RNA–Protein interactions for RNA: ENST00000614932.1

VPS39-214, Transcript of VPS39, HOPS complex subunit, humanhuman

Gene VPS39, Length 2,835 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-214ENST00000614932 ABCC12Q96J65 1359 aa11.15□□□□□ -0.62
VPS39-214ENST00000614932 A0A1B0GTH6 734 aa11.15□□□□□ -0.62
VPS39-214ENST00000614932 DRD4P21917 467 aa11.15□□□□□ -0.62
VPS39-214ENST00000614932 KCNJ2P63252 427 aa11.15□□□□□ -0.62
VPS39-214ENST00000614932 LACTBP83111 547 aaPredicted RBP11.15□□□□□ -0.62
VPS39-214ENST00000614932 EZH2Q15910 746 aaKnown RBP11.15□□□□□ -0.62
VPS39-214ENST00000614932 FOXB2Q5VYV0 432 aa11.15□□□□□ -0.62
VPS39-214ENST00000614932 APOA5Q6Q788 366 aa11.15□□□□□ -0.62
VPS39-214ENST00000614932 CCDC65Q8IXS2 484 aa11.15□□□□□ -0.62
VPS39-214ENST00000614932 CTNNBL1Q8WYA6 563 aaPredicted RBP11.15□□□□□ -0.62
VPS39-214ENST00000614932 PPP2R3CQ969Q6 453 aa11.15□□□□□ -0.62
VPS39-214ENST00000614932 GPR101Q96P66 508 aaPredicted RBP11.15□□□□□ -0.62
VPS39-214ENST00000614932 ALG1Q9BT22 464 aa11.15□□□□□ -0.62
VPS39-214ENST00000614932 SCOCQ9UIL1 159 aa11.15□□□□□ -0.62
VPS39-214ENST00000614932 USP21Q9UK80 565 aa11.15□□□□□ -0.62
VPS39-214ENST00000614932 NFE2L3Q9Y4A8 694 aa11.15□□□□□ -0.62
VPS39-214ENST00000614932 SPEF2Q9C093 1822 aa11.15□□□□□ -0.62
VPS39-214ENST00000614932 GOLGA8AA7E2F4 631 aa11.15□□□□□ -0.62
VPS39-214ENST00000614932 SH2B2O14492 632 aaPredicted RBP11.15□□□□□ -0.62
VPS39-214ENST00000614932 BCRP11274 1271 aa11.15□□□□□ -0.62
VPS39-214ENST00000614932 PFKFB1P16118 471 aa11.15□□□□□ -0.62
VPS39-214ENST00000614932 VAV2P52735 878 aa11.15□□□□□ -0.62
VPS39-214ENST00000614932 PLOD1Q02809 727 aaPredicted RBP11.15□□□□□ -0.62
VPS39-214ENST00000614932 CLPPQ16740 277 aaPredicted RBP11.15□□□□□ -0.62
VPS39-214ENST00000614932 BARGINQ6ZT62 677 aa11.15□□□□□ -0.62
VPS39-214ENST00000614932 ARHGAP18Q8N392 663 aa11.15□□□□□ -0.62
VPS39-214ENST00000614932 ZNF512BQ96KM6 892 aaPredicted RBP11.15□□□□□ -0.62
VPS39-214ENST00000614932 SLC26A6Q9BXS9 759 aa11.15□□□□□ -0.62
VPS39-214ENST00000614932 CARD9Q9H257 536 aa11.15□□□□□ -0.62
VPS39-214ENST00000614932 STIM2Q9P246 746 aa11.15□□□□□ -0.62
VPS39-214ENST00000614932 CCNL1Q9UK58 526 aaPredicted RBP11.15□□□□□ -0.62
VPS39-214ENST00000614932 MINPP1Q9UNW1 487 aa11.15□□□□□ -0.62
VPS39-214ENST00000614932 PHF20L1A8MW92 1017 aa11.14□□□□□ -0.63
VPS39-214ENST00000614932 E7ENQ6 273 aa11.14□□□□□ -0.63
VPS39-214ENST00000614932 BACH1O14867 736 aa11.14□□□□□ -0.63
VPS39-214ENST00000614932 ORC4O43929 436 aa11.14□□□□□ -0.63
VPS39-214ENST00000614932 SUPT3HO75486 399 aa11.14□□□□□ -0.63
VPS39-214ENST00000614932 GUCY1A2P33402 732 aa11.14□□□□□ -0.63
VPS39-214ENST00000614932 TRPC1P48995 793 aa11.14□□□□□ -0.63
VPS39-214ENST00000614932 ITIH3Q06033 890 aa11.14□□□□□ -0.63
VPS39-214ENST00000614932 RUFY4Q6ZNE9 571 aa11.14□□□□□ -0.63
VPS39-214ENST00000614932 MFSD6Q6ZSS7 791 aa11.14□□□□□ -0.63
VPS39-214ENST00000614932 MREGQ8N565 214 aa11.14□□□□□ -0.63
VPS39-214ENST00000614932 FBF1Q8TES7 1133 aa11.14□□□□□ -0.63
VPS39-214ENST00000614932 PTPRN2Q92932 1015 aa11.14□□□□□ -0.63
VPS39-214ENST00000614932 AZIN2Q96A70 460 aa11.14□□□□□ -0.63
VPS39-214ENST00000614932 HAUS4Q9H6D7 363 aa11.14□□□□□ -0.63
VPS39-214ENST00000614932 TMBIM4Q9HC24 238 aa11.14□□□□□ -0.63
VPS39-214ENST00000614932 CTNNAL1Q9UBT7 734 aa11.14□□□□□ -0.63
VPS39-214ENST00000614932 TMED5Q9Y3A6 229 aa11.14□□□□□ -0.63
VPS39-214ENST00000614932 ZMYM6O95789 1325 aa11.14□□□□□ -0.63
VPS39-214ENST00000614932 ANKRD36CQ5JPF3 1778 aa11.14□□□□□ -0.63
VPS39-214ENST00000614932 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP11.14□□□□□ -0.63
VPS39-214ENST00000614932 F8W031 263 aaPredicted RBP11.14□□□□□ -0.63
VPS39-214ENST00000614932 ZBTB43O43298 467 aa11.14□□□□□ -0.63
VPS39-214ENST00000614932 ZPR1O75312 459 aa11.14□□□□□ -0.63
VPS39-214ENST00000614932 WFS1O76024 890 aa11.14□□□□□ -0.63
VPS39-214ENST00000614932 HNRNPCP07910 306 aaKnown RBP eCLIP11.14□□□□□ -0.63
VPS39-214ENST00000614932 ACADSP16219 412 aa11.14□□□□□ -0.63
VPS39-214ENST00000614932 GNAZP19086 355 aa11.14□□□□□ -0.63
VPS39-214ENST00000614932 CMA1P23946 247 aa11.14□□□□□ -0.63
VPS39-214ENST00000614932 CASP14P31944 242 aa11.14□□□□□ -0.63
VPS39-214ENST00000614932 GBP1P32455 592 aa11.14□□□□□ -0.63
VPS39-214ENST00000614932 HOXD12P35452 270 aa11.14□□□□□ -0.63
VPS39-214ENST00000614932 ERVK-24P63145 666 aa11.14□□□□□ -0.63
VPS39-214ENST00000614932 PDE4BQ07343 736 aa11.14□□□□□ -0.63
VPS39-214ENST00000614932 ITIH4Q14624 930 aa11.14□□□□□ -0.63
VPS39-214ENST00000614932 IRGCQ6NXR0 463 aa11.14□□□□□ -0.63
VPS39-214ENST00000614932 CYP26C1Q6V0L0 522 aa11.14□□□□□ -0.63
VPS39-214ENST00000614932 TXNRD3Q86VQ6 643 aa11.14□□□□□ -0.63
VPS39-214ENST00000614932 LONP2Q86WA8 852 aa11.14□□□□□ -0.63
VPS39-214ENST00000614932 IGDCC4Q8TDY8 1250 aa11.14□□□□□ -0.63
VPS39-214ENST00000614932 NCSTNQ92542 709 aa11.14□□□□□ -0.63
VPS39-214ENST00000614932 SETDB2Q96T68 719 aa11.14□□□□□ -0.63
VPS39-214ENST00000614932 LY9Q9HBG7 655 aa11.14□□□□□ -0.63
VPS39-214ENST00000614932 SPTLC2O15270 562 aa11.13□□□□□ -0.63
VPS39-214ENST00000614932 RANBP6O60518 1105 aaKnown RBP11.13□□□□□ -0.63
VPS39-214ENST00000614932 YEATS4O95619 227 aa11.13□□□□□ -0.63
VPS39-214ENST00000614932 MLH1P40692 756 aa11.13□□□□□ -0.63
VPS39-214ENST00000614932 FAM133BQ5BKY9 247 aaKnown RBP11.13□□□□□ -0.63
VPS39-214ENST00000614932 NANOGNBQ7Z5D8 188 aa11.13□□□□□ -0.63
VPS39-214ENST00000614932 FNBP4Q8N3X1 1017 aaPredicted RBP11.13□□□□□ -0.63
VPS39-214ENST00000614932 DDX25Q9UHL0 483 aaKnown RBP11.13□□□□□ -0.63
VPS39-214ENST00000614932 SLC12A7Q9Y666 1083 aa11.13□□□□□ -0.63
VPS39-214ENST00000614932 A8MUI8 341 aa11.13□□□□□ -0.63
VPS39-214ENST00000614932 IGF2BP3O00425 579 aaKnown RBP eCLIP11.13□□□□□ -0.63
VPS39-214ENST00000614932 ZNF185O15231 689 aa11.13□□□□□ -0.63
VPS39-214ENST00000614932 TEX33O43247 280 aa11.13□□□□□ -0.63
VPS39-214ENST00000614932 HNRNPRO43390 633 aaKnown RBP11.13□□□□□ -0.63
VPS39-214ENST00000614932 TMOD1P28289 359 aa11.13□□□□□ -0.63
VPS39-214ENST00000614932 SH3BGRP55822 239 aaPredicted RBP11.13□□□□□ -0.63
VPS39-214ENST00000614932 MCL1Q07820 350 aa11.13□□□□□ -0.63
VPS39-214ENST00000614932 PNOCQ13519 176 aa11.13□□□□□ -0.63
VPS39-214ENST00000614932 MAP7D1Q3KQU3 841 aa11.13□□□□□ -0.63
VPS39-214ENST00000614932 USH1GQ495M9 461 aa11.13□□□□□ -0.63
VPS39-214ENST00000614932 ENOX1Q8TC92 643 aaKnown RBP11.13□□□□□ -0.63
VPS39-214ENST00000614932 RMND1Q9NWS8 449 aa11.13□□□□□ -0.63
VPS39-214ENST00000614932 TRIM10Q9UDY6 481 aa11.13□□□□□ -0.63
VPS39-214ENST00000614932 KCNJ14Q9UNX9 436 aa11.13□□□□□ -0.63
VPS39-214ENST00000614932 AGAP1Q9UPQ3 857 aa11.13□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms