RNA–Protein interactions for RNA: ENST00000253024.9

TRIM28-201, Transcript of tripartite motif containing 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIM28, Length 2,960 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-201ENST00000253024 TPH2Q8IWU9 490 aa23.42■■□□□ 1.34
TRIM28-201ENST00000253024 OR2W6PQ8NHA6 318 aa23.42■■□□□ 1.34
TRIM28-201ENST00000253024 AENQ8WTP8 325 aaKnown RBP23.42■■□□□ 1.34
TRIM28-201ENST00000253024 TDRD3Q9H7E2 651 aaKnown RBP23.42■■□□□ 1.34
TRIM28-201ENST00000253024 ATP6V0A2Q9Y487 856 aa23.42■■□□□ 1.34
TRIM28-201ENST00000253024 BTAF1O14981 1849 aa23.42■■□□□ 1.34
TRIM28-201ENST00000253024 ABCB4P21439 1286 aa23.41■■□□□ 1.34
TRIM28-201ENST00000253024 CLK2P49760 499 aaKnown RBP23.41■■□□□ 1.34
TRIM28-201ENST00000253024 ICA1Q05084 483 aa23.41■■□□□ 1.34
TRIM28-201ENST00000253024 RUSC1Q9BVN2 902 aa23.41■■□□□ 1.34
TRIM28-201ENST00000253024 DHX36Q9H2U1 1008 aaKnown RBP23.41■■□□□ 1.34
TRIM28-201ENST00000253024 CEP72Q9P209 647 aa23.41■■□□□ 1.34
TRIM28-201ENST00000253024 SMCHD1A6NHR9 2005 aa23.41■■□□□ 1.34
TRIM28-201ENST00000253024 POLRMTO00411 1230 aaKnown RBP23.41■■□□□ 1.34
TRIM28-201ENST00000253024 CETN3O15182 167 aa23.41■■□□□ 1.34
TRIM28-201ENST00000253024 CEP104O60308 925 aa23.41■■□□□ 1.34
TRIM28-201ENST00000253024 AKAP3O75969 853 aa23.41■■□□□ 1.34
TRIM28-201ENST00000253024 TCP1P17987 556 aaKnown RBP23.41■■□□□ 1.34
TRIM28-201ENST00000253024 NMT1P30419 496 aaKnown RBP23.41■■□□□ 1.34
TRIM28-201ENST00000253024 COPB2P35606 906 aa23.41■■□□□ 1.34
TRIM28-201ENST00000253024 ZNF571Q7Z3V5 609 aaPredicted RBP23.41■■□□□ 1.34
TRIM28-201ENST00000253024 MYH7BA7E2Y1 1941 aa23.41■■□□□ 1.34
TRIM28-201ENST00000253024 F5H6K3 240 aa23.4■■□□□ 1.34
TRIM28-201ENST00000253024 MEIS2O14770 477 aa23.4■■□□□ 1.34
TRIM28-201ENST00000253024 SERPING1P05155 500 aa23.4■■□□□ 1.34
TRIM28-201ENST00000253024 HNRNPH3P31942 346 aaKnown RBP23.4■■□□□ 1.34
TRIM28-201ENST00000253024 KLRC3Q07444 240 aa23.4■■□□□ 1.34
TRIM28-201ENST00000253024 TRIM59Q8IWR1 403 aa23.4■■□□□ 1.34
TRIM28-201ENST00000253024 ELMO3Q96BJ8 720 aa23.4■■□□□ 1.34
TRIM28-201ENST00000253024 FAM163AQ96GL9 167 aaPredicted RBP23.4■■□□□ 1.34
TRIM28-201ENST00000253024 IGKV6D-41A0A0C4DH26 115 aa23.4■■□□□ 1.34
TRIM28-201ENST00000253024 SPDYE3A6NKU9 549 aa23.4■■□□□ 1.34
TRIM28-201ENST00000253024 EML1O00423 815 aa23.4■■□□□ 1.34
TRIM28-201ENST00000253024 PPP1R2P41236 205 aa23.4■■□□□ 1.34
TRIM28-201ENST00000253024 GNGT1P63211 74 aa23.4■■□□□ 1.34
TRIM28-201ENST00000253024 TUBB4BP68371 445 aa23.4■■□□□ 1.34
TRIM28-201ENST00000253024 MKRN4PQ13434 485 aaPredicted RBP23.4■■□□□ 1.34
TRIM28-201ENST00000253024 MUM1L1Q5H9M0 696 aa23.4■■□□□ 1.34
TRIM28-201ENST00000253024 ZIM3Q96PE6 472 aa23.4■■□□□ 1.34
TRIM28-201ENST00000253024 AHDC1Q5TGY3 1603 aaPredicted RBP23.4■■□□□ 1.34
TRIM28-201ENST00000253024 TARSL2A2RTX5 802 aaKnown RBP23.4■■□□□ 1.34
TRIM28-201ENST00000253024 CFAP221Q4G0U5 840 aa23.4■■□□□ 1.34
TRIM28-201ENST00000253024 KCTD10Q9H3F6 313 aa23.4■■□□□ 1.34
TRIM28-201ENST00000253024 ARMCX3Q9UH62 379 aaPredicted RBP23.4■■□□□ 1.34
TRIM28-201ENST00000253024 GFPT2O94808 682 aa23.39■■□□□ 1.34
TRIM28-201ENST00000253024 GH2P01242 217 aa23.39■■□□□ 1.34
TRIM28-201ENST00000253024 MCM3P25205 808 aa23.39■■□□□ 1.34
TRIM28-201ENST00000253024 ECE1P42892 770 aa23.39■■□□□ 1.34
TRIM28-201ENST00000253024 CDK17Q00537 523 aa23.39■■□□□ 1.34
TRIM28-201ENST00000253024 RPGRIP1Q96KN7 1286 aa23.39■■□□□ 1.34
TRIM28-201ENST00000253024 PSD3Q9NYI0 1048 aa23.39■■□□□ 1.34
TRIM28-201ENST00000253024 PCDHA2Q9Y5H9 948 aa23.39■■□□□ 1.34
TRIM28-201ENST00000253024 HPDP32754 393 aaPredicted RBP23.39■■□□□ 1.33
TRIM28-201ENST00000253024 HOXD13P35453 343 aa23.39■■□□□ 1.33
TRIM28-201ENST00000253024 PRPF4BQ13523 1007 aaKnown RBP23.39■■□□□ 1.33
TRIM28-201ENST00000253024 TTMPQ5BVD1 217 aa23.39■■□□□ 1.33
TRIM28-201ENST00000253024 GPATCH4Q5T3I0 446 aaKnown RBP23.39■■□□□ 1.33
TRIM28-201ENST00000253024 SH3BP5LQ7L8J4 393 aa23.39■■□□□ 1.33
TRIM28-201ENST00000253024 GJD4Q96KN9 370 aaPredicted RBP23.39■■□□□ 1.33
TRIM28-201ENST00000253024 GRID2IPA4D2P6 1211 aa23.38■■□□□ 1.33
TRIM28-201ENST00000253024 TULP2O00295 520 aa23.38■■□□□ 1.33
TRIM28-201ENST00000253024 BACH1O14867 736 aa23.38■■□□□ 1.33
TRIM28-201ENST00000253024 RBM46Q8TBY0 533 aaKnown RBP23.38■■□□□ 1.33
TRIM28-201ENST00000253024 DNM3Q9UQ16 869 aa23.38■■□□□ 1.33
TRIM28-201ENST00000253024 CYP2J2P51589 502 aa23.38■■□□□ 1.33
TRIM28-201ENST00000253024 PDE4CQ08493 712 aa23.38■■□□□ 1.33
TRIM28-201ENST00000253024 GIT2Q14161 759 aa23.38■■□□□ 1.33
TRIM28-201ENST00000253024 MAATS1Q7Z4T9 603 aa23.38■■□□□ 1.33
TRIM28-201ENST00000253024 MMGT1Q8N4V1 131 aa23.38■■□□□ 1.33
TRIM28-201ENST00000253024 NT5C3AQ9H0P0 336 aa23.38■■□□□ 1.33
TRIM28-201ENST00000253024 DDX47Q9H0S4 455 aaKnown RBP23.38■■□□□ 1.33
TRIM28-201ENST00000253024 BCCIPQ9P287 314 aaKnown RBP eCLIP23.38■■□□□ 1.33
TRIM28-201ENST00000253024 CLRN2A0PK11 232 aa23.37■■□□□ 1.33
TRIM28-201ENST00000253024 LRRN2O75325 713 aa23.37■■□□□ 1.33
TRIM28-201ENST00000253024 SLC12A3P55017 1021 aa23.37■■□□□ 1.33
TRIM28-201ENST00000253024 SLC18A3Q16572 532 aa23.37■■□□□ 1.33
TRIM28-201ENST00000253024 RAD51CO43502 376 aa23.37■■□□□ 1.33
TRIM28-201ENST00000253024 TUBBP07437 444 aa23.37■■□□□ 1.33
TRIM28-201ENST00000253024 TRIM49P0CI25 452 aa23.37■■□□□ 1.33
TRIM28-201ENST00000253024 TRIM49CP0CI26 452 aa23.37■■□□□ 1.33
TRIM28-201ENST00000253024 SIAH1Q8IUQ4 282 aa23.37■■□□□ 1.33
TRIM28-201ENST00000253024 BCAS4Q8TDM0 211 aa23.37■■□□□ 1.33
TRIM28-201ENST00000253024 U2AF1L4Q8WU68 220 aaKnown RBP23.37■■□□□ 1.33
TRIM28-201ENST00000253024 COA1Q9GZY4 146 aa23.37■■□□□ 1.33
TRIM28-201ENST00000253024 ZBTB21Q9ULJ3 1066 aa23.37■■□□□ 1.33
TRIM28-201ENST00000253024 HSF2BPO75031 334 aa23.37■■□□□ 1.33
TRIM28-201ENST00000253024 SPATA31C1P0DKV0 1188 aa23.37■■□□□ 1.33
TRIM28-201ENST00000253024 UCHL3P15374 230 aa23.37■■□□□ 1.33
TRIM28-201ENST00000253024 PSMD2Q13200 908 aa23.37■■□□□ 1.33
TRIM28-201ENST00000253024 EXOC3L4Q17RC7 722 aa23.37■■□□□ 1.33
TRIM28-201ENST00000253024 CASKIN2Q8WXE0 1202 aa23.37■■□□□ 1.33
TRIM28-201ENST00000253024 ADAMTSL1Q8N6G6 1762 aa23.36■■□□□ 1.33
TRIM28-201ENST00000253024 NDUFB10O96000 172 aa23.36■■□□□ 1.33
TRIM28-201ENST00000253024 XRCC5P13010 732 aaKnown RBP23.36■■□□□ 1.33
TRIM28-201ENST00000253024 AARSP49588 968 aaKnown RBP eCLIP23.36■■□□□ 1.33
TRIM28-201ENST00000253024 ARHGAP44Q17R89 818 aa23.36■■□□□ 1.33
TRIM28-201ENST00000253024 CERKQ8TCT0 537 aa23.36■■□□□ 1.33
TRIM28-201ENST00000253024 RASSF4Q9H2L5 321 aa23.36■■□□□ 1.33
TRIM28-201ENST00000253024 GCNT4Q9P109 453 aa23.36■■□□□ 1.33
TRIM28-201ENST00000253024 ATF5Q9Y2D1 282 aaPredicted RBP23.36■■□□□ 1.33
Retrieved 100 of 20,778 RNA–protein pairs in 42.4 ms