RNA–Protein interactions for RNA: ENST00000262554.6

SPTLC1-201, Transcript of serine palmitoyltransferase long chain base subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SPTLC1, Length 1,894 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPTLC1-201ENST00000262554 ARHGAP27Q6ZUM4 889 aa14.28□□□□□ -0.12
SPTLC1-201ENST00000262554 EPM2AIP1Q7L775 607 aaPredicted RBP14.28□□□□□ -0.12
SPTLC1-201ENST00000262554 RIT2Q99578 217 aa14.28□□□□□ -0.12
SPTLC1-201ENST00000262554 NAPGQ99747 312 aaPredicted RBP14.28□□□□□ -0.12
SPTLC1-201ENST00000262554 ARID3AQ99856 593 aa14.28□□□□□ -0.12
SPTLC1-201ENST00000262554 PNMA2Q9UL42 364 aa14.28□□□□□ -0.12
SPTLC1-201ENST00000262554 PLAGL2Q9UPG8 496 aa14.28□□□□□ -0.12
SPTLC1-201ENST00000262554 TRAF3IP3Q9Y228 551 aa14.28□□□□□ -0.12
SPTLC1-201ENST00000262554 CTDP1Q9Y5B0 961 aaPredicted RBP14.28□□□□□ -0.12
SPTLC1-201ENST00000262554 UTP18Q9Y5J1 556 aaKnown RBP eCLIP14.28□□□□□ -0.12
SPTLC1-201ENST00000262554 CD2APQ9Y5K6 639 aa14.28□□□□□ -0.12
SPTLC1-201ENST00000262554 IPO5O00410 1097 aaKnown RBP14.27□□□□□ -0.12
SPTLC1-201ENST00000262554 CALUO43852 315 aaPredicted RBP14.27□□□□□ -0.12
SPTLC1-201ENST00000262554 ARP10275 920 aa14.27□□□□□ -0.12
SPTLC1-201ENST00000262554 BCRP11274 1271 aa14.27□□□□□ -0.12
SPTLC1-201ENST00000262554 ERCC3P19447 782 aa14.27□□□□□ -0.12
SPTLC1-201ENST00000262554 USP14P54578 494 aa14.27□□□□□ -0.12
SPTLC1-201ENST00000262554 HERVK_113P62684 666 aa14.27□□□□□ -0.12
SPTLC1-201ENST00000262554 TRIM59Q8IWR1 403 aa14.27□□□□□ -0.12
SPTLC1-201ENST00000262554 CPXCR1Q8N123 301 aa14.27□□□□□ -0.12
SPTLC1-201ENST00000262554 SAMD3Q8N6K7 520 aa14.27□□□□□ -0.12
SPTLC1-201ENST00000262554 PIGOQ8TEQ8 1089 aa14.27□□□□□ -0.12
SPTLC1-201ENST00000262554 CLEC4DQ8WXI8 215 aa14.27□□□□□ -0.12
SPTLC1-201ENST00000262554 CCDC42Q96M95 316 aa14.27□□□□□ -0.12
SPTLC1-201ENST00000262554 NACC1Q96RE7 527 aa14.27□□□□□ -0.12
SPTLC1-201ENST00000262554 UNC45AQ9H3U1 944 aa14.27□□□□□ -0.12
SPTLC1-201ENST00000262554 SLC38A10Q9HBR0 1119 aa14.27□□□□□ -0.12
SPTLC1-201ENST00000262554 CREBZFQ9NS37 354 aa14.27□□□□□ -0.12
SPTLC1-201ENST00000262554 MAP3K20Q9NYL2 800 aaKnown RBP14.27□□□□□ -0.12
SPTLC1-201ENST00000262554 GUCA1BQ9UMX6 200 aa14.27□□□□□ -0.12
SPTLC1-201ENST00000262554 RPTORQ8N122 1335 aa14.27□□□□□ -0.12
SPTLC1-201ENST00000262554 GOLGB1Q14789 3259 aaKnown RBP14.27□□□□□ -0.13
SPTLC1-201ENST00000262554 FZD9O00144 591 aa14.27□□□□□ -0.13
SPTLC1-201ENST00000262554 NFIBO00712 420 aa14.27□□□□□ -0.13
SPTLC1-201ENST00000262554 PDXKO00764 312 aa14.27□□□□□ -0.13
SPTLC1-201ENST00000262554 EPHB6O15197 1021 aa14.27□□□□□ -0.13
SPTLC1-201ENST00000262554 KRT86O43790 486 aa14.27□□□□□ -0.13
SPTLC1-201ENST00000262554 FLOT1O75955 427 aa14.27□□□□□ -0.13
SPTLC1-201ENST00000262554 FAM13AO94988 1023 aa14.27□□□□□ -0.13
SPTLC1-201ENST00000262554 ABL1P00519 1130 aa14.27□□□□□ -0.13
SPTLC1-201ENST00000262554 ALAS1P13196 640 aa14.27□□□□□ -0.13
SPTLC1-201ENST00000262554 NR2F2P24468 414 aa14.27□□□□□ -0.13
SPTLC1-201ENST00000262554 EPS15P42566 896 aa14.27□□□□□ -0.13
SPTLC1-201ENST00000262554 GHRHRQ02643 423 aa14.27□□□□□ -0.13
SPTLC1-201ENST00000262554 EPHA7Q15375 998 aa14.27□□□□□ -0.13
SPTLC1-201ENST00000262554 BMT2Q1RMZ1 405 aa14.27□□□□□ -0.13
SPTLC1-201ENST00000262554 CCDC122Q5T0U0 273 aa14.27□□□□□ -0.13
SPTLC1-201ENST00000262554 FBXO38Q6PIJ6 1188 aa14.27□□□□□ -0.13
SPTLC1-201ENST00000262554 NIPA1Q7RTP0 329 aa14.27□□□□□ -0.13
SPTLC1-201ENST00000262554 CACNA2D4Q7Z3S7 1137 aa14.27□□□□□ -0.13
SPTLC1-201ENST00000262554 EHBP1Q8NDI1 1231 aa14.27□□□□□ -0.13
SPTLC1-201ENST00000262554 NEK9Q8TD19 979 aa14.27□□□□□ -0.13
SPTLC1-201ENST00000262554 OLFML3Q9NRN5 406 aa14.27□□□□□ -0.13
SPTLC1-201ENST00000262554 CDC23Q9UJX2 597 aa14.27□□□□□ -0.13
SPTLC1-201ENST00000262554 RSPH10B2B2RC85 870 aa14.26□□□□□ -0.13
SPTLC1-201ENST00000262554 PRPF6O94906 941 aaKnown RBP14.26□□□□□ -0.13
SPTLC1-201ENST00000262554 GCNT3O95395 438 aa14.26□□□□□ -0.13
SPTLC1-201ENST00000262554 RSPH10BP0C881 870 aa14.26□□□□□ -0.13
SPTLC1-201ENST00000262554 MYBP10242 640 aa14.26□□□□□ -0.13
SPTLC1-201ENST00000262554 RASSF7Q02833 373 aa14.26□□□□□ -0.13
SPTLC1-201ENST00000262554 MTMR2Q13614 643 aa14.26□□□□□ -0.13
SPTLC1-201ENST00000262554 SPA17Q15506 151 aa14.26□□□□□ -0.13
SPTLC1-201ENST00000262554 SLC30A10Q6XR72 485 aa14.26□□□□□ -0.13
SPTLC1-201ENST00000262554 C1orf186Q6ZWK4 172 aa14.26□□□□□ -0.13
SPTLC1-201ENST00000262554 RRAGAQ7L523 313 aa14.26□□□□□ -0.13
SPTLC1-201ENST00000262554 SMCR8Q8TEV9 937 aaPredicted RBP14.26□□□□□ -0.13
SPTLC1-201ENST00000262554 JAKMIP2Q96AA8 810 aa14.26□□□□□ -0.13
SPTLC1-201ENST00000262554 ZFP91Q96JP5 570 aaPredicted RBP14.26□□□□□ -0.13
SPTLC1-201ENST00000262554 NUCKS1Q9H1E3 243 aaKnown RBP14.26□□□□□ -0.13
SPTLC1-201ENST00000262554 RAVER2Q9HCJ3 691 aaKnown RBP14.26□□□□□ -0.13
SPTLC1-201ENST00000262554 TYW1Q9NV66 732 aaKnown RBP14.26□□□□□ -0.13
SPTLC1-201ENST00000262554 KCND2Q9NZV8 630 aa14.26□□□□□ -0.13
SPTLC1-201ENST00000262554 CEP72Q9P209 647 aa14.26□□□□□ -0.13
SPTLC1-201ENST00000262554 PPP1R9AQ9ULJ8 1098 aa14.26□□□□□ -0.13
SPTLC1-201ENST00000262554 ASTN2O75129 1339 aaPredicted RBP14.26□□□□□ -0.13
SPTLC1-201ENST00000262554 LRRC53A6NM62 1247 aa14.25□□□□□ -0.13
SPTLC1-201ENST00000262554 ZBED4O75132 1171 aa14.25□□□□□ -0.13
SPTLC1-201ENST00000262554 FDX1P10109 184 aa14.25□□□□□ -0.13
SPTLC1-201ENST00000262554 ITGB5P18084 799 aa14.25□□□□□ -0.13
SPTLC1-201ENST00000262554 VCAM1P19320 739 aa14.25□□□□□ -0.13
SPTLC1-201ENST00000262554 RPL13P26373 211 aaKnown RBP14.25□□□□□ -0.13
SPTLC1-201ENST00000262554 KCNMA1Q12791 1236 aa14.25□□□□□ -0.13
SPTLC1-201ENST00000262554 NBPF12Q5TAG4 269 aaPredicted RBP14.25□□□□□ -0.13
SPTLC1-201ENST00000262554 PDXDC1Q6P996 788 aa14.25□□□□□ -0.13
SPTLC1-201ENST00000262554 FRMD5Q7Z6J6 570 aa14.25□□□□□ -0.13
SPTLC1-201ENST00000262554 MYCT1Q8N699 235 aa14.25□□□□□ -0.13
SPTLC1-201ENST00000262554 CEP112Q8N8E3 955 aa14.25□□□□□ -0.13
SPTLC1-201ENST00000262554 GOLGA1Q92805 767 aa14.25□□□□□ -0.13
SPTLC1-201ENST00000262554 TSGA10Q9BZW7 698 aa14.25□□□□□ -0.13
SPTLC1-201ENST00000262554 DEF6Q9H4E7 631 aa14.25□□□□□ -0.13
SPTLC1-201ENST00000262554 COL20A1Q9P218 1284 aa14.25□□□□□ -0.13
SPTLC1-201ENST00000262554 FRMPD4Q14CM0 1322 aa14.25□□□□□ -0.13
SPTLC1-201ENST00000262554 MYH11P35749 1972 aa14.25□□□□□ -0.13
SPTLC1-201ENST00000262554 PARP14Q460N5 1801 aa14.25□□□□□ -0.13
SPTLC1-201ENST00000262554 PITPNM1O00562 1244 aa14.25□□□□□ -0.13
SPTLC1-201ENST00000262554 EIF3DO15371 548 aaKnown RBP eCLIP14.25□□□□□ -0.13
SPTLC1-201ENST00000262554 H2AFXP16104 143 aaPredicted RBP14.25□□□□□ -0.13
SPTLC1-201ENST00000262554 HOXD13P35453 343 aa14.25□□□□□ -0.13
SPTLC1-201ENST00000262554 PCNX4Q63HM2 1172 aa14.25□□□□□ -0.13
SPTLC1-201ENST00000262554 B3GNT9Q6UX72 402 aa14.25□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms