RNA–Protein interactions for RNA: ENST00000011700.10

VPS13D-201, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 1 (best)

Gene VPS13D, Length 10,969 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-201ENST00000011700 CBX8Q9HC52 389 aa6.51□□□□□ -1.37
VPS13D-201ENST00000011700 PNMA3Q9UL41 463 aa6.51□□□□□ -1.37
VPS13D-201ENST00000011700 ZNF148Q9UQR1 794 aa6.51□□□□□ -1.37
VPS13D-201ENST00000011700 CSADQ9Y600 493 aa6.51□□□□□ -1.37
VPS13D-201ENST00000011700 HIBADHP31937 336 aaKnown RBP6.51□□□□□ -1.37
VPS13D-201ENST00000011700 SGO2Q562F6 1265 aa6.51□□□□□ -1.37
VPS13D-201ENST00000011700 METTL23Q86XA0 190 aa6.51□□□□□ -1.37
VPS13D-201ENST00000011700 DIS3L2Q8IYB7 885 aaKnown RBP6.51□□□□□ -1.37
VPS13D-201ENST00000011700 PPIL4Q8WUA2 492 aaKnown RBP eCLIP6.51□□□□□ -1.37
VPS13D-201ENST00000011700 OSCP1Q8WVF1 389 aa6.51□□□□□ -1.37
VPS13D-201ENST00000011700 SIRT1Q96EB6 747 aa6.51□□□□□ -1.37
VPS13D-201ENST00000011700 INO80BQ9C086 356 aaPredicted RBP6.51□□□□□ -1.37
VPS13D-201ENST00000011700 ZMYND12Q9H0C1 365 aa6.51□□□□□ -1.37
VPS13D-201ENST00000011700 PSTPIP2Q9H939 334 aa6.51□□□□□ -1.37
VPS13D-201ENST00000011700 AP4S1Q9Y587 144 aa6.51□□□□□ -1.37
VPS13D-201ENST00000011700 MYO5BQ9ULV0 1848 aa6.51□□□□□ -1.37
VPS13D-201ENST00000011700 BRAFP15056 766 aa6.51□□□□□ -1.37
VPS13D-201ENST00000011700 DHX34Q14147 1143 aaKnown RBP6.51□□□□□ -1.37
VPS13D-201ENST00000011700 KARSQ15046 597 aaKnown RBP6.51□□□□□ -1.37
VPS13D-201ENST00000011700 FRA10AC1Q70Z53 315 aa6.51□□□□□ -1.37
VPS13D-201ENST00000011700 ARMC2Q8NEN0 867 aa6.51□□□□□ -1.37
VPS13D-201ENST00000011700 TDRD7Q8NHU6 1098 aaKnown RBP6.51□□□□□ -1.37
VPS13D-201ENST00000011700 SPINK5Q9NQ38 1064 aaPredicted RBP6.51□□□□□ -1.37
VPS13D-201ENST00000011700 PANK4Q9NVE7 773 aa6.51□□□□□ -1.37
VPS13D-201ENST00000011700 SNUPNO95149 360 aaKnown RBP6.51□□□□□ -1.37
VPS13D-201ENST00000011700 ESRRAP11474 423 aaPredicted RBP6.51□□□□□ -1.37
VPS13D-201ENST00000011700 NNTQ13423 1086 aa6.51□□□□□ -1.37
VPS13D-201ENST00000011700 TYW1BQ6NUM6 668 aa6.51□□□□□ -1.37
VPS13D-201ENST00000011700 LARP4BQ92615 738 aaKnown RBP6.51□□□□□ -1.37
VPS13D-201ENST00000011700 MBD2Q9UBB5 411 aa6.51□□□□□ -1.37
VPS13D-201ENST00000011700 STK38LQ9Y2H1 464 aa6.51□□□□□ -1.37
VPS13D-201ENST00000011700 BICRAQ9NZM4 1560 aa6.51□□□□□ -1.37
VPS13D-201ENST00000011700 PSMD3O43242 534 aa6.51□□□□□ -1.37
VPS13D-201ENST00000011700 CD19P15391 556 aa6.51□□□□□ -1.37
VPS13D-201ENST00000011700 PCSK2P16519 638 aa6.51□□□□□ -1.37
VPS13D-201ENST00000011700 CWF19L2Q2TBE0 894 aaKnown RBP6.51□□□□□ -1.37
VPS13D-201ENST00000011700 TOGARAM2Q6ZUX3 1019 aa6.51□□□□□ -1.37
VPS13D-201ENST00000011700 DPH6Q7L8W6 267 aa6.51□□□□□ -1.37
VPS13D-201ENST00000011700 KRT28Q7Z3Y7 464 aa6.51□□□□□ -1.37
VPS13D-201ENST00000011700 VPS37AQ8NEZ2 397 aa6.51□□□□□ -1.37
VPS13D-201ENST00000011700 RIN3Q8TB24 985 aa6.51□□□□□ -1.37
VPS13D-201ENST00000011700 KIF17Q9P2E2 1029 aa6.51□□□□□ -1.37
VPS13D-201ENST00000011700 L3MBTL1Q9Y468 752 aa6.51□□□□□ -1.37
VPS13D-201ENST00000011700 DISP3Q9P2K9 1392 aa6.51□□□□□ -1.37
VPS13D-201ENST00000011700 MTSS1O43312 755 aa6.51□□□□□ -1.37
VPS13D-201ENST00000011700 BRD1O95696 1058 aa6.51□□□□□ -1.37
VPS13D-201ENST00000011700 PIK3CAP42336 1068 aa6.51□□□□□ -1.37
VPS13D-201ENST00000011700 STAT2P52630 851 aa6.51□□□□□ -1.37
VPS13D-201ENST00000011700 NAALADL2Q58DX5 795 aa6.51□□□□□ -1.37
VPS13D-201ENST00000011700 COPS6Q7L5N1 327 aa6.51□□□□□ -1.37
VPS13D-201ENST00000011700 DDX56Q9NY93 547 aaKnown RBP6.51□□□□□ -1.37
VPS13D-201ENST00000011700 LMCD1Q9NZU5 365 aa6.51□□□□□ -1.37
VPS13D-201ENST00000011700 IL10P22301 178 aa6.51□□□□□ -1.37
VPS13D-201ENST00000011700 JAK3P52333 1124 aa6.51□□□□□ -1.37
VPS13D-201ENST00000011700 THOC5Q13769 683 aaKnown RBP6.51□□□□□ -1.37
VPS13D-201ENST00000011700 DIXDC1Q155Q3 683 aa6.51□□□□□ -1.37
VPS13D-201ENST00000011700 FBXO18Q8NFZ0 1043 aa6.51□□□□□ -1.37
VPS13D-201ENST00000011700 IP6K1Q92551 441 aa6.51□□□□□ -1.37
VPS13D-201ENST00000011700 KRT35Q92764 455 aa6.51□□□□□ -1.37
VPS13D-201ENST00000011700 SCYL1Q96KG9 808 aa6.51□□□□□ -1.37
VPS13D-201ENST00000011700 RRP15Q9Y3B9 282 aaKnown RBP6.51□□□□□ -1.37
VPS13D-201ENST00000011700 UGGT1Q9NYU2 1555 aa6.51□□□□□ -1.37
VPS13D-201ENST00000011700 SGK1O00141 431 aa6.51□□□□□ -1.37
VPS13D-201ENST00000011700 POLR2MP0CAP2 368 aa6.51□□□□□ -1.37
VPS13D-201ENST00000011700 RASGRF1Q13972 1273 aa6.51□□□□□ -1.37
VPS13D-201ENST00000011700 P3H1Q32P28 736 aa6.51□□□□□ -1.37
VPS13D-201ENST00000011700 LARP7Q4G0J3 582 aaKnown RBP eCLIP6.51□□□□□ -1.37
VPS13D-201ENST00000011700 TRAPPC3LQ5T215 181 aa6.51□□□□□ -1.37
VPS13D-201ENST00000011700 CC2D2BQ6DHV5 1058 aa6.51□□□□□ -1.37
VPS13D-201ENST00000011700 PPP1R13BQ96KQ4 1090 aa6.51□□□□□ -1.37
VPS13D-201ENST00000011700 AMNQ9BXJ7 453 aa6.51□□□□□ -1.37
VPS13D-201ENST00000011700 VPS16Q9H269 839 aa6.51□□□□□ -1.37
VPS13D-201ENST00000011700 NMRK1Q9NWW6 199 aa6.51□□□□□ -1.37
VPS13D-201ENST00000011700 MORC2Q9Y6X9 1032 aaPredicted RBP6.51□□□□□ -1.37
VPS13D-201ENST00000011700 GYG2O15488 501 aa6.5□□□□□ -1.37
VPS13D-201ENST00000011700 KRT14P02533 472 aa6.5□□□□□ -1.37
VPS13D-201ENST00000011700 POLGP54098 1239 aaPredicted RBP6.5□□□□□ -1.37
VPS13D-201ENST00000011700 DNAL1Q4LDG9 190 aa6.5□□□□□ -1.37
VPS13D-201ENST00000011700 POMGNT1Q8WZA1 660 aa6.5□□□□□ -1.37
VPS13D-201ENST00000011700 FGD4Q96M96 766 aa6.5□□□□□ -1.37
VPS13D-201ENST00000011700 SELENONQ9NZV5 590 aa6.5□□□□□ -1.37
VPS13D-201ENST00000011700 AATKQ6ZMQ8 1374 aa6.5□□□□□ -1.37
VPS13D-201ENST00000011700 UBN2Q6ZU65 1347 aa6.5□□□□□ -1.37
VPS13D-201ENST00000011700 PTCH1Q13635 1447 aa6.5□□□□□ -1.37
VPS13D-201ENST00000011700 ANXA11P50995 505 aaKnown RBP6.5□□□□□ -1.37
VPS13D-201ENST00000011700 RAB14P61106 215 aa6.5□□□□□ -1.37
VPS13D-201ENST00000011700 TTC8Q8TAM2 541 aa6.5□□□□□ -1.37
VPS13D-201ENST00000011700 TRIM63Q969Q1 353 aa6.5□□□□□ -1.37
VPS13D-201ENST00000011700 TUBGCP2Q9BSJ2 902 aa6.5□□□□□ -1.37
VPS13D-201ENST00000011700 PARVGQ9HBI0 331 aa6.5□□□□□ -1.37
VPS13D-201ENST00000011700 SYBUQ9NX95 663 aa6.5□□□□□ -1.37
VPS13D-201ENST00000011700 STMN3Q9NZ72 180 aa6.5□□□□□ -1.37
VPS13D-201ENST00000011700 PKD2L2Q9NZM6 624 aa6.5□□□□□ -1.37
VPS13D-201ENST00000011700 ARID1BQ8NFD5 2236 aaPredicted RBP6.5□□□□□ -1.37
VPS13D-201ENST00000011700 ZMYM2Q9UBW7 1377 aa6.5□□□□□ -1.37
VPS13D-201ENST00000011700 MCPH1Q8NEM0 835 aa6.5□□□□□ -1.37
VPS13D-201ENST00000011700 ECT2Q9H8V3 914 aa6.5□□□□□ -1.37
VPS13D-201ENST00000011700 ARAP3Q8WWN8 1544 aa6.5□□□□□ -1.37
VPS13D-201ENST00000011700 STRNO43815 780 aa6.5□□□□□ -1.37
VPS13D-201ENST00000011700 CCDC159P0C7I6 412 aa6.5□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms