RNA–Protein interactions for RNA: ENST00000635750.1

SCN1A-209, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,299 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-209ENST00000635750 TOPBP1Q92547 1522 aa5.97□□□□□ -1.45
SCN1A-209ENST00000635750 EFCAB8A8MWE9 144 aa5.97□□□□□ -1.45
SCN1A-209ENST00000635750 SUPT3HB4E1H0 165 aa5.97□□□□□ -1.45
SCN1A-209ENST00000635750 CHMLP26374 656 aa5.97□□□□□ -1.45
SCN1A-209ENST00000635750 BASP1P80723 227 aaKnown RBP5.97□□□□□ -1.45
SCN1A-209ENST00000635750 NR5A1Q13285 461 aa5.97□□□□□ -1.45
SCN1A-209ENST00000635750 STXBP2Q15833 593 aa5.97□□□□□ -1.45
SCN1A-209ENST00000635750 NBPF20Q3BBV1 942 aa5.97□□□□□ -1.45
SCN1A-209ENST00000635750 DCAF4L1Q3SXM0 396 aa5.97□□□□□ -1.45
SCN1A-209ENST00000635750 NBPF10Q6P3W6 841 aaKnown RBP5.97□□□□□ -1.45
SCN1A-209ENST00000635750 NUDCD3Q8IVD9 361 aa5.97□□□□□ -1.45
SCN1A-209ENST00000635750 B4GALNT2Q8NHY0 566 aa5.97□□□□□ -1.45
SCN1A-209ENST00000635750 EXT2Q93063 718 aa5.97□□□□□ -1.45
SCN1A-209ENST00000635750 ZNF594Q96JF6 807 aaPredicted RBP5.97□□□□□ -1.45
SCN1A-209ENST00000635750 SEMA3EO15041 775 aa5.97□□□□□ -1.45
SCN1A-209ENST00000635750 BUB1O43683 1085 aa5.97□□□□□ -1.45
SCN1A-209ENST00000635750 GUCA1CO95843 209 aa5.97□□□□□ -1.45
SCN1A-209ENST00000635750 KRT1P04264 644 aa5.97□□□□□ -1.45
SCN1A-209ENST00000635750 BTDP43251 543 aa5.97□□□□□ -1.45
SCN1A-209ENST00000635750 TMEM259Q4ZIN3 620 aa5.97□□□□□ -1.45
SCN1A-209ENST00000635750 C16orf62Q7Z3J2 963 aa5.97□□□□□ -1.45
SCN1A-209ENST00000635750 ZNF654Q8IZM8 581 aa5.97□□□□□ -1.45
SCN1A-209ENST00000635750 FBXO41Q8TF61 875 aa5.97□□□□□ -1.45
SCN1A-209ENST00000635750 MAGOHBQ96A72 148 aaKnown RBP5.97□□□□□ -1.45
SCN1A-209ENST00000635750 SPATS2LQ9NUQ6 558 aaKnown RBP5.97□□□□□ -1.45
SCN1A-209ENST00000635750 TRIM33Q9UPN9 1127 aa5.97□□□□□ -1.45
SCN1A-209ENST00000635750 GOLGA8RI6L899 631 aa5.97□□□□□ -1.45
SCN1A-209ENST00000635750 CYBBP04839 570 aa5.97□□□□□ -1.45
SCN1A-209ENST00000635750 SCG2P13521 617 aa5.97□□□□□ -1.45
SCN1A-209ENST00000635750 KRT4P19013 534 aa5.97□□□□□ -1.45
SCN1A-209ENST00000635750 SLC9A1P19634 815 aa5.97□□□□□ -1.45
SCN1A-209ENST00000635750 ZNF75DP51815 510 aa5.97□□□□□ -1.45
SCN1A-209ENST00000635750 TNFAIP2Q03169 654 aa5.97□□□□□ -1.45
SCN1A-209ENST00000635750 DPYDQ12882 1025 aa5.97□□□□□ -1.45
SCN1A-209ENST00000635750 KRT72Q14CN4 511 aa5.97□□□□□ -1.45
SCN1A-209ENST00000635750 SLFN12LQ6IEE8 588 aa5.97□□□□□ -1.45
SCN1A-209ENST00000635750 PDXDC2PQ6P474 469 aa5.97□□□□□ -1.45
SCN1A-209ENST00000635750 SCN4BQ8IWT1 228 aa5.97□□□□□ -1.45
SCN1A-209ENST00000635750 PNMA1Q8ND90 353 aa5.97□□□□□ -1.45
SCN1A-209ENST00000635750 TTC8Q8TAM2 541 aa5.97□□□□□ -1.45
SCN1A-209ENST00000635750 PIP4K2CQ8TBX8 421 aa5.97□□□□□ -1.45
SCN1A-209ENST00000635750 DCUN1D1Q96GG9 259 aa5.97□□□□□ -1.45
SCN1A-209ENST00000635750 NLRP4Q96MN2 994 aa5.97□□□□□ -1.45
SCN1A-209ENST00000635750 SLC52A2Q9HAB3 445 aa5.97□□□□□ -1.45
SCN1A-209ENST00000635750 RPRD1BQ9NQG5 326 aaKnown RBP5.97□□□□□ -1.45
SCN1A-209ENST00000635750 C6orf203Q9P0P8 240 aaPredicted RBP5.97□□□□□ -1.45
SCN1A-209ENST00000635750 TRPC5Q9UL62 973 aaPredicted RBP5.97□□□□□ -1.45
SCN1A-209ENST00000635750 A0A1B0GW55 424 aa5.97□□□□□ -1.45
SCN1A-209ENST00000635750 FAM170AA1A519 330 aa5.97□□□□□ -1.45
SCN1A-209ENST00000635750 CCDC78A2IDD5 438 aa5.97□□□□□ -1.45
SCN1A-209ENST00000635750 GOLGA8SH3BPF8 625 aa5.97□□□□□ -1.45
SCN1A-209ENST00000635750 ZNF197O14709 1029 aa5.97□□□□□ -1.45
SCN1A-209ENST00000635750 COBLO75128 1261 aa5.97□□□□□ -1.45
SCN1A-209ENST00000635750 DDAH1O94760 285 aa5.97□□□□□ -1.45
SCN1A-209ENST00000635750 DUX4L2P0CJ85 424 aa5.97□□□□□ -1.45
SCN1A-209ENST00000635750 DUX4L3P0CJ86 424 aa5.97□□□□□ -1.45
SCN1A-209ENST00000635750 DUX4L4P0CJ87 422 aa5.97□□□□□ -1.45
SCN1A-209ENST00000635750 DUX4L5P0CJ88 424 aa5.97□□□□□ -1.45
SCN1A-209ENST00000635750 DUX4L6P0CJ89 424 aa5.97□□□□□ -1.45
SCN1A-209ENST00000635750 DUX4L7P0CJ90 424 aa5.97□□□□□ -1.45
SCN1A-209ENST00000635750 MCF2P10911 925 aa5.97□□□□□ -1.45
SCN1A-209ENST00000635750 MAP4P27816 1152 aaKnown RBP5.97□□□□□ -1.45
SCN1A-209ENST00000635750 ST8SIA6P61647 398 aa5.97□□□□□ -1.45
SCN1A-209ENST00000635750 LBRQ14739 615 aaKnown RBP5.97□□□□□ -1.45
SCN1A-209ENST00000635750 ARMC6Q6NXE6 501 aa5.97□□□□□ -1.45
SCN1A-209ENST00000635750 PLEKHM3Q6ZWE6 761 aa5.97□□□□□ -1.45
SCN1A-209ENST00000635750 ATP6V0A4Q9HBG4 840 aa5.97□□□□□ -1.45
SCN1A-209ENST00000635750 SEL1LQ9UBV2 794 aa5.97□□□□□ -1.45
SCN1A-209ENST00000635750 DUX4Q9UBX2 424 aa5.97□□□□□ -1.45
SCN1A-209ENST00000635750 KCNJ14Q9UNX9 436 aa5.97□□□□□ -1.45
SCN1A-209ENST00000635750 TSPOAP1O95153 1857 aa5.97□□□□□ -1.45
SCN1A-209ENST00000635750 IQANK1A0A1B0GTG1 560 aa5.97□□□□□ -1.45
SCN1A-209ENST00000635750 IKBKBO14920 756 aa5.97□□□□□ -1.45
SCN1A-209ENST00000635750 TRPA1O75762 1119 aa5.97□□□□□ -1.45
SCN1A-209ENST00000635750 ZBED1O96006 694 aa5.97□□□□□ -1.45
SCN1A-209ENST00000635750 MT-ND3P03897 115 aa5.97□□□□□ -1.45
SCN1A-209ENST00000635750 H2AFZP0C0S5 128 aa5.97□□□□□ -1.45
SCN1A-209ENST00000635750 TCP1P17987 556 aaKnown RBP5.97□□□□□ -1.45
SCN1A-209ENST00000635750 SMARCA1P28370 1054 aa5.97□□□□□ -1.45
SCN1A-209ENST00000635750 CCDC15Q0P6D6 951 aa5.97□□□□□ -1.45
SCN1A-209ENST00000635750 KRT39Q6A163 491 aa5.97□□□□□ -1.45
SCN1A-209ENST00000635750 OR6B2Q6IFH4 312 aa5.97□□□□□ -1.45
SCN1A-209ENST00000635750 H2AFVQ71UI9 128 aa5.97□□□□□ -1.45
SCN1A-209ENST00000635750 KBTBD3Q8NAB2 608 aa5.97□□□□□ -1.45
SCN1A-209ENST00000635750 C8orf58Q8NAV2 365 aa5.97□□□□□ -1.45
SCN1A-209ENST00000635750 QTRT2Q9H974 415 aaKnown RBP5.97□□□□□ -1.45
SCN1A-209ENST00000635750 TOPORSQ9NS56 1045 aaPredicted RBP5.97□□□□□ -1.45
SCN1A-209ENST00000635750 ANGPTL2Q9UKU9 493 aa5.97□□□□□ -1.45
SCN1A-209ENST00000635750 KIAA0586Q9BVV6 1533 aa5.97□□□□□ -1.45
SCN1A-209ENST00000635750 DUOX2Q9NRD8 1548 aa5.97□□□□□ -1.45
SCN1A-209ENST00000635750 RPRD2Q5VT52 1461 aaKnown RBP5.97□□□□□ -1.45
SCN1A-209ENST00000635750 PI4K2BG5E9Z4 385 aa5.96□□□□□ -1.45
SCN1A-209ENST00000635750 CLTAP09496 248 aa5.96□□□□□ -1.45
SCN1A-209ENST00000635750 MARK3P27448 753 aa5.96□□□□□ -1.45
SCN1A-209ENST00000635750 AARSP49588 968 aaKnown RBP eCLIP5.96□□□□□ -1.45
SCN1A-209ENST00000635750 DYNLT1P63172 113 aa5.96□□□□□ -1.45
SCN1A-209ENST00000635750 C10orf76Q5T2E6 689 aa5.96□□□□□ -1.45
SCN1A-209ENST00000635750 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP5.96□□□□□ -1.45
SCN1A-209ENST00000635750 FAM129AQ9BZQ8 928 aa5.96□□□□□ -1.45
SCN1A-209ENST00000635750 ING2Q9H160 280 aa5.96□□□□□ -1.45
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms