ENST00000263274 SEMA3FQ13275 785 aa13.84□□□□□ -0.19
LIG1-201ENST00000263274 NAB2Q15742 525 aa13.84□□□□□ -0.19
LIG1-201ENST00000263274 SHROOM1Q2M3G4 852 aaPredicted RBP13.84□□□□□ -0.19
LIG1-201ENST00000263274 VPS36Q86VN1 386 aa13.84□□□□□ -0.19
LIG1-201ENST00000263274 ZC3H12CQ9C0D7 883 aaKnown RBP13.84□□□□□ -0.19
LIG1-201ENST00000263274 NUCKS1Q9H1E3 243 aaKnown RBP13.84□□□□□ -0.19
LIG1-201ENST00000263274 IKZF4Q9H2S9 585 aa13.84□□□□□ -0.19
LIG1-201ENST00000263274 COL16A1Q07092 1604 aaPredicted RBP13.84□□□□□ -0.19
LIG1-201ENST00000263274 RSPH10B2B2RC85 870 aa13.84□□□□□ -0.19
LIG1-201ENST00000263274 MED24O75448 989 aa13.84□□□□□ -0.19
LIG1-201ENST00000263274 HLA-DOAP06340 250 aa13.84□□□□□ -0.19
LIG1-201ENST00000263274 RSPH10BP0C881 870 aa13.84□□□□□ -0.19
LIG1-201ENST00000263274 USP8P40818 1118 aa13.84□□□□□ -0.19
LIG1-201ENST00000263274 UBXN2AP68543 259 aa13.84□□□□□ -0.19
LIG1-201ENST00000263274 ARHGAP44Q17R89 818 aa13.84□□□□□ -0.19
LIG1-201ENST00000263274 PROM2Q8N271 834 aa13.84□□□□□ -0.19
LIG1-201ENST00000263274 PIGOQ8TEQ8 1089 aa13.84□□□□□ -0.19
LIG1-201ENST00000263274 DDX4Q9NQI0 724 aaKnown RBP13.84□□□□□ -0.19
LIG1-201ENST00000263274 POLLQ9UGP5 575 aa13.84□□□□□ -0.19
LIG1-201ENST00000263274 PLCH1Q4KWH8 1693 aa13.83□□□□□ -0.19
LIG1-201ENST00000263274 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP13.83□□□□□ -0.19
LIG1-201ENST00000263274 TMEM110-MUSTN1A8MSY1 372 aa13.83□□□□□ -0.19
LIG1-201ENST00000263274 CYP11B2P19099 503 aa13.83□□□□□ -0.19
LIG1-201ENST00000263274 GBP6Q6ZN66 633 aa13.83□□□□□ -0.19
LIG1-201ENST00000263274 KSR1Q8IVT5 923 aa13.83□□□□□ -0.19
LIG1-201ENST00000263274 UHMK1Q8TAS1 419 aaKnown RBP13.83□□□□□ -0.19
LIG1-201ENST00000263274 BHMT2Q9H2M3 363 aa13.83□□□□□ -0.19
LIG1-201ENST00000263274 AMACRQ9UHK6 382 aa13.83□□□□□ -0.19
LIG1-201ENST00000263274 CASZ1Q86V15 1759 aa13.83□□□□□ -0.2
LIG1-201ENST00000263274 GRID2IPA4D2P6 1211 aa13.83□□□□□ -0.2
LIG1-201ENST00000263274 SPDYE3A6NKU9 549 aa13.83□□□□□ -0.2
LIG1-201ENST00000263274 ZBTB5O15062 677 aa13.83□□□□□ -0.2
LIG1-201ENST00000263274 TRIM37O94972 964 aa13.83□□□□□ -0.2
LIG1-201ENST00000263274 MYBP10242 640 aa13.83□□□□□ -0.2
LIG1-201ENST00000263274 ATP2B4P23634 1241 aa13.83□□□□□ -0.2
LIG1-201ENST00000263274 IFT88Q13099 833 aa13.83□□□□□ -0.2
LIG1-201ENST00000263274 QRICH1Q2TAL8 776 aa13.83□□□□□ -0.2
LIG1-201ENST00000263274 SPICE1Q8N0Z3 855 aa13.83□□□□□ -0.2
LIG1-201ENST00000263274 ANO3Q9BYT9 981 aa13.83□□□□□ -0.2
LIG1-201ENST00000263274 ZNF233A6NK53 670 aa13.83□□□□□ -0.2
LIG1-201ENST00000263274 COPB2P35606 906 aa13.83□□□□□ -0.2
LIG1-201ENST00000263274 CASP4P49662 377 aa13.83□□□□□ -0.2
LIG1-201ENST00000263274 PRR5LQ6MZQ0 368 aa13.83□□□□□ -0.2
LIG1-201ENST00000263274 ZNF571Q7Z3V5 609 aaPredicted RBP13.83□□□□□ -0.2
LIG1-201ENST00000263274 KDM3AQ9Y4C1 1321 aa13.82□□□□□ -0.2
LIG1-201ENST00000263274 ESYT2A0FGR8 921 aa13.82□□□□□ -0.2
LIG1-201ENST00000263274 GCOM1H8Y6P7 765 aaPredicted RBP13.82□□□□□ -0.2
LIG1-201ENST00000263274 GNA14O95837 355 aa13.82□□□□□ -0.2
LIG1-201ENST00000263274 AFPP02771 609 aaKnown RBP13.82□□□□□ -0.2
LIG1-201ENST00000263274 SERPINB2P05120 415 aa13.82□□□□□ -0.2
LIG1-201ENST00000263274 MYZAPP0CAP1 466 aa13.82□□□□□ -0.2
LIG1-201ENST00000263274 ZNF772Q68DY9 489 aaPredicted RBP13.82□□□□□ -0.2
LIG1-201ENST00000263274 CCDC91Q7Z6B0 441 aa13.82□□□□□ -0.2
LIG1-201ENST00000263274 TRIM59Q8IWR1 403 aa13.82□□□□□ -0.2
LIG1-201ENST00000263274 TPH2Q8IWU9 490 aa13.82□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms