RNA–Protein interactions for RNA: ENST00000257604.9

TRAFD1-201, Transcript of TRAF-type zinc finger domain containing 1, humanhuman

APPRIS P2 TSL 2 BASIC

Gene TRAFD1, Length 3,178 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAFD1-201ENST00000257604 GRIPAP1Q4V328 841 aa16.15■□□□□ 0.18
TRAFD1-201ENST00000257604 VWA3BQ502W6 1294 aa16.15■□□□□ 0.18
TRAFD1-201ENST00000257604 ANGEL2Q5VTE6 544 aaKnown RBP16.15■□□□□ 0.18
TRAFD1-201ENST00000257604 WRNIP1Q96S55 665 aa16.15■□□□□ 0.18
TRAFD1-201ENST00000257604 PSMD1Q99460 953 aa16.15■□□□□ 0.18
TRAFD1-201ENST00000257604 WDR11Q9BZH6 1224 aa16.15■□□□□ 0.18
TRAFD1-201ENST00000257604 KCNMB3Q9NPA1 279 aa16.15■□□□□ 0.18
TRAFD1-201ENST00000257604 MYH7BA7E2Y1 1941 aa16.15■□□□□ 0.18
TRAFD1-201ENST00000257604 FAM13AO94988 1023 aa16.15■□□□□ 0.18
TRAFD1-201ENST00000257604 POLR2FP61218 127 aaKnown RBP16.15■□□□□ 0.18
TRAFD1-201ENST00000257604 AP3B2Q13367 1082 aa16.15■□□□□ 0.18
TRAFD1-201ENST00000257604 LRRC10BA6NIK2 292 aa16.14■□□□□ 0.17
TRAFD1-201ENST00000257604 HMGCS2P54868 508 aa16.14■□□□□ 0.17
TRAFD1-201ENST00000257604 TMEM119Q4V9L6 283 aa16.14■□□□□ 0.17
TRAFD1-201ENST00000257604 MIIPQ5JXC2 388 aa16.14■□□□□ 0.17
TRAFD1-201ENST00000257604 ETNPPLQ8TBG4 499 aa16.14■□□□□ 0.17
TRAFD1-201ENST00000257604 NHEJ1Q9H9Q4 299 aaPredicted RBP16.14■□□□□ 0.17
TRAFD1-201ENST00000257604 MAGEF1Q9HAY2 307 aa16.14■□□□□ 0.17
TRAFD1-201ENST00000257604 UTP18Q9Y5J1 556 aaKnown RBP eCLIP16.14■□□□□ 0.17
TRAFD1-201ENST00000257604 ZHX2Q9Y6X8 837 aa16.14■□□□□ 0.17
TRAFD1-201ENST00000257604 SPATA31C1P0DKV0 1188 aa16.14■□□□□ 0.17
TRAFD1-201ENST00000257604 ACTN1P12814 892 aa16.14■□□□□ 0.17
TRAFD1-201ENST00000257604 MATR3P43243 847 aaKnown RBP eCLIP16.14■□□□□ 0.17
TRAFD1-201ENST00000257604 CYP2J2P51589 502 aa16.14■□□□□ 0.17
TRAFD1-201ENST00000257604 RAPGEF1Q13905 1077 aa16.14■□□□□ 0.17
TRAFD1-201ENST00000257604 CT47A1Q5JQC4 288 aaPredicted RBP16.14■□□□□ 0.17
TRAFD1-201ENST00000257604 CENPPQ6IPU0 288 aa16.14■□□□□ 0.17
TRAFD1-201ENST00000257604 RABGGTAQ92696 567 aa16.14■□□□□ 0.17
TRAFD1-201ENST00000257604 LENG9Q96B70 501 aa16.14■□□□□ 0.17
TRAFD1-201ENST00000257604 UBXN6Q9BZV1 441 aa16.14■□□□□ 0.17
TRAFD1-201ENST00000257604 FAN1Q9Y2M0 1017 aa16.14■□□□□ 0.17
TRAFD1-201ENST00000257604 KDM3AQ9Y4C1 1321 aa16.14■□□□□ 0.17
TRAFD1-201ENST00000257604 COL4A5P29400 1685 aa16.14■□□□□ 0.17
TRAFD1-201ENST00000257604 FOSP01100 380 aaPredicted RBP16.14■□□□□ 0.17
TRAFD1-201ENST00000257604 SREBF1P36956 1147 aa16.14■□□□□ 0.17
TRAFD1-201ENST00000257604 FKBP1AP62942 108 aaKnown RBP16.14■□□□□ 0.17
TRAFD1-201ENST00000257604 MUM1L1Q5H9M0 696 aa16.14■□□□□ 0.17
TRAFD1-201ENST00000257604 SCFD1Q8WVM8 642 aa16.14■□□□□ 0.17
TRAFD1-201ENST00000257604 LSM14BQ9BX40 385 aaKnown RBP16.14■□□□□ 0.17
TRAFD1-201ENST00000257604 GLT8D2Q9H1C3 349 aa16.14■□□□□ 0.17
TRAFD1-201ENST00000257604 MRPL11Q9Y3B7 192 aaKnown RBP16.14■□□□□ 0.17
TRAFD1-201ENST00000257604 PVALEFA0A1B0GWK0 134 aa16.13■□□□□ 0.17
TRAFD1-201ENST00000257604 LRRC53A6NM62 1247 aa16.13■□□□□ 0.17
TRAFD1-201ENST00000257604 GUF1Q8N442 669 aaKnown RBP16.13■□□□□ 0.17
TRAFD1-201ENST00000257604 CASP4P49662 377 aa16.13■□□□□ 0.17
TRAFD1-201ENST00000257604 FKBP3Q00688 224 aaKnown RBP16.13■□□□□ 0.17
TRAFD1-201ENST00000257604 WDR59Q6PJI9 974 aa16.13■□□□□ 0.17
TRAFD1-201ENST00000257604 ZNF507Q8TCN5 953 aa16.13■□□□□ 0.17
TRAFD1-201ENST00000257604 LACRTQ9GZZ8 138 aa16.13■□□□□ 0.17
TRAFD1-201ENST00000257604 ABCB6Q9NP58 842 aa16.13■□□□□ 0.17
TRAFD1-201ENST00000257604 JADE2Q9NQC1 790 aa16.13■□□□□ 0.17
TRAFD1-201ENST00000257604 COL20A1Q9P218 1284 aa16.13■□□□□ 0.17
TRAFD1-201ENST00000257604 CTAGE9A4FU28 777 aa16.12■□□□□ 0.17
TRAFD1-201ENST00000257604 IPO5O00410 1097 aaKnown RBP16.12■□□□□ 0.17
TRAFD1-201ENST00000257604 RNASE9P60153 205 aaKnown RBP16.12■□□□□ 0.17
TRAFD1-201ENST00000257604 CEP55Q53EZ4 464 aa16.12■□□□□ 0.17
TRAFD1-201ENST00000257604 GSPT2Q8IYD1 628 aaKnown RBP16.12■□□□□ 0.17
TRAFD1-201ENST00000257604 LRRC27Q9C0I9 530 aa16.12■□□□□ 0.17
TRAFD1-201ENST00000257604 RPAP3Q9H6T3 665 aaPredicted RBP16.12■□□□□ 0.17
TRAFD1-201ENST00000257604 BUB1O43683 1085 aa16.12■□□□□ 0.17
TRAFD1-201ENST00000257604 COG2Q14746 738 aa16.12■□□□□ 0.17
TRAFD1-201ENST00000257604 TNIP1Q15025 636 aa16.12■□□□□ 0.17
TRAFD1-201ENST00000257604 SPA17Q15506 151 aa16.12■□□□□ 0.17
TRAFD1-201ENST00000257604 SYCP3Q8IZU3 236 aa16.12■□□□□ 0.17
TRAFD1-201ENST00000257604 RIN2Q8WYP3 895 aaPredicted RBP16.12■□□□□ 0.17
TRAFD1-201ENST00000257604 ATG4CQ96DT6 458 aa16.12■□□□□ 0.17
TRAFD1-201ENST00000257604 PCIF1Q9H4Z3 704 aa16.12■□□□□ 0.17
TRAFD1-201ENST00000257604 ANKZF1Q9H8Y5 726 aa16.12■□□□□ 0.17
TRAFD1-201ENST00000257604 COL4A3BPQ9Y5P4 624 aa16.12■□□□□ 0.17
TRAFD1-201ENST00000257604 RCCD1A6NED2 376 aa16.12■□□□□ 0.17
TRAFD1-201ENST00000257604 RASSF10A6NK89 507 aa16.12■□□□□ 0.17
TRAFD1-201ENST00000257604 CXCR5P32302 372 aa16.12■□□□□ 0.17
TRAFD1-201ENST00000257604 GIT2Q14161 759 aa16.12■□□□□ 0.17
TRAFD1-201ENST00000257604 AGBL3Q8NEM8 1001 aa16.12■□□□□ 0.17
TRAFD1-201ENST00000257604 CAGE1Q8TC20 777 aa16.12■□□□□ 0.17
TRAFD1-201ENST00000257604 TAAR1Q96RJ0 339 aa16.12■□□□□ 0.17
TRAFD1-201ENST00000257604 GOLGA6L9A6NEM1 432 aa16.11■□□□□ 0.17
TRAFD1-201ENST00000257604 EIF4A3P38919 411 aaKnown RBP16.11■□□□□ 0.17
TRAFD1-201ENST00000257604 MAN2A1Q16706 1144 aa16.11■□□□□ 0.17
TRAFD1-201ENST00000257604 JAKMIP2Q96AA8 810 aa16.11■□□□□ 0.17
TRAFD1-201ENST00000257604 SH2D4AQ9H788 454 aa16.11■□□□□ 0.17
TRAFD1-201ENST00000257604 WRAP73Q9P2S5 460 aaPredicted RBP16.11■□□□□ 0.17
TRAFD1-201ENST00000257604 LTBP1Q14766 1721 aa16.11■□□□□ 0.17
TRAFD1-201ENST00000257604 MYO1CO00159 1063 aa16.11■□□□□ 0.17
TRAFD1-201ENST00000257604 USO1O60763 962 aaKnown RBP16.11■□□□□ 0.17
TRAFD1-201ENST00000257604 GFPT1Q06210 699 aaPredicted RBP16.11■□□□□ 0.17
TRAFD1-201ENST00000257604 ELMO3Q96BJ8 720 aa16.11■□□□□ 0.17
TRAFD1-201ENST00000257604 NAA15Q9BXJ9 866 aaKnown RBP16.11■□□□□ 0.17
TRAFD1-201ENST00000257604 UNC45AQ9H3U1 944 aa16.11■□□□□ 0.17
TRAFD1-201ENST00000257604 CAPN11Q9UMQ6 739 aa16.11■□□□□ 0.17
TRAFD1-201ENST00000257604 CETN3O15182 167 aa16.1■□□□□ 0.17
TRAFD1-201ENST00000257604 FGFR1OPO95684 399 aaKnown RBP16.1■□□□□ 0.17
TRAFD1-201ENST00000257604 RPA1P27694 616 aa16.1■□□□□ 0.17
TRAFD1-201ENST00000257604 SLC12A3P55017 1021 aa16.1■□□□□ 0.17
TRAFD1-201ENST00000257604 SPIRE1Q08AE8 756 aa16.1■□□□□ 0.17
TRAFD1-201ENST00000257604 ODR4Q5SWX8 454 aa16.1■□□□□ 0.17
TRAFD1-201ENST00000257604 SRGAP1Q7Z6B7 1085 aa16.1■□□□□ 0.17
TRAFD1-201ENST00000257604 LXNQ9BS40 222 aa16.1■□□□□ 0.17
TRAFD1-201ENST00000257604 MLXIPQ9HAP2 919 aa16.1■□□□□ 0.17
TRAFD1-201ENST00000257604 PICK1Q9NRD5 415 aa16.1■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 11.6 ms