RNA–Protein interactions for RNA: ENST00000251722.10

USP40-201, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene USP40, Length 5,692 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-201ENST00000251722 S100BP04271 92 aaPredicted RBP13.8□□□□□ -0.2
USP40-201ENST00000251722 TROVE2P10155 538 aaKnown RBP eCLIP13.8□□□□□ -0.2
USP40-201ENST00000251722 STRIP1Q5VSL9 837 aa13.8□□□□□ -0.2
USP40-201ENST00000251722 SCYL2Q6P3W7 929 aa13.8□□□□□ -0.2
USP40-201ENST00000251722 KRT12Q99456 494 aa13.8□□□□□ -0.2
USP40-201ENST00000251722 RNF14Q9UBS8 474 aa13.8□□□□□ -0.2
USP40-201ENST00000251722 CPDO75976 1380 aa13.8□□□□□ -0.2
USP40-201ENST00000251722 QRICH2Q9H0J4 1663 aa13.8□□□□□ -0.2
USP40-201ENST00000251722 AP3M2P53677 418 aa13.8□□□□□ -0.2
USP40-201ENST00000251722 GOLGA8FQ08AF8 430 aa13.8□□□□□ -0.2
USP40-201ENST00000251722 GOLGA8DPQ0D2H9 430 aa13.8□□□□□ -0.2
USP40-201ENST00000251722 LRMPQ12912 555 aa13.8□□□□□ -0.2
USP40-201ENST00000251722 ARL13BQ3SXY8 428 aa13.8□□□□□ -0.2
USP40-201ENST00000251722 GRAMD4Q6IC98 578 aa13.8□□□□□ -0.2
USP40-201ENST00000251722 SESTD1Q86VW0 696 aa13.8□□□□□ -0.2
USP40-201ENST00000251722 DISC1Q9NRI5 854 aa13.8□□□□□ -0.2
USP40-201ENST00000251722 AFG3L2Q9Y4W6 797 aa13.8□□□□□ -0.2
USP40-201ENST00000251722 CLTCQ00610 1675 aaKnown RBP13.8□□□□□ -0.2
USP40-201ENST00000251722 SPATA31A1Q5TZJ5 1347 aa13.8□□□□□ -0.2
USP40-201ENST00000251722 PASKQ96RG2 1323 aa13.8□□□□□ -0.2
USP40-201ENST00000251722 CNTNAP4Q9C0A0 1308 aa13.8□□□□□ -0.2
USP40-201ENST00000251722 MYO1FO00160 1098 aa13.79□□□□□ -0.2
USP40-201ENST00000251722 CCT5P48643 541 aa13.79□□□□□ -0.2
USP40-201ENST00000251722 COPB1P53618 953 aaKnown RBP13.79□□□□□ -0.2
USP40-201ENST00000251722 MAP3K7CLP57077 242 aa13.79□□□□□ -0.2
USP40-201ENST00000251722 KIF23Q02241 960 aaPredicted RBP13.79□□□□□ -0.2
USP40-201ENST00000251722 CRYMQ14894 314 aa13.79□□□□□ -0.2
USP40-201ENST00000251722 WRNIP1Q96S55 665 aa13.79□□□□□ -0.2
USP40-201ENST00000251722 ACAD9Q9H845 621 aa13.79□□□□□ -0.2
USP40-201ENST00000251722 RWDD2AQ9UIY3 292 aa13.79□□□□□ -0.2
USP40-201ENST00000251722 ANAPC5Q9UJX4 755 aa13.79□□□□□ -0.2
USP40-201ENST00000251722 DIP2CQ9Y2E4 1556 aa13.79□□□□□ -0.2
USP40-201ENST00000251722 PNPLA7Q6ZV29 1317 aa13.79□□□□□ -0.2
USP40-201ENST00000251722 KIAA0391O15091 583 aaKnown RBP13.79□□□□□ -0.2
USP40-201ENST00000251722 ENTPD3O75355 529 aa13.79□□□□□ -0.2
USP40-201ENST00000251722 BFSP1Q12934 665 aa13.79□□□□□ -0.2
USP40-201ENST00000251722 TBC1D9BQ66K14 1250 aa13.79□□□□□ -0.2
USP40-201ENST00000251722 CCDC62Q6P9F0 684 aa13.79□□□□□ -0.2
USP40-201ENST00000251722 PPP4R1Q8TF05 950 aa13.79□□□□□ -0.2
USP40-201ENST00000251722 CNOT6LQ96LI5 555 aaKnown RBP13.79□□□□□ -0.2
USP40-201ENST00000251722 SEL1LQ9UBV2 794 aa13.79□□□□□ -0.2
USP40-201ENST00000251722 PCYT1AP49585 367 aa13.79□□□□□ -0.2
USP40-201ENST00000251722 TMTC3Q6ZXV5 915 aa13.79□□□□□ -0.2
USP40-201ENST00000251722 PRPF38AQ8NAV1 312 aaKnown RBP13.79□□□□□ -0.2
USP40-201ENST00000251722 LPAR1Q92633 364 aa13.79□□□□□ -0.2
USP40-201ENST00000251722 OSBP2Q969R2 916 aa13.79□□□□□ -0.2
USP40-201ENST00000251722 LRRC4Q9HBW1 653 aa13.79□□□□□ -0.2
USP40-201ENST00000251722 TPD52L2O43399 206 aaKnown RBP13.79□□□□□ -0.2
USP40-201ENST00000251722 GH2P01242 217 aa13.79□□□□□ -0.2
USP40-201ENST00000251722 SCP2P22307 547 aa13.79□□□□□ -0.2
USP40-201ENST00000251722 ARL4AP40617 200 aa13.79□□□□□ -0.2
USP40-201ENST00000251722 CYP4A11Q02928 519 aa13.79□□□□□ -0.2
USP40-201ENST00000251722 MAP3K21Q5TCX8 1036 aa13.79□□□□□ -0.2
USP40-201ENST00000251722 APLFQ8IW19 511 aaPredicted RBP13.79□□□□□ -0.2
USP40-201ENST00000251722 SLC39A2Q9NP94 309 aa13.79□□□□□ -0.2
USP40-201ENST00000251722 ETAA1Q9NY74 926 aa13.79□□□□□ -0.2
USP40-201ENST00000251722 ORC4O43929 436 aa13.79□□□□□ -0.2
USP40-201ENST00000251722 PRELPP51888 382 aa13.79□□□□□ -0.2
USP40-201ENST00000251722 POLR2FP61218 127 aaKnown RBP13.79□□□□□ -0.2
USP40-201ENST00000251722 YIPF3Q9GZM5 350 aa13.79□□□□□ -0.2
USP40-201ENST00000251722 PUS7LQ9H0K6 701 aaKnown RBP13.79□□□□□ -0.2
USP40-201ENST00000251722 SMIM23A6NLE4 172 aa13.78□□□□□ -0.2
USP40-201ENST00000251722 FCER1AP12319 257 aa13.78□□□□□ -0.2
USP40-201ENST00000251722 HSPA1LP34931 641 aa13.78□□□□□ -0.2
USP40-201ENST00000251722 SF3B3Q15393 1217 aaKnown RBP13.78□□□□□ -0.2
USP40-201ENST00000251722 CCDC127Q96BQ5 260 aa13.78□□□□□ -0.2
USP40-201ENST00000251722 NOP53Q9NZM5 478 aaKnown RBP13.78□□□□□ -0.2
USP40-201ENST00000251722 MADDQ8WXG6 1647 aa13.78□□□□□ -0.2
USP40-201ENST00000251722 ABL1P00519 1130 aa13.78□□□□□ -0.2
USP40-201ENST00000251722 MB21D1Q8N884 522 aa13.78□□□□□ -0.2
USP40-201ENST00000251722 ZWINTO95229 277 aa13.78□□□□□ -0.2
USP40-201ENST00000251722 MYL3P08590 195 aa13.78□□□□□ -0.2
USP40-201ENST00000251722 CYP2C19P33261 490 aa13.78□□□□□ -0.2
USP40-201ENST00000251722 GRM4Q14833 912 aa13.78□□□□□ -0.2
USP40-201ENST00000251722 SIX6OS1Q8N1H7 587 aa13.78□□□□□ -0.2
USP40-201ENST00000251722 KCTD17Q8N5Z5 321 aa13.78□□□□□ -0.2
USP40-201ENST00000251722 TLR7Q9NYK1 1049 aaKnown RBP13.78□□□□□ -0.2
USP40-201ENST00000251722 SNUPNO95149 360 aaKnown RBP13.78□□□□□ -0.2
USP40-201ENST00000251722 ZRANB2O95218 330 aaKnown RBP eCLIP13.78□□□□□ -0.2
USP40-201ENST00000251722 PLA2G4BP0C869 781 aa13.78□□□□□ -0.2
USP40-201ENST00000251722 MMP19Q99542 508 aa13.78□□□□□ -0.2
USP40-201ENST00000251722 VPS37BQ9H9H4 285 aa13.78□□□□□ -0.2
USP40-201ENST00000251722 TACC3Q9Y6A5 838 aa13.78□□□□□ -0.2
USP40-201ENST00000251722 KRT15P19012 456 aa13.77□□□□□ -0.2
USP40-201ENST00000251722 CCNE1P24864 410 aa13.77□□□□□ -0.2
USP40-201ENST00000251722 E2F5Q15329 346 aa13.77□□□□□ -0.2
USP40-201ENST00000251722 ZNF280CQ8ND82 737 aa13.77□□□□□ -0.2
USP40-201ENST00000251722 CENPKQ9BS16 269 aa13.77□□□□□ -0.2
USP40-201ENST00000251722 TUBGCP2Q9BSJ2 902 aa13.77□□□□□ -0.2
USP40-201ENST00000251722 SCINQ9Y6U3 715 aa13.77□□□□□ -0.2
USP40-201ENST00000251722 HNRNPCP07910 306 aaKnown RBP eCLIP13.77□□□□□ -0.2
USP40-201ENST00000251722 ZNF579Q8NAF0 562 aaKnown RBP13.77□□□□□ -0.2
USP40-201ENST00000251722 PI4K2BQ8TCG2 481 aa13.77□□□□□ -0.2
USP40-201ENST00000251722 PPP2R3CQ969Q6 453 aa13.77□□□□□ -0.2
USP40-201ENST00000251722 XPO4Q9C0E2 1151 aaKnown RBP13.77□□□□□ -0.2
USP40-201ENST00000251722 RMI1Q9H9A7 625 aa13.77□□□□□ -0.2
USP40-201ENST00000251722 ZSWIM5Q9P217 1185 aa13.77□□□□□ -0.2
USP40-201ENST00000251722 ZHX2Q9Y6X8 837 aa13.77□□□□□ -0.2
USP40-201ENST00000251722 PNPLA6Q8IY17 1366 aa13.77□□□□□ -0.2
USP40-201ENST00000251722 K7ERI5 159 aa13.77□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms