RNA–Protein interactions for RNA: ENST00000636172.1

CLN3-245, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,536 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-245ENST00000636172 MIER3Q7Z3K6 550 aa23.13■■□□□ 1.29
CLN3-245ENST00000636172 TRPV1Q8NER1 839 aa23.13■■□□□ 1.29
CLN3-245ENST00000636172 TCEAL9Q9UHQ7 104 aa23.13■■□□□ 1.29
CLN3-245ENST00000636172 WDR64B1ANS9 1081 aa23.12■■□□□ 1.29
CLN3-245ENST00000636172 ADCY6O43306 1168 aa23.12■■□□□ 1.29
CLN3-245ENST00000636172 NR1I2O75469 434 aa23.12■■□□□ 1.29
CLN3-245ENST00000636172 CYBAP13498 195 aa23.12■■□□□ 1.29
CLN3-245ENST00000636172 SMPD1P17405 629 aa23.12■■□□□ 1.29
CLN3-245ENST00000636172 SP4Q02446 784 aa23.12■■□□□ 1.29
CLN3-245ENST00000636172 DUSP28Q4G0W2 176 aa23.12■■□□□ 1.29
CLN3-245ENST00000636172 GJC2Q5T442 439 aaPredicted RBP23.12■■□□□ 1.29
CLN3-245ENST00000636172 ERMNQ8TAM6 284 aa23.12■■□□□ 1.29
CLN3-245ENST00000636172 PXYLP1Q8TE99 480 aa23.12■■□□□ 1.29
CLN3-245ENST00000636172 EIF2AK1Q9BQI3 630 aaKnown RBP23.12■■□□□ 1.29
CLN3-245ENST00000636172 PANK2Q9BZ23 570 aa23.12■■□□□ 1.29
CLN3-245ENST00000636172 MED24O75448 989 aa23.11■■□□□ 1.29
CLN3-245ENST00000636172 HMGCRP04035 888 aa23.11■■□□□ 1.29
CLN3-245ENST00000636172 SFNP31947 248 aa23.11■■□□□ 1.29
CLN3-245ENST00000636172 SYKP43405 635 aa23.11■■□□□ 1.29
CLN3-245ENST00000636172 CTCFP49711 727 aaPredicted RBP23.11■■□□□ 1.29
CLN3-245ENST00000636172 JAK3P52333 1124 aa23.11■■□□□ 1.29
CLN3-245ENST00000636172 ACTR2P61160 394 aa23.11■■□□□ 1.29
CLN3-245ENST00000636172 EPHA7Q15375 998 aa23.11■■□□□ 1.29
CLN3-245ENST00000636172 DHX37Q8IY37 1157 aaKnown RBP23.11■■□□□ 1.29
CLN3-245ENST00000636172 SMAP1Q8IYB5 467 aaPredicted RBP23.11■■□□□ 1.29
CLN3-245ENST00000636172 PDILTQ8N807 584 aa23.11■■□□□ 1.29
CLN3-245ENST00000636172 MLXIPQ9HAP2 919 aa23.11■■□□□ 1.29
CLN3-245ENST00000636172 PRDM10Q9NQV6 1147 aa23.11■■□□□ 1.29
CLN3-245ENST00000636172 DISC1Q9NRI5 854 aa23.11■■□□□ 1.29
CLN3-245ENST00000636172 CENPFP49454 3210 aa23.1■■□□□ 1.29
CLN3-245ENST00000636172 POLR2DO15514 142 aaKnown RBP23.1■■□□□ 1.29
CLN3-245ENST00000636172 SPATA31C1P0DKV0 1188 aa23.1■■□□□ 1.29
CLN3-245ENST00000636172 CCT6AP40227 531 aaKnown RBP23.1■■□□□ 1.29
CLN3-245ENST00000636172 TNFAIP2Q03169 654 aa23.1■■□□□ 1.29
CLN3-245ENST00000636172 ARHGAP1Q07960 439 aa23.1■■□□□ 1.29
CLN3-245ENST00000636172 CACNB2Q08289 660 aaPredicted RBP23.1■■□□□ 1.29
CLN3-245ENST00000636172 GRB10Q13322 594 aa23.1■■□□□ 1.29
CLN3-245ENST00000636172 ZRSR1Q15695 479 aaKnown RBP23.1■■□□□ 1.29
CLN3-245ENST00000636172 ECM1Q16610 540 aa23.1■■□□□ 1.29
CLN3-245ENST00000636172 HAUS3Q68CZ6 603 aa23.1■■□□□ 1.29
CLN3-245ENST00000636172 RDM1Q8NG50 284 aa23.1■■□□□ 1.29
CLN3-245ENST00000636172 PNMA5Q96PV4 448 aa23.1■■□□□ 1.29
CLN3-245ENST00000636172 HSD17B14Q9BPX1 270 aa23.1■■□□□ 1.29
CLN3-245ENST00000636172 DACT1Q9NYF0 836 aa23.1■■□□□ 1.29
CLN3-245ENST00000636172 RGL1Q9NZL6 768 aa23.1■■□□□ 1.29
CLN3-245ENST00000636172 SAMM50Q9Y512 469 aa23.1■■□□□ 1.29
CLN3-245ENST00000636172 PTCH2Q9Y6C5 1203 aa23.1■■□□□ 1.29
CLN3-245ENST00000636172 STK24Q9Y6E0 443 aa23.1■■□□□ 1.29
CLN3-245ENST00000636172 WDR81Q562E7 1941 aa23.1■■□□□ 1.29
CLN3-245ENST00000636172 TRAK2O60296 914 aa23.09■■□□□ 1.29
CLN3-245ENST00000636172 GH1P01241 217 aa23.09■■□□□ 1.29
CLN3-245ENST00000636172 RPA1P27694 616 aa23.09■■□□□ 1.29
CLN3-245ENST00000636172 CYP4A11Q02928 519 aa23.09■■□□□ 1.29
CLN3-245ENST00000636172 KLHL40Q2TBA0 621 aa23.09■■□□□ 1.29
CLN3-245ENST00000636172 HYIQ5T013 277 aa23.09■■□□□ 1.29
CLN3-245ENST00000636172 CATSPER3Q86XQ3 398 aa23.09■■□□□ 1.29
CLN3-245ENST00000636172 RASSF8Q8NHQ8 419 aa23.09■■□□□ 1.29
CLN3-245ENST00000636172 CALML4Q96GE6 196 aa23.09■■□□□ 1.29
CLN3-245ENST00000636172 PLIN2Q99541 437 aa23.09■■□□□ 1.29
CLN3-245ENST00000636172 POLR3CQ9BUI4 534 aaPredicted RBP23.09■■□□□ 1.29
CLN3-245ENST00000636172 PCDHA10Q9Y5I2 948 aa23.09■■□□□ 1.29
CLN3-245ENST00000636172 POTEB3A0JP26 581 aa23.08■■□□□ 1.29
CLN3-245ENST00000636172 NKRFO15226 690 aaKnown RBP eCLIP23.08■■□□□ 1.29
CLN3-245ENST00000636172 SLC26A4O43511 780 aa23.08■■□□□ 1.29
CLN3-245ENST00000636172 ZNF202O95125 648 aa23.08■■□□□ 1.29
CLN3-245ENST00000636172 PRKAR2AP13861 404 aaKnown RBP23.08■■□□□ 1.29
CLN3-245ENST00000636172 E2F4Q16254 413 aa23.08■■□□□ 1.29
CLN3-245ENST00000636172 SKOR2Q2VWA4 1001 aaPredicted RBP23.08■■□□□ 1.29
CLN3-245ENST00000636172 TMEM119Q4V9L6 283 aa23.08■■□□□ 1.29
CLN3-245ENST00000636172 POTEBQ6S5H4 581 aa23.08■■□□□ 1.29
CLN3-245ENST00000636172 ABHD15Q6UXT9 468 aa23.08■■□□□ 1.29
CLN3-245ENST00000636172 SLAIN1Q8ND83 568 aa23.08■■□□□ 1.29
CLN3-245ENST00000636172 LRRC15Q8TF66 581 aa23.08■■□□□ 1.29
CLN3-245ENST00000636172 EMID1Q96A84 441 aaPredicted RBP23.08■■□□□ 1.29
CLN3-245ENST00000636172 DYDC2Q96IM9 177 aa23.08■■□□□ 1.29
CLN3-245ENST00000636172 CCDC39Q9UFE4 941 aa23.08■■□□□ 1.29
CLN3-245ENST00000636172 FAM184BQ9ULE4 1060 aa23.08■■□□□ 1.29
CLN3-245ENST00000636172 GNEQ9Y223 722 aaKnown RBP23.08■■□□□ 1.29
CLN3-245ENST00000636172 KDM3AQ9Y4C1 1321 aa23.08■■□□□ 1.29
CLN3-245ENST00000636172 POTEFA5A3E0 1075 aa23.08■■□□□ 1.28
CLN3-245ENST00000636172 SLITRK3O94933 977 aa23.08■■□□□ 1.28
CLN3-245ENST00000636172 ATG7O95352 703 aa23.08■■□□□ 1.28
CLN3-245ENST00000636172 PLCG1P19174 1290 aa23.08■■□□□ 1.28
CLN3-245ENST00000636172 LAMC2Q13753 1193 aa23.08■■□□□ 1.28
CLN3-245ENST00000636172 HSDL1Q3SXM5 330 aa23.08■■□□□ 1.28
CLN3-245ENST00000636172 MAP3K21Q5TCX8 1036 aa23.08■■□□□ 1.28
CLN3-245ENST00000636172 BANK1Q8NDB2 785 aa23.08■■□□□ 1.28
CLN3-245ENST00000636172 NEK9Q8TD19 979 aa23.08■■□□□ 1.28
CLN3-245ENST00000636172 LENG1Q96BZ8 264 aaPredicted RBP23.08■■□□□ 1.28
CLN3-245ENST00000636172 DHX58Q96C10 678 aa23.08■■□□□ 1.28
CLN3-245ENST00000636172 CDK5RAP3Q96JB5 506 aa23.08■■□□□ 1.28
CLN3-245ENST00000636172 SPATA33Q96N06 139 aa23.08■■□□□ 1.28
CLN3-245ENST00000636172 GPR20Q99678 358 aa23.08■■□□□ 1.28
CLN3-245ENST00000636172 TUFT1Q9NNX1 390 aa23.08■■□□□ 1.28
CLN3-245ENST00000636172 GSTTP1A0A1W2PQM5 241 aa23.07■■□□□ 1.28
CLN3-245ENST00000636172 SUPT20HL2P0C7V6 817 aa23.07■■□□□ 1.28
CLN3-245ENST00000636172 AKR1A1P14550 325 aa23.07■■□□□ 1.28
CLN3-245ENST00000636172 CTTNQ14247 550 aaKnown RBP23.07■■□□□ 1.28
CLN3-245ENST00000636172 LONRF3Q496Y0 759 aa23.07■■□□□ 1.28
CLN3-245ENST00000636172 NAALADL2Q58DX5 795 aa23.07■■□□□ 1.28
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms