RNA–Protein interactions for RNA: ENST00000211998.9

VCL-201, Transcript of vinculin, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene VCL, Length 5,490 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCL-201ENST00000211998 UBTFL6P0CB48 400 aaPredicted RBP11.23□□□□□ -0.61
VCL-201ENST00000211998 FAM47AQ5JRC9 791 aa11.23□□□□□ -0.61
VCL-201ENST00000211998 C10orf76Q5T2E6 689 aa11.23□□□□□ -0.61
VCL-201ENST00000211998 SPATA21Q7Z572 469 aa11.23□□□□□ -0.61
VCL-201ENST00000211998 MCF2L2Q86YR7 1114 aa11.23□□□□□ -0.61
VCL-201ENST00000211998 CRLF3Q8IUI8 442 aa11.23□□□□□ -0.61
VCL-201ENST00000211998 IFNL3Q8IZI9 196 aa11.23□□□□□ -0.61
VCL-201ENST00000211998 SMCR8Q8TEV9 937 aaPredicted RBP11.23□□□□□ -0.61
VCL-201ENST00000211998 LBHD1Q9BQE6 289 aaPredicted RBP11.23□□□□□ -0.61
VCL-201ENST00000211998 TRPV6Q9H1D0 765 aa11.23□□□□□ -0.61
VCL-201ENST00000211998 UPF3AQ9H1J1 476 aaKnown RBP11.23□□□□□ -0.61
VCL-201ENST00000211998 TRPC1P48995 793 aa11.23□□□□□ -0.61
VCL-201ENST00000211998 SLC20A2Q08357 652 aa11.23□□□□□ -0.61
VCL-201ENST00000211998 HADHQ16836 314 aaKnown RBP11.23□□□□□ -0.61
VCL-201ENST00000211998 RSPH3Q86UC2 560 aa11.23□□□□□ -0.61
VCL-201ENST00000211998 TTC17Q96AE7 1141 aa11.23□□□□□ -0.61
VCL-201ENST00000211998 PRMT1Q99873 361 aaKnown RBP11.23□□□□□ -0.61
VCL-201ENST00000211998 IRX2Q9BZI1 471 aaPredicted RBP11.23□□□□□ -0.61
VCL-201ENST00000211998 CUEDC2Q9H467 287 aa11.23□□□□□ -0.61
VCL-201ENST00000211998 PAPOLBQ9NRJ5 636 aaKnown RBP11.23□□□□□ -0.61
VCL-201ENST00000211998 ETAA1Q9NY74 926 aa11.23□□□□□ -0.61
VCL-201ENST00000211998 GINS2Q9Y248 185 aa11.23□□□□□ -0.61
VCL-201ENST00000211998 ARL2BPQ9Y2Y0 163 aa11.23□□□□□ -0.61
VCL-201ENST00000211998 USP17L12C9JPN9 530 aa11.23□□□□□ -0.61
VCL-201ENST00000211998 USP17L21D6R901 530 aa11.23□□□□□ -0.61
VCL-201ENST00000211998 NCK2O43639 380 aa11.23□□□□□ -0.61
VCL-201ENST00000211998 BRAFP15056 766 aa11.23□□□□□ -0.61
VCL-201ENST00000211998 SEC24CP53992 1094 aa11.23□□□□□ -0.61
VCL-201ENST00000211998 FAM26FQ5R3K3 315 aa11.23□□□□□ -0.61
VCL-201ENST00000211998 FANCBQ8NB91 859 aa11.23□□□□□ -0.61
VCL-201ENST00000211998 RNF169Q8NCN4 708 aa11.23□□□□□ -0.61
VCL-201ENST00000211998 ZNF653Q96CK0 615 aa11.23□□□□□ -0.61
VCL-201ENST00000211998 ASCC2Q9H1I8 757 aaPredicted RBP11.23□□□□□ -0.61
VCL-201ENST00000211998 FBXL5Q9UKA1 691 aa11.23□□□□□ -0.61
VCL-201ENST00000211998 MLH3Q9UHC1 1453 aa11.23□□□□□ -0.61
VCL-201ENST00000211998 ESYT2A0FGR8 921 aa11.22□□□□□ -0.61
VCL-201ENST00000211998 KRT19P08727 400 aa11.22□□□□□ -0.61
VCL-201ENST00000211998 KRT81Q14533 505 aa11.22□□□□□ -0.61
VCL-201ENST00000211998 HDAC11Q96DB2 347 aa11.22□□□□□ -0.61
VCL-201ENST00000211998 LRRC1Q9BTT6 524 aa11.22□□□□□ -0.61
VCL-201ENST00000211998 SMYD2Q9NRG4 433 aa11.22□□□□□ -0.61
VCL-201ENST00000211998 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP11.22□□□□□ -0.611e-6■□□□□ 11
VCL-201ENST00000211998 MYOM2P54296 1465 aa11.22□□□□□ -0.61
VCL-201ENST00000211998 MED23Q9ULK4 1368 aa11.22□□□□□ -0.61
VCL-201ENST00000211998 MAP3K7CLP57077 242 aa11.22□□□□□ -0.61
VCL-201ENST00000211998 CCDC15Q0P6D6 951 aa11.22□□□□□ -0.61
VCL-201ENST00000211998 GJC2Q5T442 439 aaPredicted RBP11.22□□□□□ -0.61
VCL-201ENST00000211998 APLFQ8IW19 511 aaPredicted RBP11.22□□□□□ -0.61
VCL-201ENST00000211998 ZBTB8OSQ8IWT0 167 aa11.22□□□□□ -0.61
VCL-201ENST00000211998 TPH2Q8IWU9 490 aa11.22□□□□□ -0.61
VCL-201ENST00000211998 KIF2BQ8N4N8 673 aa11.22□□□□□ -0.61
VCL-201ENST00000211998 TRPC6Q9Y210 931 aa11.22□□□□□ -0.61
VCL-201ENST00000211998 PODXLO00592 558 aa11.22□□□□□ -0.61
VCL-201ENST00000211998 SEMA3EO15041 775 aa11.22□□□□□ -0.61
VCL-201ENST00000211998 LPXNO60711 386 aa11.22□□□□□ -0.61
VCL-201ENST00000211998 OR52Z1P0C646 297 aa11.22□□□□□ -0.61
VCL-201ENST00000211998 PDE6AP16499 860 aa11.22□□□□□ -0.61
VCL-201ENST00000211998 ARFIP2P53365 341 aa11.22□□□□□ -0.61
VCL-201ENST00000211998 DCLK2Q8N568 766 aa11.22□□□□□ -0.61
VCL-201ENST00000211998 EAF2Q96CJ1 260 aaPredicted RBP11.22□□□□□ -0.61
VCL-201ENST00000211998 MMS19Q96T76 1030 aa11.22□□□□□ -0.61
VCL-201ENST00000211998 NACA2Q9H009 215 aa11.22□□□□□ -0.61
VCL-201ENST00000211998 ADGBQ8N7X0 1667 aa11.22□□□□□ -0.61
VCL-201ENST00000211998 TCP11X1B4DZS4 312 aa11.22□□□□□ -0.61
VCL-201ENST00000211998 ADCY3O60266 1144 aa11.22□□□□□ -0.61
VCL-201ENST00000211998 POLR2MP0CAP2 368 aa11.22□□□□□ -0.61
VCL-201ENST00000211998 ERFP50548 548 aa11.22□□□□□ -0.61
VCL-201ENST00000211998 TMPRSS15P98073 1019 aa11.22□□□□□ -0.61
VCL-201ENST00000211998 MTF1Q14872 753 aa11.22□□□□□ -0.61
VCL-201ENST00000211998 CYTH1Q15438 398 aa11.22□□□□□ -0.61
VCL-201ENST00000211998 KRT26Q7Z3Y9 468 aa11.22□□□□□ -0.61
VCL-201ENST00000211998 AGGF1Q8N302 714 aaeCLIP11.22□□□□□ -0.61
VCL-201ENST00000211998 ENAHQ8N8S7 591 aaPredicted RBP11.22□□□□□ -0.61
VCL-201ENST00000211998 SEPT8Q92599 483 aa11.22□□□□□ -0.61
VCL-201ENST00000211998 GRAMD1AQ96CP6 724 aa11.22□□□□□ -0.61
VCL-201ENST00000211998 FOXP1Q9H334 677 aaPredicted RBP11.22□□□□□ -0.61
VCL-201ENST00000211998 PSTPIP2Q9H939 334 aa11.22□□□□□ -0.61
VCL-201ENST00000211998 PBRM1Q86U86 1689 aa11.22□□□□□ -0.61
VCL-201ENST00000211998 SERPINI2O75830 405 aa11.22□□□□□ -0.61
VCL-201ENST00000211998 ANP32DO95626 131 aa11.22□□□□□ -0.61
VCL-201ENST00000211998 KRT8P05787 483 aa11.22□□□□□ -0.61
VCL-201ENST00000211998 TNNI1P19237 187 aa11.22□□□□□ -0.61
VCL-201ENST00000211998 CCNI2Q6ZMN8 369 aaPredicted RBP11.22□□□□□ -0.61
VCL-201ENST00000211998 ARMCX6Q7L4S7 300 aa11.22□□□□□ -0.61
VCL-201ENST00000211998 TRPM8Q7Z2W7 1104 aa11.22□□□□□ -0.61
VCL-201ENST00000211998 GLG1Q92896 1179 aa11.22□□□□□ -0.61
VCL-201ENST00000211998 PAGE5Q96GU1 130 aa11.22□□□□□ -0.61
VCL-201ENST00000211998 KIFC3Q9BVG8 833 aa11.22□□□□□ -0.61
VCL-201ENST00000211998 SUGCTQ9HAC7 445 aa11.22□□□□□ -0.61
VCL-201ENST00000211998 STRIP2Q9ULQ0 834 aa11.22□□□□□ -0.61
VCL-201ENST00000211998 TTLL3Q9Y4R7 772 aa11.22□□□□□ -0.61
VCL-201ENST00000211998 CAND2O75155 1236 aa11.21□□□□□ -0.61
VCL-201ENST00000211998 KCNJ6P48051 423 aa11.21□□□□□ -0.61
VCL-201ENST00000211998 CEP55Q53EZ4 464 aa11.21□□□□□ -0.61
VCL-201ENST00000211998 ARHGEF16Q5VV41 709 aa11.21□□□□□ -0.61
VCL-201ENST00000211998 PPM1KQ8N3J5 372 aa11.21□□□□□ -0.61
VCL-201ENST00000211998 B4GALNT2Q8NHY0 566 aa11.21□□□□□ -0.61
VCL-201ENST00000211998 CNKSR1Q969H4 720 aa11.21□□□□□ -0.61
VCL-201ENST00000211998 USP44Q9H0E7 712 aa11.21□□□□□ -0.61
VCL-201ENST00000211998 MAP3K15Q6ZN16 1313 aa11.21□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms