RNA–Protein interactions for RNA: ENST00000620786.4

CLIP1-219, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CLIP1, Length 5,913 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-219ENST00000620786 PPP1R2P3Q6NXS1 205 aa12.34□□□□□ -0.43
CLIP1-219ENST00000620786 PHLDB2Q86SQ0 1253 aa12.34□□□□□ -0.43
CLIP1-219ENST00000620786 TTC1Q99614 292 aa12.34□□□□□ -0.43
CLIP1-219ENST00000620786 ZBTB5O15062 677 aa12.33□□□□□ -0.43
CLIP1-219ENST00000620786 FCER1AP12319 257 aa12.33□□□□□ -0.43
CLIP1-219ENST00000620786 PLCG1P19174 1290 aa12.33□□□□□ -0.43
CLIP1-219ENST00000620786 GBP1P32455 592 aa12.33□□□□□ -0.43
CLIP1-219ENST00000620786 EPHB1P54762 984 aa12.33□□□□□ -0.43
CLIP1-219ENST00000620786 KIF23Q02241 960 aaPredicted RBP12.33□□□□□ -0.43
CLIP1-219ENST00000620786 TWF2Q6IBS0 349 aaKnown RBP12.33□□□□□ -0.43
CLIP1-219ENST00000620786 RAET1EQ8TD07 263 aa12.33□□□□□ -0.43
CLIP1-219ENST00000620786 RPGRIP1Q96KN7 1286 aa12.33□□□□□ -0.43
CLIP1-219ENST00000620786 CIITAP33076 1130 aa12.33□□□□□ -0.44
CLIP1-219ENST00000620786 DYNLT1P63172 113 aa12.33□□□□□ -0.44
CLIP1-219ENST00000620786 RBBP5Q15291 538 aaKnown RBP12.33□□□□□ -0.44
CLIP1-219ENST00000620786 SKIV2LQ15477 1246 aaKnown RBP12.33□□□□□ -0.44
CLIP1-219ENST00000620786 RAB44Q7Z6P3 723 aaPredicted RBP12.33□□□□□ -0.44
CLIP1-219ENST00000620786 GRAMD1CQ8IYS0 662 aa12.33□□□□□ -0.44
CLIP1-219ENST00000620786 CACNA2D3Q8IZS8 1091 aa12.33□□□□□ -0.44
CLIP1-219ENST00000620786 GDAP1Q8TB36 358 aa12.33□□□□□ -0.44
CLIP1-219ENST00000620786 TBRG4Q969Z0 631 aaKnown RBP eCLIP12.33□□□□□ -0.44
CLIP1-219ENST00000620786 RNF146Q9NTX7 359 aa12.33□□□□□ -0.44
CLIP1-219ENST00000620786 A0A1W2PQ27 194 aa12.33□□□□□ -0.44
CLIP1-219ENST00000620786 A0A1W2PQ64 194 aa12.33□□□□□ -0.44
CLIP1-219ENST00000620786 A0A1W2PQD8 194 aa12.33□□□□□ -0.44
CLIP1-219ENST00000620786 DPYSL4O14531 572 aa12.33□□□□□ -0.44
CLIP1-219ENST00000620786 SPP2Q13103 211 aa12.33□□□□□ -0.44
CLIP1-219ENST00000620786 PRDM5Q9NQX1 630 aaPredicted RBP12.33□□□□□ -0.44
CLIP1-219ENST00000620786 SH3GLB2Q9NR46 395 aa12.33□□□□□ -0.44
CLIP1-219ENST00000620786 TMEM63CQ9P1W3 806 aa12.33□□□□□ -0.44
CLIP1-219ENST00000620786 PPP2R2CQ9Y2T4 447 aa12.33□□□□□ -0.44
CLIP1-219ENST00000620786 PHKA2P46019 1235 aa12.33□□□□□ -0.44
CLIP1-219ENST00000620786 TNFAIP2Q03169 654 aa12.33□□□□□ -0.44
CLIP1-219ENST00000620786 THNSL1Q8IYQ7 743 aa12.33□□□□□ -0.44
CLIP1-219ENST00000620786 DCLK2Q8N568 766 aa12.33□□□□□ -0.44
CLIP1-219ENST00000620786 GDAP1L1Q96MZ0 367 aa12.33□□□□□ -0.44
CLIP1-219ENST00000620786 RUNDC3BQ96NL0 473 aa12.33□□□□□ -0.44
CLIP1-219ENST00000620786 TMEM106CQ9BVX2 250 aa12.33□□□□□ -0.44
CLIP1-219ENST00000620786 KCNH4Q9UQ05 1017 aa12.33□□□□□ -0.44
CLIP1-219ENST00000620786 GFPT2O94808 682 aa12.33□□□□□ -0.44
CLIP1-219ENST00000620786 CDC25AP30304 524 aa12.33□□□□□ -0.44
CLIP1-219ENST00000620786 LMNB2Q03252 620 aa12.33□□□□□ -0.44
CLIP1-219ENST00000620786 SP8Q8IXZ3 490 aa12.33□□□□□ -0.44
CLIP1-219ENST00000620786 NSUN6Q8TEA1 469 aaKnown RBP12.33□□□□□ -0.44
CLIP1-219ENST00000620786 ZNF302Q9NR11 478 aa12.33□□□□□ -0.44
CLIP1-219ENST00000620786 POLR3EQ9NVU0 708 aa12.33□□□□□ -0.44
CLIP1-219ENST00000620786 ADCY10Q96PN6 1610 aa12.33□□□□□ -0.44
CLIP1-219ENST00000620786 MCF2LO15068 1137 aa12.32□□□□□ -0.44
CLIP1-219ENST00000620786 PRPSAP2O60256 369 aa12.32□□□□□ -0.44
CLIP1-219ENST00000620786 MXI1P50539 228 aa12.32□□□□□ -0.44
CLIP1-219ENST00000620786 PRELPP51888 382 aa12.32□□□□□ -0.44
CLIP1-219ENST00000620786 MAN2A1Q16706 1144 aa12.32□□□□□ -0.44
CLIP1-219ENST00000620786 ARHGEF18Q6ZSZ5 1173 aa12.32□□□□□ -0.44
CLIP1-219ENST00000620786 VCXQ9H320 206 aa12.32□□□□□ -0.44
CLIP1-219ENST00000620786 VCX3BQ9H321 246 aa12.32□□□□□ -0.44
CLIP1-219ENST00000620786 ELP3Q9H9T3 547 aa12.32□□□□□ -0.44
CLIP1-219ENST00000620786 A0A0G2JLW4 131 aa12.32□□□□□ -0.44
CLIP1-219ENST00000620786 KRT3P12035 628 aa12.32□□□□□ -0.44
CLIP1-219ENST00000620786 IFNAR1P17181 557 aa12.32□□□□□ -0.44
CLIP1-219ENST00000620786 ARL13BQ3SXY8 428 aa12.32□□□□□ -0.44
CLIP1-219ENST00000620786 SH2D4BQ5SQS7 431 aa12.32□□□□□ -0.44
CLIP1-219ENST00000620786 RCSD1Q6JBY9 416 aa12.32□□□□□ -0.44
CLIP1-219ENST00000620786 UTYO14607 1347 aa12.32□□□□□ -0.44
CLIP1-219ENST00000620786 EEF1GP26641 437 aaKnown RBP12.32□□□□□ -0.44
CLIP1-219ENST00000620786 EHHADHQ08426 723 aa12.32□□□□□ -0.44
CLIP1-219ENST00000620786 MYLK4Q86YV6 388 aaPredicted RBP12.32□□□□□ -0.44
CLIP1-219ENST00000620786 DNAAF3Q8N9W5 541 aa12.32□□□□□ -0.44
CLIP1-219ENST00000620786 STAG1Q8WVM7 1258 aa12.32□□□□□ -0.44
CLIP1-219ENST00000620786 OGFRQ9NZT2 677 aa12.32□□□□□ -0.44
CLIP1-219ENST00000620786 PSMD2Q13200 908 aa12.32□□□□□ -0.44
CLIP1-219ENST00000620786 SEPT6Q14141 434 aa12.32□□□□□ -0.44
CLIP1-219ENST00000620786 RNF219Q5W0B1 726 aaPredicted RBP12.32□□□□□ -0.44
CLIP1-219ENST00000620786 DARS2Q6PI48 645 aaKnown RBP12.32□□□□□ -0.44
CLIP1-219ENST00000620786 FASTKD5Q7L8L6 764 aaKnown RBP12.32□□□□□ -0.44
CLIP1-219ENST00000620786 DGKHQ86XP1 1220 aa12.32□□□□□ -0.44
CLIP1-219ENST00000620786 EFCAB13Q8IY85 973 aa12.32□□□□□ -0.44
CLIP1-219ENST00000620786 MCUQ8NE86 351 aa12.32□□□□□ -0.44
CLIP1-219ENST00000620786 UHMK1Q8TAS1 419 aaKnown RBP12.32□□□□□ -0.44
CLIP1-219ENST00000620786 STRBPQ96SI9 672 aaKnown RBP12.32□□□□□ -0.44
CLIP1-219ENST00000620786 ABCF3Q9NUQ8 709 aa12.32□□□□□ -0.44
CLIP1-219ENST00000620786 SFI1A8K8P3 1242 aa12.32□□□□□ -0.44
CLIP1-219ENST00000620786 LDHAP00338 332 aaKnown RBP12.32□□□□□ -0.44
CLIP1-219ENST00000620786 THOC5Q13769 683 aaKnown RBP12.32□□□□□ -0.44
CLIP1-219ENST00000620786 KRT33BQ14525 404 aa12.32□□□□□ -0.44
CLIP1-219ENST00000620786 ANKRD13CQ8N6S4 541 aa12.32□□□□□ -0.44
CLIP1-219ENST00000620786 OSBPL3Q9H4L5 887 aa12.32□□□□□ -0.44
CLIP1-219ENST00000620786 MRPL47Q9HD33 250 aaKnown RBP12.32□□□□□ -0.44
CLIP1-219ENST00000620786 CDHR2Q9BYE9 1310 aa12.31□□□□□ -0.44
CLIP1-219ENST00000620786 CYP2E1P05181 493 aaPredicted RBP12.31□□□□□ -0.44
CLIP1-219ENST00000620786 CASP14P31944 242 aa12.31□□□□□ -0.44
CLIP1-219ENST00000620786 SNX1Q13596 522 aa12.31□□□□□ -0.44
CLIP1-219ENST00000620786 NFIXQ14938 502 aa12.31□□□□□ -0.44
CLIP1-219ENST00000620786 FAM133AQ8N9E0 248 aa12.31□□□□□ -0.44
CLIP1-219ENST00000620786 PIGOQ8TEQ8 1089 aa12.31□□□□□ -0.44
CLIP1-219ENST00000620786 ATP6V1E2Q96A05 226 aa12.31□□□□□ -0.44
CLIP1-219ENST00000620786 PCDHA5Q9Y5H7 936 aa12.31□□□□□ -0.44
CLIP1-219ENST00000620786 CLGNO14967 610 aa12.31□□□□□ -0.44
CLIP1-219ENST00000620786 RNF40O75150 1001 aa12.31□□□□□ -0.44
CLIP1-219ENST00000620786 CPP00450 1065 aa12.31□□□□□ -0.44
CLIP1-219ENST00000620786 MYL1P05976 194 aa12.31□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms