RNA–Protein interactions for RNA: ENST00000621814.4

CCDC88A-214, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 5 BASIC

Gene CCDC88A, Length 3,089 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-214ENST00000621814 CATSPER3Q86XQ3 398 aa14.25□□□□□ -0.13
CCDC88A-214ENST00000621814 HYOU1Q9Y4L1 999 aa14.25□□□□□ -0.13
CCDC88A-214ENST00000621814 COL24A1Q17RW2 1714 aa14.25□□□□□ -0.13
CCDC88A-214ENST00000621814 CHMP2AO43633 222 aa14.25□□□□□ -0.13
CCDC88A-214ENST00000621814 HOXA10P31260 410 aaPredicted RBP14.25□□□□□ -0.13
CCDC88A-214ENST00000621814 HNRNPH3P31942 346 aaKnown RBP14.25□□□□□ -0.13
CCDC88A-214ENST00000621814 COBLL1Q53SF7 1204 aa14.25□□□□□ -0.13
CCDC88A-214ENST00000621814 ZNF662Q6ZS27 426 aa14.25□□□□□ -0.13
CCDC88A-214ENST00000621814 P2RX7Q99572 595 aaKnown RBP14.25□□□□□ -0.13
CCDC88A-214ENST00000621814 RBM12Q9NTZ6 932 aaKnown RBP14.25□□□□□ -0.13
CCDC88A-214ENST00000621814 LCMT1Q9UIC8 334 aa14.25□□□□□ -0.13
CCDC88A-214ENST00000621814 GOLGA6BA6NDN3 693 aa14.24□□□□□ -0.13
CCDC88A-214ENST00000621814 CLIC2O15247 247 aa14.24□□□□□ -0.13
CCDC88A-214ENST00000621814 SLC9A1P19634 815 aa14.24□□□□□ -0.13
CCDC88A-214ENST00000621814 KLRC1P26715 233 aa14.24□□□□□ -0.13
CCDC88A-214ENST00000621814 UBXN2AP68543 259 aa14.24□□□□□ -0.13
CCDC88A-214ENST00000621814 KCNH2Q12809 1159 aa14.24□□□□□ -0.13
CCDC88A-214ENST00000621814 IKZF4Q9H2S9 585 aa14.24□□□□□ -0.13
CCDC88A-214ENST00000621814 RSPH14Q9UHP6 348 aa14.24□□□□□ -0.13
CCDC88A-214ENST00000621814 MYH1P12882 1939 aa14.24□□□□□ -0.13
CCDC88A-214ENST00000621814 A0A087X0T9 212 aa14.24□□□□□ -0.13
CCDC88A-214ENST00000621814 ZSCAN5CA6NGD5 496 aaPredicted RBP14.24□□□□□ -0.13
CCDC88A-214ENST00000621814 SPDYE3A6NKU9 549 aa14.24□□□□□ -0.13
CCDC88A-214ENST00000621814 RSPH10B2B2RC85 870 aa14.24□□□□□ -0.13
CCDC88A-214ENST00000621814 FAM228BP0C875 321 aa14.24□□□□□ -0.13
CCDC88A-214ENST00000621814 RSPH10BP0C881 870 aa14.24□□□□□ -0.13
CCDC88A-214ENST00000621814 ARHGAP4P98171 946 aa14.24□□□□□ -0.13
CCDC88A-214ENST00000621814 ICA1Q05084 483 aa14.24□□□□□ -0.13
CCDC88A-214ENST00000621814 ARSHQ5FYA8 562 aa14.24□□□□□ -0.13
CCDC88A-214ENST00000621814 KLHDC7AQ5VTJ3 777 aa14.24□□□□□ -0.13
CCDC88A-214ENST00000621814 PROCA1Q8NCQ7 364 aaPredicted RBP14.24□□□□□ -0.13
CCDC88A-214ENST00000621814 GOLGA5Q8TBA6 731 aa14.24□□□□□ -0.13
CCDC88A-214ENST00000621814 AFAP1L1Q8TED9 768 aa14.24□□□□□ -0.13
CCDC88A-214ENST00000621814 SPAG5Q96R06 1193 aa14.24□□□□□ -0.13
CCDC88A-214ENST00000621814 TLR10Q9BXR5 811 aa14.24□□□□□ -0.13
CCDC88A-214ENST00000621814 MED4Q9NPJ6 270 aa14.24□□□□□ -0.13
CCDC88A-214ENST00000621814 KDM3AQ9Y4C1 1321 aa14.24□□□□□ -0.13
CCDC88A-214ENST00000621814 TARSL2A2RTX5 802 aaKnown RBP14.23□□□□□ -0.13
CCDC88A-214ENST00000621814 CETN3O15182 167 aa14.23□□□□□ -0.13
CCDC88A-214ENST00000621814 NOP2P46087 812 aaKnown RBP14.23□□□□□ -0.13
CCDC88A-214ENST00000621814 ZCWPW2Q504Y3 356 aa14.23□□□□□ -0.13
CCDC88A-214ENST00000621814 C8orf74Q6P047 294 aa14.23□□□□□ -0.13
CCDC88A-214ENST00000621814 SFR1Q86XK3 245 aa14.23□□□□□ -0.13
CCDC88A-214ENST00000621814 CEP72Q9P209 647 aa14.23□□□□□ -0.13
CCDC88A-214ENST00000621814 F5H6K3 240 aa14.23□□□□□ -0.13
CCDC88A-214ENST00000621814 MYBP10242 640 aa14.23□□□□□ -0.13
CCDC88A-214ENST00000621814 GCFC2P16383 781 aaKnown RBP14.23□□□□□ -0.13
CCDC88A-214ENST00000621814 IRX5P78411 483 aaPredicted RBP14.23□□□□□ -0.13
CCDC88A-214ENST00000621814 KLRC3Q07444 240 aa14.23□□□□□ -0.13
CCDC88A-214ENST00000621814 TRMT1LQ7Z2T5 733 aaKnown RBP14.23□□□□□ -0.13
CCDC88A-214ENST00000621814 C10orf67Q8IYJ2 551 aa14.23□□□□□ -0.13
CCDC88A-214ENST00000621814 PROM2Q8N271 834 aa14.23□□□□□ -0.13
CCDC88A-214ENST00000621814 PIGOQ8TEQ8 1089 aa14.23□□□□□ -0.13
CCDC88A-214ENST00000621814 BHMT2Q9H2M3 363 aa14.23□□□□□ -0.13
CCDC88A-214ENST00000621814 RGL1Q9NZL6 768 aa14.23□□□□□ -0.13
CCDC88A-214ENST00000621814 DNM3Q9UQ16 869 aa14.23□□□□□ -0.13
CCDC88A-214ENST00000621814 ATF5Q9Y2D1 282 aaPredicted RBP14.23□□□□□ -0.13
CCDC88A-214ENST00000621814 AFF2P51816 1311 aa14.23□□□□□ -0.13
CCDC88A-214ENST00000621814 FAM86B1E9PN63 330 aa14.23□□□□□ -0.13
CCDC88A-214ENST00000621814 MEIS2O14770 477 aa14.23□□□□□ -0.13
CCDC88A-214ENST00000621814 SERPING1P05155 500 aa14.23□□□□□ -0.13
CCDC88A-214ENST00000621814 FAM86B2P0C5J1 330 aa14.23□□□□□ -0.13
CCDC88A-214ENST00000621814 TCP1P17987 556 aaKnown RBP14.23□□□□□ -0.13
CCDC88A-214ENST00000621814 KCNA1Q09470 495 aa14.23□□□□□ -0.13
CCDC88A-214ENST00000621814 PPP1R18Q6NYC8 613 aa14.23□□□□□ -0.13
CCDC88A-214ENST00000621814 REEP2Q9BRK0 252 aa14.23□□□□□ -0.13
CCDC88A-214ENST00000621814 PCDHB13Q9Y5F0 798 aa14.23□□□□□ -0.13
CCDC88A-214ENST00000621814 ASIC2Q16515 512 aa14.22□□□□□ -0.13
CCDC88A-214ENST00000621814 IQCDQ96DY2 449 aa14.22□□□□□ -0.13
CCDC88A-214ENST00000621814 DHX36Q9H2U1 1008 aaKnown RBP14.22□□□□□ -0.13
CCDC88A-214ENST00000621814 CWC15Q9P013 229 aaKnown RBP14.22□□□□□ -0.13
CCDC88A-214ENST00000621814 HDAC9Q9UKV0 1011 aa14.22□□□□□ -0.13
CCDC88A-214ENST00000621814 TRIM66O15016 1216 aa14.22□□□□□ -0.13
CCDC88A-214ENST00000621814 GCNT3O95395 438 aa14.22□□□□□ -0.13
CCDC88A-214ENST00000621814 ASTE1Q2TB18 679 aaPredicted RBP14.22□□□□□ -0.13
CCDC88A-214ENST00000621814 KSR1Q8IVT5 923 aa14.22□□□□□ -0.13
CCDC88A-214ENST00000621814 KLHL7Q8IXQ5 586 aa14.22□□□□□ -0.13
CCDC88A-214ENST00000621814 FAM184BQ9ULE4 1060 aa14.22□□□□□ -0.13
CCDC88A-214ENST00000621814 PCDHA2Q9Y5H9 948 aa14.22□□□□□ -0.13
CCDC88A-214ENST00000621814 ZBTB39O15060 712 aa14.21□□□□□ -0.13
CCDC88A-214ENST00000621814 GUCY2FP51841 1108 aa14.21□□□□□ -0.13
CCDC88A-214ENST00000621814 GUCY2DQ02846 1103 aa14.21□□□□□ -0.13
CCDC88A-214ENST00000621814 TRIM59Q8IWR1 403 aa14.21□□□□□ -0.13
CCDC88A-214ENST00000621814 KCTD10Q9H3F6 313 aa14.21□□□□□ -0.13
CCDC88A-214ENST00000621814 TDRD3Q9H7E2 651 aaKnown RBP14.21□□□□□ -0.13
CCDC88A-214ENST00000621814 MYH10P35580 1976 aa14.21□□□□□ -0.13
CCDC88A-214ENST00000621814 PLIN4Q96Q06 1357 aa14.21□□□□□ -0.13
CCDC88A-214ENST00000621814 AGPSO00116 658 aa14.21□□□□□ -0.13
CCDC88A-214ENST00000621814 SLC12A3P55017 1021 aa14.21□□□□□ -0.13
CCDC88A-214ENST00000621814 CTTNQ14247 550 aaKnown RBP14.21□□□□□ -0.13
CCDC88A-214ENST00000621814 ZYXQ15942 572 aaKnown RBP14.21□□□□□ -0.13
CCDC88A-214ENST00000621814 CFAP221Q4G0U5 840 aa14.21□□□□□ -0.13
CCDC88A-214ENST00000621814 HAUS3Q68CZ6 603 aa14.21□□□□□ -0.13
CCDC88A-214ENST00000621814 GJB7Q6PEY0 223 aa14.21□□□□□ -0.13
CCDC88A-214ENST00000621814 FBXO11Q86XK2 927 aa14.21□□□□□ -0.13
CCDC88A-214ENST00000621814 KRT12Q99456 494 aa14.21□□□□□ -0.13
CCDC88A-214ENST00000621814 AMNQ9BXJ7 453 aa14.21□□□□□ -0.13
CCDC88A-214ENST00000621814 KCNMB3Q9NPA1 279 aa14.21□□□□□ -0.13
CCDC88A-214ENST00000621814 PSD3Q9NYI0 1048 aa14.21□□□□□ -0.13
CCDC88A-214ENST00000621814 PI4KBQ9UBF8 816 aa14.21□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms