RNA–Protein interactions for RNA: ENST00000636907.1

CLN3-252, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,679 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-252ENST00000636907 COBLO75128 1261 aa18.81■□□□□ 0.6
CLN3-252ENST00000636907 IDEP14735 1019 aa18.81■□□□□ 0.6
CLN3-252ENST00000636907 ZNF18P17022 549 aa18.81■□□□□ 0.6
CLN3-252ENST00000636907 CDC25BP30305 580 aa18.81■□□□□ 0.6
CLN3-252ENST00000636907 COPB2P35606 906 aa18.81■□□□□ 0.6
CLN3-252ENST00000636907 IWS1Q96ST2 819 aa18.81■□□□□ 0.6
CLN3-252ENST00000636907 SAMSN1Q9NSI8 373 aaKnown RBP18.81■□□□□ 0.6
CLN3-252ENST00000636907 NPHP3-ACAD11A0A0J9YXS1 232 aa18.8■□□□□ 0.6
CLN3-252ENST00000636907 POTEB2H3BUK9 544 aa18.8■□□□□ 0.6
CLN3-252ENST00000636907 MAFGO15525 162 aa18.8■□□□□ 0.6
CLN3-252ENST00000636907 STAM2O75886 525 aa18.8■□□□□ 0.6
CLN3-252ENST00000636907 EYA4O95677 639 aa18.8■□□□□ 0.6
CLN3-252ENST00000636907 ZBTB48P10074 688 aaPredicted RBP18.8■□□□□ 0.6
CLN3-252ENST00000636907 MUTP22033 750 aa18.8■□□□□ 0.6
CLN3-252ENST00000636907 ALDH5A1P51649 535 aaPredicted RBP18.8■□□□□ 0.6
CLN3-252ENST00000636907 ERVK-9P63128 1117 aa18.8■□□□□ 0.6
CLN3-252ENST00000636907 ERVK-24P63145 666 aa18.8■□□□□ 0.6
CLN3-252ENST00000636907 EHHADHQ08426 723 aa18.8■□□□□ 0.6
CLN3-252ENST00000636907 HS1BP3Q53T59 392 aa18.8■□□□□ 0.6
CLN3-252ENST00000636907 HSP90AA4PQ58FG1 418 aa18.8■□□□□ 0.6
CLN3-252ENST00000636907 ARSHQ5FYA8 562 aa18.8■□□□□ 0.6
CLN3-252ENST00000636907 DHX30Q7L2E3 1194 aaKnown RBP eCLIP18.8■□□□□ 0.6
CLN3-252ENST00000636907 KIAA0895Q8NCT3 520 aa18.8■□□□□ 0.6
CLN3-252ENST00000636907 BANK1Q8NDB2 785 aa18.8■□□□□ 0.6
CLN3-252ENST00000636907 PIGOQ8TEQ8 1089 aa18.8■□□□□ 0.6
CLN3-252ENST00000636907 GTPBP4Q9BZE4 634 aaKnown RBP18.8■□□□□ 0.6
CLN3-252ENST00000636907 XPO4Q9C0E2 1151 aaKnown RBP18.8■□□□□ 0.6
CLN3-252ENST00000636907 IFNKQ9P0W0 207 aa18.8■□□□□ 0.6
CLN3-252ENST00000636907 WRAP73Q9P2S5 460 aaPredicted RBP18.8■□□□□ 0.6
CLN3-252ENST00000636907 SLC45A1Q9Y2W3 748 aa18.8■□□□□ 0.6
CLN3-252ENST00000636907 SOWAHBA6NEL2 793 aa18.79■□□□□ 0.6
CLN3-252ENST00000636907 FSTL1Q12841 308 aa18.79■□□□□ 0.6
CLN3-252ENST00000636907 STIM1Q13586 685 aa18.79■□□□□ 0.6
CLN3-252ENST00000636907 ANKRD23Q86SG2 305 aa18.79■□□□□ 0.6
CLN3-252ENST00000636907 NEK9Q8TD19 979 aa18.79■□□□□ 0.6
CLN3-252ENST00000636907 LXNQ9BS40 222 aa18.79■□□□□ 0.6
CLN3-252ENST00000636907 BHMT2Q9H2M3 363 aa18.79■□□□□ 0.6
CLN3-252ENST00000636907 SLC39A2Q9NP94 309 aa18.79■□□□□ 0.6
CLN3-252ENST00000636907 KRT18P05783 430 aaKnown RBP18.79■□□□□ 0.6
CLN3-252ENST00000636907 CACNB1Q02641 598 aaPredicted RBP18.79■□□□□ 0.6
CLN3-252ENST00000636907 COASYQ13057 564 aa18.79■□□□□ 0.6
CLN3-252ENST00000636907 COBLL1Q53SF7 1204 aa18.79■□□□□ 0.6
CLN3-252ENST00000636907 DRC7Q8IY82 874 aa18.79■□□□□ 0.6
CLN3-252ENST00000636907 FAM133AQ8N9E0 248 aa18.79■□□□□ 0.6
CLN3-252ENST00000636907 SMCR8Q8TEV9 937 aaPredicted RBP18.79■□□□□ 0.6
CLN3-252ENST00000636907 GTF3C2Q8WUA4 911 aaPredicted RBP18.79■□□□□ 0.6
CLN3-252ENST00000636907 PANK4Q9NVE7 773 aa18.79■□□□□ 0.6
CLN3-252ENST00000636907 TRPM7Q96QT4 1865 aa18.78■□□□□ 0.6
CLN3-252ENST00000636907 PSMA7O14818 248 aa18.78■□□□□ 0.6
CLN3-252ENST00000636907 ZBTB39O15060 712 aa18.78■□□□□ 0.6
CLN3-252ENST00000636907 CCNE2O96020 404 aa18.78■□□□□ 0.6
CLN3-252ENST00000636907 SERPINC1P01008 464 aa18.78■□□□□ 0.6
CLN3-252ENST00000636907 KCNA2P16389 499 aa18.78■□□□□ 0.6
CLN3-252ENST00000636907 CDK11BP21127 795 aaKnown RBP18.78■□□□□ 0.6
CLN3-252ENST00000636907 HUNKP57058 714 aa18.78■□□□□ 0.6
CLN3-252ENST00000636907 RAD51AP2Q09MP3 1159 aa18.78■□□□□ 0.6
CLN3-252ENST00000636907 STXBP2Q15833 593 aa18.78■□□□□ 0.6
CLN3-252ENST00000636907 GNPTABQ3T906 1256 aa18.78■□□□□ 0.6
CLN3-252ENST00000636907 FAM43AQ8N2R8 423 aa18.78■□□□□ 0.6
CLN3-252ENST00000636907 DHTKD1Q96HY7 919 aaPredicted RBP18.78■□□□□ 0.6
CLN3-252ENST00000636907 NACC1Q96RE7 527 aa18.78■□□□□ 0.6
CLN3-252ENST00000636907 RUSC1Q9BVN2 902 aa18.78■□□□□ 0.6
CLN3-252ENST00000636907 MROH8Q9H579 483 aa18.78■□□□□ 0.6
CLN3-252ENST00000636907 ADD3Q9UEY8 706 aaKnown RBP18.78■□□□□ 0.6
CLN3-252ENST00000636907 SAMM50Q9Y512 469 aa18.78■□□□□ 0.6
CLN3-252ENST00000636907 KIAA1217Q5T5P2 1943 aa18.78■□□□□ 0.6
CLN3-252ENST00000636907 FRMD3A2A2Y4 597 aa18.77■□□□□ 0.6
CLN3-252ENST00000636907 TRIM49BA6NDI0 452 aa18.77■□□□□ 0.6
CLN3-252ENST00000636907 SPATA31C2B4DYI2 1134 aa18.77■□□□□ 0.6
CLN3-252ENST00000636907 EIF3JO75822 258 aaKnown RBP18.77■□□□□ 0.6
CLN3-252ENST00000636907 P4HBP07237 508 aaKnown RBP18.77■□□□□ 0.6
CLN3-252ENST00000636907 PMS1P54277 932 aaKnown RBP18.77■□□□□ 0.6
CLN3-252ENST00000636907 KRT76Q01546 638 aa18.77■□□□□ 0.6
CLN3-252ENST00000636907 PSMD2Q13200 908 aa18.77■□□□□ 0.6
CLN3-252ENST00000636907 GIT2Q14161 759 aa18.77■□□□□ 0.6
CLN3-252ENST00000636907 CDKAL1Q5VV42 579 aa18.77■□□□□ 0.6
CLN3-252ENST00000636907 CCDC65Q8IXS2 484 aa18.77■□□□□ 0.6
CLN3-252ENST00000636907 SHCBP1Q8NEM2 672 aa18.77■□□□□ 0.6
CLN3-252ENST00000636907 CDHR1Q96JP9 859 aa18.77■□□□□ 0.6
CLN3-252ENST00000636907 MMP19Q99542 508 aa18.77■□□□□ 0.6
CLN3-252ENST00000636907 PGK2P07205 417 aa18.76■□□□□ 0.59
CLN3-252ENST00000636907 EDNRBP24530 442 aa18.76■□□□□ 0.59
CLN3-252ENST00000636907 PPP1R2P41236 205 aa18.76■□□□□ 0.59
CLN3-252ENST00000636907 JAK3P52333 1124 aa18.76■□□□□ 0.59
CLN3-252ENST00000636907 UBASH3AP57075 661 aa18.76■□□□□ 0.59
CLN3-252ENST00000636907 TPD52L1Q16890 204 aaPredicted RBP18.76■□□□□ 0.59
CLN3-252ENST00000636907 NAP1L5Q96NT1 182 aaPredicted RBP18.76■□□□□ 0.59
CLN3-252ENST00000636907 PTPN18Q99952 460 aa18.76■□□□□ 0.59
CLN3-252ENST00000636907 PORCNQ9H237 461 aa18.76■□□□□ 0.59
CLN3-252ENST00000636907 WDR64B1ANS9 1081 aa18.76■□□□□ 0.59
CLN3-252ENST00000636907 CCNE1P24864 410 aa18.76■□□□□ 0.59
CLN3-252ENST00000636907 SFNP31947 248 aa18.76■□□□□ 0.59
CLN3-252ENST00000636907 KCTD2Q14681 263 aa18.76■□□□□ 0.59
CLN3-252ENST00000636907 FAM26FQ5R3K3 315 aa18.76■□□□□ 0.59
CLN3-252ENST00000636907 WDR78Q5VTH9 848 aa18.76■□□□□ 0.59
CLN3-252ENST00000636907 RINT1Q6NUQ1 792 aa18.76■□□□□ 0.59
CLN3-252ENST00000636907 GLIS3Q8NEA6 775 aa18.76■□□□□ 0.59
CLN3-252ENST00000636907 GPRC5AQ8NFJ5 357 aa18.76■□□□□ 0.59
CLN3-252ENST00000636907 FGD4Q96M96 766 aa18.76■□□□□ 0.59
CLN3-252ENST00000636907 REEP2Q9BRK0 252 aa18.76■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms