RNA–Protein interactions for RNA: ENST00000636839.1

CLN3-250, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,018 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-250ENST00000636839 KIAA1217Q5T5P2 1943 aa22.49■■□□□ 1.19
CLN3-250ENST00000636839 ZNFX1Q9P2E3 1918 aaKnown RBP22.49■■□□□ 1.19
CLN3-250ENST00000636839 AP5Z1O43299 807 aa22.49■■□□□ 1.19
CLN3-250ENST00000636839 KMT5BQ4FZB7 885 aa22.49■■□□□ 1.19
CLN3-250ENST00000636839 MIER3Q7Z3K6 550 aa22.49■■□□□ 1.19
CLN3-250ENST00000636839 GPR142Q7Z601 462 aa22.49■■□□□ 1.19
CLN3-250ENST00000636839 HPS3Q969F9 1004 aa22.49■■□□□ 1.19
CLN3-250ENST00000636839 SAMM50Q9Y512 469 aa22.49■■□□□ 1.19
CLN3-250ENST00000636839 RAD51AP2Q09MP3 1159 aa22.48■■□□□ 1.19
CLN3-250ENST00000636839 EPHA7Q15375 998 aa22.48■■□□□ 1.19
CLN3-250ENST00000636839 AOPEPQ8N6M6 819 aa22.48■■□□□ 1.19
CLN3-250ENST00000636839 MAGEF1Q9HAY2 307 aa22.48■■□□□ 1.19
CLN3-250ENST00000636839 GDAQ9Y2T3 454 aa22.48■■□□□ 1.19
CLN3-250ENST00000636839 AOC2O75106 756 aa22.48■■□□□ 1.19
CLN3-250ENST00000636839 YY1P25490 414 aa22.48■■□□□ 1.19
CLN3-250ENST00000636839 ASIC1P78348 528 aa22.48■■□□□ 1.19
CLN3-250ENST00000636839 CACNB1Q02641 598 aaPredicted RBP22.48■■□□□ 1.19
CLN3-250ENST00000636839 DDX12PQ92771 950 aa22.48■■□□□ 1.19
CLN3-250ENST00000636839 POLD4Q9HCU8 107 aa22.48■■□□□ 1.19
CLN3-250ENST00000636839 STAM2O75886 525 aa22.47■■□□□ 1.19
CLN3-250ENST00000636839 SLC12A3P55017 1021 aa22.47■■□□□ 1.19
CLN3-250ENST00000636839 UGCGQ16739 394 aa22.47■■□□□ 1.19
CLN3-250ENST00000636839 GNPTABQ3T906 1256 aa22.47■■□□□ 1.19
CLN3-250ENST00000636839 ARSHQ5FYA8 562 aa22.47■■□□□ 1.19
CLN3-250ENST00000636839 TMEM63BQ5T3F8 832 aa22.47■■□□□ 1.19
CLN3-250ENST00000636839 TRMT1LQ7Z2T5 733 aaKnown RBP22.47■■□□□ 1.19
CLN3-250ENST00000636839 MED15Q96RN5 788 aa22.47■■□□□ 1.19
CLN3-250ENST00000636839 LXNQ9BS40 222 aa22.47■■□□□ 1.19
CLN3-250ENST00000636839 DNM3Q9UQ16 869 aa22.47■■□□□ 1.19
CLN3-250ENST00000636839 MAPK8IP1Q9UQF2 711 aa22.47■■□□□ 1.19
CLN3-250ENST00000636839 MAFGO15525 162 aa22.47■■□□□ 1.19
CLN3-250ENST00000636839 PTGS1P23219 599 aa22.47■■□□□ 1.19
CLN3-250ENST00000636839 CRHR2Q13324 411 aa22.47■■□□□ 1.19
CLN3-250ENST00000636839 ZNF792Q3KQV3 632 aa22.47■■□□□ 1.19
CLN3-250ENST00000636839 FBXO16Q8IX29 292 aaPredicted RBP22.47■■□□□ 1.19
CLN3-250ENST00000636839 BHMT2Q9H2M3 363 aa22.47■■□□□ 1.19
CLN3-250ENST00000636839 TUFT1Q9NNX1 390 aa22.47■■□□□ 1.19
CLN3-250ENST00000636839 DOCK5Q9H7D0 1870 aa22.46■■□□□ 1.19
CLN3-250ENST00000636839 CYFIP1Q7L576 1253 aa22.46■■□□□ 1.19
CLN3-250ENST00000636839 TRIML1Q8N9V2 468 aa22.46■■□□□ 1.19
CLN3-250ENST00000636839 IVNS1ABPQ9Y6Y0 642 aa22.46■■□□□ 1.19
CLN3-250ENST00000636839 TLR2O60603 784 aa22.45■■□□□ 1.18
CLN3-250ENST00000636839 ARIH2O95376 493 aa22.45■■□□□ 1.18
CLN3-250ENST00000636839 CYP11B2P19099 503 aa22.45■■□□□ 1.18
CLN3-250ENST00000636839 INHBEP58166 350 aa22.45■■□□□ 1.18
CLN3-250ENST00000636839 AMPD3Q01432 767 aa22.45■■□□□ 1.18
CLN3-250ENST00000636839 LY6KQ17RY6 165 aa22.45■■□□□ 1.18
CLN3-250ENST00000636839 C17orf99Q6UX52 265 aa22.45■■□□□ 1.18
CLN3-250ENST00000636839 GPBP1Q86WP2 473 aa22.45■■□□□ 1.18
CLN3-250ENST00000636839 DNAJC19Q96DA6 116 aa22.45■■□□□ 1.18
CLN3-250ENST00000636839 NAT10Q9H0A0 1025 aaKnown RBP22.45■■□□□ 1.18
CLN3-250ENST00000636839 TMEM150BA6NC51 233 aa22.45■■□□□ 1.18
CLN3-250ENST00000636839 PPP1R3GB7ZBB8 358 aa22.45■■□□□ 1.18
CLN3-250ENST00000636839 SLC26A4O43511 780 aa22.45■■□□□ 1.18
CLN3-250ENST00000636839 ICAM3P32942 547 aa22.45■■□□□ 1.18
CLN3-250ENST00000636839 TM4SF4P48230 202 aa22.45■■□□□ 1.18
CLN3-250ENST00000636839 PLCB2Q00722 1185 aa22.45■■□□□ 1.18
CLN3-250ENST00000636839 NCAPHQ15003 741 aa22.45■■□□□ 1.18
CLN3-250ENST00000636839 KLHL10Q6JEL2 608 aa22.45■■□□□ 1.18
CLN3-250ENST00000636839 PLEKHH3Q7Z736 793 aa22.45■■□□□ 1.18
CLN3-250ENST00000636839 TRMT44Q8IYL2 757 aaKnown RBP22.45■■□□□ 1.18
CLN3-250ENST00000636839 HHIPL1Q96JK4 782 aa22.45■■□□□ 1.18
CLN3-250ENST00000636839 SH2D3AQ9BRG2 576 aa22.45■■□□□ 1.18
CLN3-250ENST00000636839 JPH1Q9HDC5 661 aaPredicted RBP22.45■■□□□ 1.18
CLN3-250ENST00000636839 PDGFCQ9NRA1 345 aa22.45■■□□□ 1.18
CLN3-250ENST00000636839 STK24Q9Y6E0 443 aa22.45■■□□□ 1.18
CLN3-250ENST00000636839 MCM3APO60318 1980 aa22.45■■□□□ 1.18
CLN3-250ENST00000636839 CAVIN2O95810 425 aa22.44■■□□□ 1.18
CLN3-250ENST00000636839 MYL1P05976 194 aa22.44■■□□□ 1.18
CLN3-250ENST00000636839 UBA1P22314 1058 aaKnown RBP22.44■■□□□ 1.18
CLN3-250ENST00000636839 MLKLQ8NB16 471 aa22.44■■□□□ 1.18
CLN3-250ENST00000636839 CDHR1Q96JP9 859 aa22.44■■□□□ 1.18
CLN3-250ENST00000636839 RUSC1Q9BVN2 902 aa22.44■■□□□ 1.18
CLN3-250ENST00000636839 PLXNB2O15031 1838 aa22.44■■□□□ 1.18
CLN3-250ENST00000636839 STRNO43815 780 aa22.43■■□□□ 1.18
CLN3-250ENST00000636839 IDEP14735 1019 aa22.43■■□□□ 1.18
CLN3-250ENST00000636839 KRT76Q01546 638 aa22.43■■□□□ 1.18
CLN3-250ENST00000636839 SREBF2Q12772 1141 aa22.43■■□□□ 1.18
CLN3-250ENST00000636839 GRB14Q14449 540 aa22.43■■□□□ 1.18
CLN3-250ENST00000636839 ARMCX2Q7L311 632 aa22.43■■□□□ 1.18
CLN3-250ENST00000636839 SYT2Q8N9I0 419 aaPredicted RBP22.43■■□□□ 1.18
CLN3-250ENST00000636839 ZCCHC17Q9NP64 241 aaKnown RBP22.43■■□□□ 1.18
CLN3-250ENST00000636839 BECN2A8MW95 431 aa22.43■■□□□ 1.18
CLN3-250ENST00000636839 RHOBTB3O94955 611 aa22.43■■□□□ 1.18
CLN3-250ENST00000636839 EYA4O95677 639 aa22.43■■□□□ 1.18
CLN3-250ENST00000636839 P4HBP07237 508 aaKnown RBP22.43■■□□□ 1.18
CLN3-250ENST00000636839 STX17P56962 302 aa22.43■■□□□ 1.18
CLN3-250ENST00000636839 STK4Q13043 487 aa22.43■■□□□ 1.18
CLN3-250ENST00000636839 UVSSAQ2YD98 709 aa22.43■■□□□ 1.18
CLN3-250ENST00000636839 ZNF658Q5TYW1 1059 aaPredicted RBP22.43■■□□□ 1.18
CLN3-250ENST00000636839 DPP9Q86TI2 863 aa22.43■■□□□ 1.18
CLN3-250ENST00000636839 BPIFA3Q9BQP9 254 aa22.43■■□□□ 1.18
CLN3-250ENST00000636839 SLC9A2Q9UBY0 812 aa22.43■■□□□ 1.18
CLN3-250ENST00000636839 LRRC37A2A6NM11 1700 aa22.42■■□□□ 1.18
CLN3-250ENST00000636839 WDR64B1ANS9 1081 aa22.42■■□□□ 1.18
CLN3-250ENST00000636839 MAPK4P31152 587 aa22.42■■□□□ 1.18
CLN3-250ENST00000636839 PRCPP42785 496 aa22.42■■□□□ 1.18
CLN3-250ENST00000636839 ACTR2P61160 394 aa22.42■■□□□ 1.18
CLN3-250ENST00000636839 HTRA3P83110 453 aa22.42■■□□□ 1.18
CLN3-250ENST00000636839 KCNB1Q14721 858 aa22.42■■□□□ 1.18
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms