RNA–Protein interactions for RNA: ENST00000612273.1

COL6A1-207, Transcript of collagen type VI alpha 1 chain, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene COL6A1, Length 3,251 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1-207ENST00000612273 DDX47Q9H0S4 455 aaKnown RBP15.45■□□□□ 0.06
COL6A1-207ENST00000612273 USP40Q9NVE5 1235 aa15.45■□□□□ 0.06
COL6A1-207ENST00000612273 PCDHA1Q9Y5I3 950 aa15.45■□□□□ 0.06
COL6A1-207ENST00000612273 FAM169AQ9Y6X4 670 aa15.45■□□□□ 0.06
COL6A1-207ENST00000612273 XIRP1Q702N8 1843 aaKnown RBP15.45■□□□□ 0.06
COL6A1-207ENST00000612273 GPR75-ASB3A0A0A6YYF3 556 aa15.45■□□□□ 0.06
COL6A1-207ENST00000612273 RAD51CO43502 376 aa15.45■□□□□ 0.06
COL6A1-207ENST00000612273 HOXA13P31271 388 aaPredicted RBP15.45■□□□□ 0.06
COL6A1-207ENST00000612273 COPB2P35606 906 aa15.45■□□□□ 0.06
COL6A1-207ENST00000612273 UBXN2AP68543 259 aa15.45■□□□□ 0.06
COL6A1-207ENST00000612273 ASIC2Q16515 512 aa15.45■□□□□ 0.06
COL6A1-207ENST00000612273 SCFD1Q8WVM8 642 aa15.45■□□□□ 0.06
COL6A1-207ENST00000612273 CUL5Q93034 780 aa15.45■□□□□ 0.06
COL6A1-207ENST00000612273 SNED1Q8TER0 1413 aa15.45■□□□□ 0.06
COL6A1-207ENST00000612273 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP15.44■□□□□ 0.06
COL6A1-207ENST00000612273 ATP2C2O75185 946 aa15.44■□□□□ 0.06
COL6A1-207ENST00000612273 ABCB4P21439 1286 aa15.44■□□□□ 0.06
COL6A1-207ENST00000612273 NFIAQ12857 509 aa15.44■□□□□ 0.06
COL6A1-207ENST00000612273 ZFPM1Q8IX07 1006 aa15.44■□□□□ 0.06
COL6A1-207ENST00000612273 RDH13Q8NBN7 331 aa15.44■□□□□ 0.06
COL6A1-207ENST00000612273 CASKIN2Q8WXE0 1202 aa15.44■□□□□ 0.06
COL6A1-207ENST00000612273 RIOX1Q9H6W3 641 aa15.44■□□□□ 0.06
COL6A1-207ENST00000612273 PPANQ9NQ55 473 aaKnown RBP15.44■□□□□ 0.06
COL6A1-207ENST00000612273 OPA1O60313 960 aa15.44■□□□□ 0.06
COL6A1-207ENST00000612273 MED24O75448 989 aa15.44■□□□□ 0.06
COL6A1-207ENST00000612273 MAGEA9P43362 315 aa15.44■□□□□ 0.06
COL6A1-207ENST00000612273 PPFIA1Q13136 1202 aa15.44■□□□□ 0.06
COL6A1-207ENST00000612273 RNF187Q5TA31 235 aaPredicted RBP15.44■□□□□ 0.06
COL6A1-207ENST00000612273 PRR5LQ6MZQ0 368 aa15.44■□□□□ 0.06
COL6A1-207ENST00000612273 CCDC65Q8IXS2 484 aa15.44■□□□□ 0.06
COL6A1-207ENST00000612273 IFT20Q8IY31 132 aa15.44■□□□□ 0.06
COL6A1-207ENST00000612273 ATP6V0A2Q9Y487 856 aa15.44■□□□□ 0.06
COL6A1-207ENST00000612273 SERPING1P05155 500 aa15.44■□□□□ 0.06
COL6A1-207ENST00000612273 CASP4P49662 377 aa15.44■□□□□ 0.06
COL6A1-207ENST00000612273 FXR2P51116 673 aaKnown RBP eCLIP15.44■□□□□ 0.06
COL6A1-207ENST00000612273 CORO7P57737 925 aa15.44■□□□□ 0.06
COL6A1-207ENST00000612273 MKRN4PQ13434 485 aaPredicted RBP15.44■□□□□ 0.06
COL6A1-207ENST00000612273 TBC1D10BQ4KMP7 808 aaPredicted RBP15.44■□□□□ 0.06
COL6A1-207ENST00000612273 SPICE1Q8N0Z3 855 aa15.44■□□□□ 0.06
COL6A1-207ENST00000612273 CYP2W1Q8TAV3 490 aa15.44■□□□□ 0.06
COL6A1-207ENST00000612273 RNPC3Q96LT9 517 aaKnown RBP15.44■□□□□ 0.06
COL6A1-207ENST00000612273 CHORDC1Q9UHD1 332 aaPredicted RBP15.44■□□□□ 0.06
COL6A1-207ENST00000612273 ARAP2Q8WZ64 1704 aa15.44■□□□□ 0.06
COL6A1-207ENST00000612273 H0YHG0 523 aa15.43■□□□□ 0.06
COL6A1-207ENST00000612273 MRPL12P52815 198 aaKnown RBP15.43■□□□□ 0.06
COL6A1-207ENST00000612273 ODF2Q5BJF6 829 aa15.43■□□□□ 0.06
COL6A1-207ENST00000612273 PIGOQ8TEQ8 1089 aa15.43■□□□□ 0.06
COL6A1-207ENST00000612273 DPH5Q9H2P9 285 aa15.43■□□□□ 0.06
COL6A1-207ENST00000612273 SERPINB13Q9UIV8 391 aa15.43■□□□□ 0.06
COL6A1-207ENST00000612273 A0A1B0GUL6 1792 aa15.43■□□□□ 0.06
COL6A1-207ENST00000612273 HNRNPH3P31942 346 aaKnown RBP15.43■□□□□ 0.06
COL6A1-207ENST00000612273 CDK17Q00537 523 aa15.43■□□□□ 0.06
COL6A1-207ENST00000612273 MAEAQ7L5Y9 396 aa15.43■□□□□ 0.06
COL6A1-207ENST00000612273 SFR1Q86XK3 245 aa15.43■□□□□ 0.06
COL6A1-207ENST00000612273 CEP72Q9P209 647 aa15.43■□□□□ 0.06
COL6A1-207ENST00000612273 PNMA6FA0A0J9YX94 578 aa15.42■□□□□ 0.06
COL6A1-207ENST00000612273 ZNF233A6NK53 670 aa15.42■□□□□ 0.06
COL6A1-207ENST00000612273 ZBTB39O15060 712 aa15.42■□□□□ 0.06
COL6A1-207ENST00000612273 CETN3O15182 167 aa15.42■□□□□ 0.06
COL6A1-207ENST00000612273 MYBP10242 640 aa15.42■□□□□ 0.06
COL6A1-207ENST00000612273 PPP1R2P41236 205 aa15.42■□□□□ 0.06
COL6A1-207ENST00000612273 ZNF543Q08ER8 600 aa15.42■□□□□ 0.06
COL6A1-207ENST00000612273 RPS6KA1Q15418 735 aa15.42■□□□□ 0.06
COL6A1-207ENST00000612273 ASTE1Q2TB18 679 aaPredicted RBP15.42■□□□□ 0.06
COL6A1-207ENST00000612273 RGL1Q9NZL6 768 aa15.42■□□□□ 0.06
COL6A1-207ENST00000612273 HDAC9Q9UKV0 1011 aa15.42■□□□□ 0.06
COL6A1-207ENST00000612273 THRAP3Q9Y2W1 955 aaKnown RBP15.42■□□□□ 0.06
COL6A1-207ENST00000612273 GRID2IPA4D2P6 1211 aa15.42■□□□□ 0.06
COL6A1-207ENST00000612273 SMIM23A6NLE4 172 aa15.42■□□□□ 0.06
COL6A1-207ENST00000612273 TTLL1O95922 423 aa15.42■□□□□ 0.06
COL6A1-207ENST00000612273 RIC8AQ9NPQ8 531 aa15.42■□□□□ 0.06
COL6A1-207ENST00000612273 KCNQ5Q9NR82 932 aa15.42■□□□□ 0.06
COL6A1-207ENST00000612273 GDF11O95390 407 aa15.42■□□□□ 0.06
COL6A1-207ENST00000612273 ITGA4P13612 1032 aa15.42■□□□□ 0.06
COL6A1-207ENST00000612273 CYP11B2P19099 503 aa15.42■□□□□ 0.06
COL6A1-207ENST00000612273 SLC18A3Q16572 532 aa15.42■□□□□ 0.06
COL6A1-207ENST00000612273 QRICH1Q2TAL8 776 aa15.42■□□□□ 0.06
COL6A1-207ENST00000612273 ZNF571Q7Z3V5 609 aaPredicted RBP15.42■□□□□ 0.06
COL6A1-207ENST00000612273 UBLCP1Q8WVY7 318 aaPredicted RBP15.42■□□□□ 0.06
COL6A1-207ENST00000612273 CELF4Q9BZC1 486 aaKnown RBP15.42■□□□□ 0.06
COL6A1-207ENST00000612273 EIF3HO15372 352 aaKnown RBP eCLIP15.41■□□□□ 0.062e-6■■■□□ 15.9
COL6A1-207ENST00000612273 GCNT3O95395 438 aa15.41■□□□□ 0.06
COL6A1-207ENST00000612273 KIAA0825Q8IV33 1275 aa15.41■□□□□ 0.06
COL6A1-207ENST00000612273 MSL3Q8N5Y2 521 aaKnown RBP15.41■□□□□ 0.06
COL6A1-207ENST00000612273 UHMK1Q8TAS1 419 aaKnown RBP15.41■□□□□ 0.06
COL6A1-207ENST00000612273 TBC1D16Q8TBP0 767 aa15.41■□□□□ 0.06
COL6A1-207ENST00000612273 U2AF1L4Q8WU68 220 aaKnown RBP15.41■□□□□ 0.06
COL6A1-207ENST00000612273 BHMT2Q9H2M3 363 aa15.41■□□□□ 0.06
COL6A1-207ENST00000612273 ARMCX3Q9UH62 379 aaPredicted RBP15.41■□□□□ 0.06
COL6A1-207ENST00000612273 AMACRQ9UHK6 382 aa15.41■□□□□ 0.06
COL6A1-207ENST00000612273 PLAAQ9Y263 795 aa15.41■□□□□ 0.06
COL6A1-207ENST00000612273 NHSL1Q5SYE7 1610 aa15.41■□□□□ 0.06
COL6A1-207ENST00000612273 GFPT2O94808 682 aa15.41■□□□□ 0.06
COL6A1-207ENST00000612273 PAK2Q13177 524 aa15.41■□□□□ 0.06
COL6A1-207ENST00000612273 EMBQ6PCB8 327 aa15.41■□□□□ 0.06
COL6A1-207ENST00000612273 ZNF662Q6ZS27 426 aa15.41■□□□□ 0.06
COL6A1-207ENST00000612273 LUC7LQ9NQ29 371 aaKnown RBP15.41■□□□□ 0.06
COL6A1-207ENST00000612273 GOLGA8KD6RF30 607 aa15.41■□□□□ 0.06
COL6A1-207ENST00000612273 ERLIN2O94905 339 aa15.41■□□□□ 0.06
COL6A1-207ENST00000612273 PLCG2P16885 1265 aa15.41■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms