RNA–Protein interactions for RNA: YNL197C

WHI3, Transcript of RNA binding protein that sequesters CLN3 mRNA in cytoplasmic foci, yeast

Gene WHI3, Length 1,986 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
WHI3	YNL197C	PHB2	P50085	310 aa		3.21	□□□□□ -1.9
WHI3	YNL197C	PIB2	P53191	635 aa		3.21	□□□□□ -1.9
WHI3	YNL197C	ERP1	Q05359	219 aa	Known RBP	3.21	□□□□□ -1.9
WHI3	YNL197C	SGT1	Q08446	395 aa		3.21	□□□□□ -1.9
WHI3	YNL197C	AYT1	Q12226	474 aa		3.21	□□□□□ -1.9
WHI3	YNL197C	CYB2	P00175	591 aa		3.2	□□□□□ -1.9
WHI3	YNL197C	HEM2	P05373	342 aa		3.2	□□□□□ -1.9
WHI3	YNL197C	YAR066W	P0CX18	203 aa		3.2	□□□□□ -1.9
WHI3	YNL197C	YHR214W	P0CX19	203 aa		3.2	□□□□□ -1.9
WHI3	YNL197C	MST28	P39552	234 aa		3.2	□□□□□ -1.9
WHI3	YNL197C	SIM1	P40472	476 aa		3.2	□□□□□ -1.9
WHI3	YNL197C	ASN2	P49090	572 aa	Known RBP	3.2	□□□□□ -1.9
WHI3	YNL197C	RSN1	Q03516	953 aa		3.2	□□□□□ -1.9
WHI3	YNL197C	CDC21	P06785	304 aa		3.2	□□□□□ -1.9
WHI3	YNL197C	RPL12A	P0CX53	165 aa	Known RBP	3.2	□□□□□ -1.9
WHI3	YNL197C	RPL12B	P0CX54	165 aa		3.2	□□□□□ -1.9
WHI3	YNL197C	PRP16	P15938	1071 aa	Predicted RBP	3.2	□□□□□ -1.9
WHI3	YNL197C	RSM22	P36056	628 aa		3.2	□□□□□ -1.9
WHI3	YNL197C	SPP381	P38282	291 aa	Predicted RBP	3.2	□□□□□ -1.9
WHI3	YNL197C	YER079W	P40052	210 aa	Known RBP	3.2	□□□□□ -1.9
WHI3	YNL197C	CUE3	P53137	624 aa	Known RBP	3.2	□□□□□ -1.9
WHI3	YNL197C	MRP51	Q02950	344 aa		3.2	□□□□□ -1.9
WHI3	YNL197C	NUP53	Q03790	475 aa		3.2	□□□□□ -1.9
WHI3	YNL197C	URC2	Q04411	772 aa		3.2	□□□□□ -1.9
WHI3	YNL197C	ECM7	Q06200	448 aa		3.2	□□□□□ -1.9
WHI3	YNL197C	RRP9	Q06506	573 aa	Known RBP	3.2	□□□□□ -1.9
WHI3	YNL197C	SRN2	Q99176	213 aa		3.2	□□□□□ -1.9
WHI3	YNL197C	RDS1	P25611	832 aa		3.19	□□□□□ -1.9
WHI3	YNL197C	RGT1	P32862	1170 aa		3.19	□□□□□ -1.9
WHI3	YNL197C	MSG5	P38590	489 aa		3.19	□□□□□ -1.9
WHI3	YNL197C	RRF1	P38771	230 aa		3.19	□□□□□ -1.9
WHI3	YNL197C	BZZ1	P38822	633 aa		3.19	□□□□□ -1.9
WHI3	YNL197C	PAC11	P40960	533 aa		3.19	□□□□□ -1.9
WHI3	YNL197C	COS10	P52924	374 aa		3.19	□□□□□ -1.9
WHI3	YNL197C	PIR3	Q03180	325 aa		3.19	□□□□□ -1.9
WHI3	YNL197C	REX4	Q08237	289 aa		3.19	□□□□□ -1.9
WHI3	YNL197C	TIM18	Q08749	192 aa		3.19	□□□□□ -1.9
WHI3	YNL197C	DAP1	Q12091	152 aa		3.19	□□□□□ -1.9
WHI3	YNL197C	TEF1	P02994	458 aa	Known RBP	3.18	□□□□□ -1.9
WHI3	YNL197C	ATR1	P13090	542 aa		3.18	□□□□□ -1.9
WHI3	YNL197C	MTF1	P14908	341 aa	Known RBP	3.18	□□□□□ -1.9
WHI3	YNL197C	PUT3	P25502	979 aa	Predicted RBP	3.18	□□□□□ -1.9
WHI3	YNL197C	PMU1	P36069	295 aa		3.18	□□□□□ -1.9
WHI3	YNL197C	YBR137W	P38276	179 aa		3.18	□□□□□ -1.9
WHI3	YNL197C	ALG8	P40351	577 aa		3.18	□□□□□ -1.9
WHI3	YNL197C	YJL070C	P40361	888 aa		3.18	□□□□□ -1.9
WHI3	YNL197C	BRO1	P48582	844 aa		3.18	□□□□□ -1.9
WHI3	YNL197C	POP6	P53218	158 aa		3.18	□□□□□ -1.9
WHI3	YNL197C	STD1	Q02794	444 aa		3.18	□□□□□ -1.9
WHI3	YNL197C	YPR078C	Q06813	372 aa		3.18	□□□□□ -1.9
WHI3	YNL197C	PKH2	Q12236	1081 aa	Known RBP	3.18	□□□□□ -1.9
WHI3	YNL197C	ARG4	P04076	463 aa	Predicted RBP	3.18	□□□□□ -1.9
WHI3	YNL197C	OPI3	P05375	206 aa		3.18	□□□□□ -1.9
WHI3	YNL197C	DST1	P07273	309 aa		3.18	□□□□□ -1.9
WHI3	YNL197C	TAL1	P15019	335 aa	Known RBP	3.18	□□□□□ -1.9
WHI3	YNL197C	DAL5	P15365	543 aa		3.18	□□□□□ -1.9
WHI3	YNL197C	PSO2	P30620	661 aa		3.18	□□□□□ -1.9
WHI3	YNL197C	RPH1	P39956	796 aa		3.18	□□□□□ -1.9
WHI3	YNL197C	YFR016C	P43597	1233 aa	Known RBP	3.18	□□□□□ -1.9
WHI3	YNL197C	MPS2	P53159	387 aa		3.18	□□□□□ -1.9
WHI3	YNL197C	RTT102	P53330	157 aa		3.18	□□□□□ -1.9
WHI3	YNL197C	AQR1	P53943	586 aa		3.18	□□□□□ -1.9
WHI3	YNL197C	MMT1	Q03218	510 aa		3.18	□□□□□ -1.9
WHI3	YNL197C	PRP3	Q03338	469 aa	Predicted RBP	3.18	□□□□□ -1.9
WHI3	YNL197C	YAP7	Q08182	245 aa		3.18	□□□□□ -1.9
WHI3	YNL197C	RAD61	Q99359	647 aa		3.18	□□□□□ -1.9
WHI3	YNL197C	STE3	P06783	470 aa		3.17	□□□□□ -1.9
WHI3	YNL197C	RPL20A	P0CX23	172 aa	Known RBP	3.17	□□□□□ -1.9
WHI3	YNL197C	RPL20B	P0CX24	172 aa	Predicted RBP	3.17	□□□□□ -1.9
WHI3	YNL197C	SAM1	P10659	382 aa	Known RBP	3.17	□□□□□ -1.9
WHI3	YNL197C	SAM2	P19358	384 aa	Known RBP	3.17	□□□□□ -1.9
WHI3	YNL197C	TOA2	P32774	122 aa		3.17	□□□□□ -1.9
WHI3	YNL197C	SKN1	P33336	771 aa		3.17	□□□□□ -1.9
WHI3	YNL197C	FAA2	P39518	744 aa		3.17	□□□□□ -1.9
WHI3	YNL197C	YOR012W	Q12351	137 aa		3.17	□□□□□ -1.9
WHI3	YNL197C	NBL1	Q3E7Y6	73 aa		3.17	□□□□□ -1.9
WHI3	YNL197C	PTK1	P36002	662 aa	Predicted RBP	3.16	□□□□□ -1.9
WHI3	YNL197C	LAM5	P43560	674 aa		3.16	□□□□□ -1.9
WHI3	YNL197C	RPA34	P47006	233 aa	Predicted RBP	3.16	□□□□□ -1.9
WHI3	YNL197C	STE24	P47154	453 aa		3.16	□□□□□ -1.9
WHI3	YNL197C	COS1	P53822	381 aa		3.16	□□□□□ -1.9
WHI3	YNL197C	BET5	Q03630	159 aa		3.16	□□□□□ -1.9
WHI3	YNL197C	SET6	Q12529	373 aa		3.16	□□□□□ -1.9
WHI3	YNL197C	SAG1	P20840	650 aa		3.16	□□□□□ -1.9
WHI3	YNL197C	PCH2	P38126	564 aa		3.16	□□□□□ -1.9
WHI3	YNL197C	MIX23	P38162	196 aa		3.16	□□□□□ -1.9
WHI3	YNL197C	SSN8	P47821	323 aa		3.16	□□□□□ -1.9
WHI3	YNL197C	YDL186W	P48568	277 aa		3.16	□□□□□ -1.9
WHI3	YNL197C	RRN9	P53437	365 aa		3.16	□□□□□ -1.9
WHI3	YNL197C	MPS1	P54199	764 aa		3.16	□□□□□ -1.9
WHI3	YNL197C	HXT11	P54862	567 aa		3.16	□□□□□ -1.9
WHI3	YNL197C	MGR3	Q04472	501 aa		3.16	□□□□□ -1.9
WHI3	YNL197C	SPH1	Q06160	661 aa		3.16	□□□□□ -1.9
WHI3	YNL197C	RRP12	Q12754	1228 aa	Known RBP	3.16	□□□□□ -1.9
WHI3	YNL197C	STF1	P01098	86 aa		3.15	□□□□□ -1.91
WHI3	YNL197C	SUR1	P33300	382 aa		3.15	□□□□□ -1.91
WHI3	YNL197C	KAP104	P38217	918 aa	Known RBP	3.15	□□□□□ -1.91
WHI3	YNL197C	OSW5	P40219	148 aa		3.15	□□□□□ -1.91
WHI3	YNL197C	YIL089W	P40500	205 aa		3.15	□□□□□ -1.91
WHI3	YNL197C	CAF40	P53829	373 aa		3.15	□□□□□ -1.91

Retrieved 100 of 5,963 RNA–protein pairs in 24.2 ms