RNA–Protein interactions for RNA: ENST00000637871.1

CLN3-263, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,606 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-263ENST00000637871 CCT6AP40227 531 aaKnown RBP20.43■□□□□ 0.86
CLN3-263ENST00000637871 SNAP25P60880 206 aa20.43■□□□□ 0.86
CLN3-263ENST00000637871 MCM6Q14566 821 aa20.43■□□□□ 0.86
CLN3-263ENST00000637871 POTEEQ6S8J3 1075 aa20.43■□□□□ 0.86
CLN3-263ENST00000637871 TSKSQ9UJT2 592 aa20.43■□□□□ 0.86
CLN3-263ENST00000637871 COL11A1P12107 1806 aaPredicted RBP20.43■□□□□ 0.86
CLN3-263ENST00000637871 POTEMA6NI47 508 aa20.42■□□□□ 0.86
CLN3-263ENST00000637871 MYMKA6NI61 221 aa20.42■□□□□ 0.86
CLN3-263ENST00000637871 TRPA1O75762 1119 aa20.42■□□□□ 0.86
CLN3-263ENST00000637871 RBL2Q08999 1139 aa20.42■□□□□ 0.86
CLN3-263ENST00000637871 CRHR2Q13324 411 aa20.42■□□□□ 0.86
CLN3-263ENST00000637871 IRF2BP1Q8IU81 584 aa20.42■□□□□ 0.86
CLN3-263ENST00000637871 SAMD3Q8N6K7 520 aa20.42■□□□□ 0.86
CLN3-263ENST00000637871 KIFC2Q96AC6 838 aa20.42■□□□□ 0.86
CLN3-263ENST00000637871 ATG4CQ96DT6 458 aa20.42■□□□□ 0.86
CLN3-263ENST00000637871 RANBP17Q9H2T7 1088 aaKnown RBP20.42■□□□□ 0.86
CLN3-263ENST00000637871 RNF186Q9NXI6 227 aa20.42■□□□□ 0.86
CLN3-263ENST00000637871 PPP2R2CQ9Y2T4 447 aa20.42■□□□□ 0.86
CLN3-263ENST00000637871 SPDYE16A6NNV3 312 aaPredicted RBP20.42■□□□□ 0.86
CLN3-263ENST00000637871 RRP9O43818 475 aaKnown RBP20.42■□□□□ 0.86
CLN3-263ENST00000637871 TBC1D8O95759 1140 aa20.42■□□□□ 0.86
CLN3-263ENST00000637871 ADKP55263 362 aaKnown RBP20.42■□□□□ 0.86
CLN3-263ENST00000637871 UBXN1Q04323 297 aa20.42■□□□□ 0.86
CLN3-263ENST00000637871 EHHADHQ08426 723 aa20.42■□□□□ 0.86
CLN3-263ENST00000637871 STK4Q13043 487 aa20.42■□□□□ 0.86
CLN3-263ENST00000637871 MB21D1Q8N884 522 aa20.42■□□□□ 0.86
CLN3-263ENST00000637871 TSG101Q99816 390 aa20.42■□□□□ 0.86
CLN3-263ENST00000637871 VPS16Q9H269 839 aa20.42■□□□□ 0.86
CLN3-263ENST00000637871 A0A0G2JMZ2 1700 aa20.41■□□□□ 0.86
CLN3-263ENST00000637871 CCDC175P0C221 793 aa20.41■□□□□ 0.86
CLN3-263ENST00000637871 MUTP22033 750 aa20.41■□□□□ 0.86
CLN3-263ENST00000637871 OSBPP22059 807 aa20.41■□□□□ 0.86
CLN3-263ENST00000637871 HERVK_113P62684 666 aa20.41■□□□□ 0.86
CLN3-263ENST00000637871 PABPC4Q13310 644 aaKnown RBP eCLIP20.41■□□□□ 0.863e-6■■■■□ 26.6
CLN3-263ENST00000637871 REXO1L1PQ8IX06 675 aa20.41■□□□□ 0.86
CLN3-263ENST00000637871 CCDC65Q8IXS2 484 aa20.41■□□□□ 0.86
CLN3-263ENST00000637871 ETNPPLQ8TBG4 499 aa20.41■□□□□ 0.86
CLN3-263ENST00000637871 SMCR8Q8TEV9 937 aaPredicted RBP20.41■□□□□ 0.86
CLN3-263ENST00000637871 DDX12PQ92771 950 aa20.41■□□□□ 0.86
CLN3-263ENST00000637871 PARK7Q99497 189 aaKnown RBP20.41■□□□□ 0.86
CLN3-263ENST00000637871 DUSP9Q99956 384 aaKnown RBP20.41■□□□□ 0.86
CLN3-263ENST00000637871 SLF1Q9BQI6 1058 aa20.41■□□□□ 0.86
CLN3-263ENST00000637871 TAB2Q9NYJ8 693 aa20.41■□□□□ 0.86
CLN3-263ENST00000637871 MAPK8IP1Q9UQF2 711 aa20.41■□□□□ 0.86
CLN3-263ENST00000637871 SLC45A1Q9Y2W3 748 aa20.41■□□□□ 0.86
CLN3-263ENST00000637871 ECM2O94769 699 aaPredicted RBP20.4■□□□□ 0.86
CLN3-263ENST00000637871 TAL1P17542 331 aaPredicted RBP20.4■□□□□ 0.86
CLN3-263ENST00000637871 TSR1Q2NL82 804 aaKnown RBP20.4■□□□□ 0.86
CLN3-263ENST00000637871 ZNF507Q8TCN5 953 aa20.4■□□□□ 0.86
CLN3-263ENST00000637871 ZNF592Q92610 1267 aa20.4■□□□□ 0.86
CLN3-263ENST00000637871 PAGR1Q9BTK6 254 aa20.4■□□□□ 0.86
CLN3-263ENST00000637871 CPA4Q9UI42 421 aa20.4■□□□□ 0.86
CLN3-263ENST00000637871 PNMA3Q9UL41 463 aa20.4■□□□□ 0.86
CLN3-263ENST00000637871 PPP1R9AQ9ULJ8 1098 aa20.4■□□□□ 0.86
CLN3-263ENST00000637871 MYH7BA7E2Y1 1941 aa20.4■□□□□ 0.86
CLN3-263ENST00000637871 ADGRA2Q96PE1 1338 aa20.39■□□□□ 0.86
CLN3-263ENST00000637871 GCOM1H8Y6P7 765 aaPredicted RBP20.39■□□□□ 0.86
CLN3-263ENST00000637871 POLR2MP0CAP2 368 aa20.39■□□□□ 0.86
CLN3-263ENST00000637871 RPA1P27694 616 aa20.39■□□□□ 0.86
CLN3-263ENST00000637871 DSG3P32926 999 aa20.39■□□□□ 0.86
CLN3-263ENST00000637871 COG2Q14746 738 aa20.39■□□□□ 0.86
CLN3-263ENST00000637871 FIGNQ5HY92 759 aa20.39■□□□□ 0.86
CLN3-263ENST00000637871 ANKRD40Q6AI12 368 aa20.39■□□□□ 0.86
CLN3-263ENST00000637871 REM2Q8IYK8 340 aaPredicted RBP20.39■□□□□ 0.86
CLN3-263ENST00000637871 TUBGCP2Q9BSJ2 902 aa20.39■□□□□ 0.86
CLN3-263ENST00000637871 L2HGDHQ9H9P8 463 aa20.39■□□□□ 0.86
CLN3-263ENST00000637871 TXNRD2Q9NNW7 524 aa20.39■□□□□ 0.86
CLN3-263ENST00000637871 TRIM49BA6NDI0 452 aa20.38■□□□□ 0.85
CLN3-263ENST00000637871 GYPCP04921 128 aa20.38■□□□□ 0.85
CLN3-263ENST00000637871 USH1GQ495M9 461 aa20.38■□□□□ 0.85
CLN3-263ENST00000637871 CYP26C1Q6V0L0 522 aa20.38■□□□□ 0.85
CLN3-263ENST00000637871 KIAA0895Q8NCT3 520 aa20.38■□□□□ 0.85
CLN3-263ENST00000637871 MAP3K20Q9NYL2 800 aaKnown RBP20.38■□□□□ 0.85
CLN3-263ENST00000637871 ZSWIM8A7E2V4 1837 aa20.38■□□□□ 0.85
CLN3-263ENST00000637871 CA12O43570 354 aa20.38■□□□□ 0.85
CLN3-263ENST00000637871 CASP14P31944 242 aa20.38■□□□□ 0.85
CLN3-263ENST00000637871 ZNF76P36508 570 aa20.38■□□□□ 0.85
CLN3-263ENST00000637871 PMS1P54277 932 aaKnown RBP20.38■□□□□ 0.85
CLN3-263ENST00000637871 MAP2K1Q02750 393 aaPredicted RBP20.38■□□□□ 0.85
CLN3-263ENST00000637871 PRR16Q569H4 304 aa20.38■□□□□ 0.85
CLN3-263ENST00000637871 FKBP15Q5T1M5 1219 aa20.38■□□□□ 0.85
CLN3-263ENST00000637871 ANKRD13CQ8N6S4 541 aa20.38■□□□□ 0.85
CLN3-263ENST00000637871 DNAJC19Q96DA6 116 aa20.38■□□□□ 0.85
CLN3-263ENST00000637871 NUDT12Q9BQG2 462 aa20.38■□□□□ 0.85
CLN3-263ENST00000637871 POLR3CQ9BUI4 534 aaPredicted RBP20.38■□□□□ 0.85
CLN3-263ENST00000637871 ZCCHC17Q9NP64 241 aaKnown RBP20.38■□□□□ 0.85
CLN3-263ENST00000637871 BTBD7Q9P203 1132 aa20.38■□□□□ 0.85
CLN3-263ENST00000637871 DNM3Q9UQ16 869 aa20.38■□□□□ 0.85
CLN3-263ENST00000637871 CNMDO75829 334 aa20.37■□□□□ 0.85
CLN3-263ENST00000637871 PLA2G4BP0C869 781 aa20.37■□□□□ 0.85
CLN3-263ENST00000637871 FDX1P10109 184 aa20.37■□□□□ 0.85
CLN3-263ENST00000637871 MYOCDQ8IZQ8 938 aa20.37■□□□□ 0.85
CLN3-263ENST00000637871 OR8K1Q8NGG5 319 aa20.37■□□□□ 0.85
CLN3-263ENST00000637871 ERO1AQ96HE7 468 aa20.37■□□□□ 0.85
CLN3-263ENST00000637871 ERGIC2Q96RQ1 377 aa20.37■□□□□ 0.85
CLN3-263ENST00000637871 PDCL3Q9H2J4 239 aa20.37■□□□□ 0.85
CLN3-263ENST00000637871 ZFYVE28Q9HCC9 887 aa20.37■□□□□ 0.85
CLN3-263ENST00000637871 PANK4Q9NVE7 773 aa20.37■□□□□ 0.85
CLN3-263ENST00000637871 WBP1LQ9NX94 342 aa20.37■□□□□ 0.85
CLN3-263ENST00000637871 CAPN11Q9UMQ6 739 aa20.37■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms