RNA–Protein interactions for RNA: ENSMUST00000113440.1

Ccdc88b-201, Transcript of Coiled-coil domain-containing protein 88B, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Ccdc88b, Length 4,959 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc88b-201ENSMUST00000113440 Cmtm5Q9D6G9 156 aa16.84■□□□□ 0.29
Ccdc88b-201ENSMUST00000113440 Ttc38A3KMP2 465 aa16.83■□□□□ 0.29
Ccdc88b-201ENSMUST00000113440 Snx12O70493 165 aa16.83■□□□□ 0.29
Ccdc88b-201ENSMUST00000113440 Pth1rP41593 591 aa16.83■□□□□ 0.29
Ccdc88b-201ENSMUST00000113440 IvlP48997 467 aa16.83■□□□□ 0.29
Ccdc88b-201ENSMUST00000113440 Tcp10aQ80W76 438 aa16.83■□□□□ 0.29
Ccdc88b-201ENSMUST00000113440 Mettl24Q8CCB5 363 aa16.83■□□□□ 0.29
Ccdc88b-201ENSMUST00000113440 Tekt2Q922G7 430 aa16.83■□□□□ 0.29
Ccdc88b-201ENSMUST00000113440 Stat4P42228 749 aa16.83■□□□□ 0.28
Ccdc88b-201ENSMUST00000113440 Psen2Q61144 448 aa16.83■□□□□ 0.28
Ccdc88b-201ENSMUST00000113440 Spata21Q8BHW6 681 aa16.83■□□□□ 0.28
Ccdc88b-201ENSMUST00000113440 Usp15Q8R5H1 981 aa16.83■□□□□ 0.28
Ccdc88b-201ENSMUST00000113440 Trex1Q91XB0 314 aa16.83■□□□□ 0.28
Ccdc88b-201ENSMUST00000113440 PycardQ9EPB4 193 aa16.83■□□□□ 0.28
Ccdc88b-201ENSMUST00000113440 EcsitQ9QZH6 435 aa16.83■□□□□ 0.28
Ccdc88b-201ENSMUST00000113440 Sipa1l1Q8C0T5 1782 aa16.83■□□□□ 0.28
Ccdc88b-201ENSMUST00000113440 Slit2Q9R1B9 1521 aa16.83■□□□□ 0.28
Ccdc88b-201ENSMUST00000113440 Apol11aE9PZG0 334 aa16.83■□□□□ 0.28
Ccdc88b-201ENSMUST00000113440 Ripply1Q2WG77 201 aa16.83■□□□□ 0.28
Ccdc88b-201ENSMUST00000113440 Mrps31Q61733 384 aaKnown RBP16.83■□□□□ 0.28
Ccdc88b-201ENSMUST00000113440 Slc26a7Q8R2Z3 656 aa16.83■□□□□ 0.28
Ccdc88b-201ENSMUST00000113440 Apbb1ipQ8R5A3 670 aa16.83■□□□□ 0.28
Ccdc88b-201ENSMUST00000113440 Sec63Q8VHE0 760 aaKnown RBP16.83■□□□□ 0.28
Ccdc88b-201ENSMUST00000113440 Slc44a4Q91VA1 707 aa16.83■□□□□ 0.28
Ccdc88b-201ENSMUST00000113440 IdeQ9JHR7 1019 aa16.83■□□□□ 0.28
Ccdc88b-201ENSMUST00000113440 S100bP50114 92 aa16.82■□□□□ 0.28
Ccdc88b-201ENSMUST00000113440 Rhbdl3P58873 404 aa16.82■□□□□ 0.28
Ccdc88b-201ENSMUST00000113440 Vsnl1P62761 191 aa16.82■□□□□ 0.28
Ccdc88b-201ENSMUST00000113440 Styxl1Q9DAR2 321 aa16.82■□□□□ 0.28
Ccdc88b-201ENSMUST00000113440 Add1Q9QYC0 735 aaKnown RBP16.82■□□□□ 0.28
Ccdc88b-201ENSMUST00000113440 Itsn1Q9Z0R4 1714 aa16.82■□□□□ 0.28
Ccdc88b-201ENSMUST00000113440 1700003F12RikA2AKE5 210 aa16.82■□□□□ 0.28
Ccdc88b-201ENSMUST00000113440 Stim2P83093 746 aa16.82■□□□□ 0.28
Ccdc88b-201ENSMUST00000113440 Skap2Q3UND0 358 aa16.82■□□□□ 0.28
Ccdc88b-201ENSMUST00000113440 Stk38lQ7TSE6 464 aa16.82■□□□□ 0.28
Ccdc88b-201ENSMUST00000113440 Cracr2bQ80ZJ8 394 aa16.82■□□□□ 0.28
Ccdc88b-201ENSMUST00000113440 Dppa3Q8QZY3 150 aa16.82■□□□□ 0.28
Ccdc88b-201ENSMUST00000113440 MlxiplQ99MZ3 864 aa16.82■□□□□ 0.28
Ccdc88b-201ENSMUST00000113440 Arhgef7Q9ES28 862 aa16.82■□□□□ 0.28
Ccdc88b-201ENSMUST00000113440 Rimbp3Q3V0F0 1606 aa16.82■□□□□ 0.28
Ccdc88b-201ENSMUST00000113440 Camta1A2A891 1682 aa16.82■□□□□ 0.28
Ccdc88b-201ENSMUST00000113440 Zc3h7bF8VPP8 982 aaKnown RBP16.82■□□□□ 0.28
Ccdc88b-201ENSMUST00000113440 Eif3cQ8R1B4 911 aaKnown RBP16.82■□□□□ 0.28
Ccdc88b-201ENSMUST00000113440 Atxn7Q8R4I1 867 aa16.82■□□□□ 0.28
Ccdc88b-201ENSMUST00000113440 Washc1Q8VDD8 475 aa16.82■□□□□ 0.28
Ccdc88b-201ENSMUST00000113440 Scyl1Q9EQC5 806 aaKnown RBP16.82■□□□□ 0.28
Ccdc88b-201ENSMUST00000113440 NsfP46460 744 aa16.82■□□□□ 0.28
Ccdc88b-201ENSMUST00000113440 Kctd16Q5DTY9 427 aa16.82■□□□□ 0.28
Ccdc88b-201ENSMUST00000113440 Acat1Q8QZT1 424 aa16.82■□□□□ 0.28
Ccdc88b-201ENSMUST00000113440 PdhbQ9D051 359 aa16.82■□□□□ 0.28
Ccdc88b-201ENSMUST00000113440 Cdc25aP48964 514 aa16.81■□□□□ 0.28
Ccdc88b-201ENSMUST00000113440 Esyt2Q3TZZ7 845 aa16.81■□□□□ 0.28
Ccdc88b-201ENSMUST00000113440 Nr1d1Q3UV55 615 aa16.81■□□□□ 0.28
Ccdc88b-201ENSMUST00000113440 Asnsd1Q8BFS9 627 aa16.81■□□□□ 0.28
Ccdc88b-201ENSMUST00000113440 Zfand4D3Z3C6 739 aa16.81■□□□□ 0.28
Ccdc88b-201ENSMUST00000113440 Tnnc2P20801 160 aa16.81■□□□□ 0.28
Ccdc88b-201ENSMUST00000113440 GabpaQ00422 454 aa16.81■□□□□ 0.28
Ccdc88b-201ENSMUST00000113440 Luc7l3Q5SUF2 432 aaKnown RBP16.81■□□□□ 0.28
Ccdc88b-201ENSMUST00000113440 Tlr13Q6R5N8 991 aa16.81■□□□□ 0.28
Ccdc88b-201ENSMUST00000113440 Nacc1Q7TSZ8 514 aa16.81■□□□□ 0.28
Ccdc88b-201ENSMUST00000113440 Znf365Q8BG89 408 aa16.81■□□□□ 0.28
Ccdc88b-201ENSMUST00000113440 OscarQ8VBT3 265 aa16.81■□□□□ 0.28
Ccdc88b-201ENSMUST00000113440 Flt1P35969 1333 aa16.81■□□□□ 0.28
Ccdc88b-201ENSMUST00000113440 Gm43738A0A0G2JEA5 862 aa16.81■□□□□ 0.28
Ccdc88b-201ENSMUST00000113440 Pik3r1P26450 724 aa16.81■□□□□ 0.28
Ccdc88b-201ENSMUST00000113440 Ahcyl2Q68FL4 613 aaKnown RBP16.81■□□□□ 0.28
Ccdc88b-201ENSMUST00000113440 Smarca1Q6PGB8 1046 aa16.81■□□□□ 0.28
Ccdc88b-201ENSMUST00000113440 Lca5Q80ST9 704 aa16.81■□□□□ 0.28
Ccdc88b-201ENSMUST00000113440 Grtp1Q9D3N8 359 aa16.81■□□□□ 0.28
Ccdc88b-201ENSMUST00000113440 Syap1Q9D5V6 365 aa16.81■□□□□ 0.28
Ccdc88b-201ENSMUST00000113440 4931408C20RikE9PWP9 1381 aa16.81■□□□□ 0.28
Ccdc88b-201ENSMUST00000113440 Nedd9O35177 833 aa16.81■□□□□ 0.28
Ccdc88b-201ENSMUST00000113440 Zfyve27Q3TXX3 415 aa16.81■□□□□ 0.28
Ccdc88b-201ENSMUST00000113440 Sh3gl1Q62419 368 aa16.81■□□□□ 0.28
Ccdc88b-201ENSMUST00000113440 Gtpbp10Q8K013 366 aa16.81■□□□□ 0.28
Ccdc88b-201ENSMUST00000113440 Scrn1Q9CZC8 414 aa16.81■□□□□ 0.28
Ccdc88b-201ENSMUST00000113440 Calr3Q9D9Q6 380 aa16.81■□□□□ 0.28
Ccdc88b-201ENSMUST00000113440 DccP70211 1447 aa16.81■□□□□ 0.28
Ccdc88b-201ENSMUST00000113440 Ccdc13D3YV10 709 aa16.8■□□□□ 0.28
Ccdc88b-201ENSMUST00000113440 Tal1P22091 329 aa16.8■□□□□ 0.28
Ccdc88b-201ENSMUST00000113440 Tmem232Q5K6N0 675 aa16.8■□□□□ 0.28
Ccdc88b-201ENSMUST00000113440 Acbd5Q5XG73 508 aa16.8■□□□□ 0.28
Ccdc88b-201ENSMUST00000113440 Gprasp2Q8BUY8 826 aa16.8■□□□□ 0.28
Ccdc88b-201ENSMUST00000113440 Ssx2ipQ8VC66 615 aa16.8■□□□□ 0.28
Ccdc88b-201ENSMUST00000113440 MefvQ9JJ26 767 aa16.8■□□□□ 0.28
Ccdc88b-201ENSMUST00000113440 Ssc5dQ8BV57 1371 aa16.8■□□□□ 0.28
Ccdc88b-201ENSMUST00000113440 Nrxn3Q6P9K9 1571 aa16.8■□□□□ 0.28
Ccdc88b-201ENSMUST00000113440 Heatr4E9Q357 955 aa16.8■□□□□ 0.28
Ccdc88b-201ENSMUST00000113440 Gimap9G3X987 291 aa16.8■□□□□ 0.28
Ccdc88b-201ENSMUST00000113440 YwhaeP62259 255 aaKnown RBP16.8■□□□□ 0.28
Ccdc88b-201ENSMUST00000113440 Sv2cQ69ZS6 727 aa16.8■□□□□ 0.28
Ccdc88b-201ENSMUST00000113440 Cep104Q80V31 926 aa16.8■□□□□ 0.28
Ccdc88b-201ENSMUST00000113440 Fam133bQ9CVI2 245 aaKnown RBP16.8■□□□□ 0.28
Ccdc88b-201ENSMUST00000113440 Sall1Q9ER74 1322 aa16.8■□□□□ 0.28
Ccdc88b-201ENSMUST00000113440 C87977A2A958 498 aa16.8■□□□□ 0.28
Ccdc88b-201ENSMUST00000113440 Kcna1P16388 495 aa16.8■□□□□ 0.28
Ccdc88b-201ENSMUST00000113440 Atp8a1P70704 1164 aa16.8■□□□□ 0.28
Ccdc88b-201ENSMUST00000113440 Trpc6Q61143 930 aa16.8■□□□□ 0.28
Ccdc88b-201ENSMUST00000113440 Stxbp2Q64324 593 aa16.8■□□□□ 0.28
Ccdc88b-201ENSMUST00000113440 Tlr11Q6R5P0 926 aa16.8■□□□□ 0.28
Retrieved 100 of 22,080 RNA–protein pairs in 25.2 ms