RNA–Protein interactions for RNA: ENST00000611852.4

CCDC28A-202, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,505 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-202ENST00000611852 LRCH2Q5VUJ6 765 aa18.72■□□□□ 0.59
CCDC28A-202ENST00000611852 TRIM50Q86XT4 487 aa18.72■□□□□ 0.59
CCDC28A-202ENST00000611852 POTEDQ86YR6 584 aa18.72■□□□□ 0.59
CCDC28A-202ENST00000611852 C7orf61Q8IZ16 206 aa18.72■□□□□ 0.59
CCDC28A-202ENST00000611852 TOX2Q96NM4 488 aa18.72■□□□□ 0.59
CCDC28A-202ENST00000611852 KATNAL1Q9BW62 490 aa18.72■□□□□ 0.59
CCDC28A-202ENST00000611852 MROH7Q68CQ1 1323 aa18.71■□□□□ 0.59
CCDC28A-202ENST00000611852 H3BRB1 525 aa18.71■□□□□ 0.59
CCDC28A-202ENST00000611852 TBX3O15119 743 aa18.71■□□□□ 0.59
CCDC28A-202ENST00000611852 PQBP1O60828 265 aaKnown RBP18.71■□□□□ 0.59
CCDC28A-202ENST00000611852 ATP2B1P20020 1258 aa18.71■□□□□ 0.59
CCDC28A-202ENST00000611852 SYT1P21579 422 aa18.71■□□□□ 0.59
CCDC28A-202ENST00000611852 CHMP4BP1P59074 171 aa18.71■□□□□ 0.59
CCDC28A-202ENST00000611852 KRT76Q01546 638 aa18.71■□□□□ 0.59
CCDC28A-202ENST00000611852 MFSD10Q14728 455 aa18.71■□□□□ 0.59
CCDC28A-202ENST00000611852 KIAA0753Q2KHM9 967 aa18.71■□□□□ 0.59
CCDC28A-202ENST00000611852 ZNF746Q6NUN9 644 aaPredicted RBP18.71■□□□□ 0.59
CCDC28A-202ENST00000611852 NFRKBQ6P4R8 1299 aa18.71■□□□□ 0.59
CCDC28A-202ENST00000611852 ABHD15Q6UXT9 468 aa18.71■□□□□ 0.59
CCDC28A-202ENST00000611852 FAM126BQ8IXS8 530 aa18.71■□□□□ 0.59
CCDC28A-202ENST00000611852 PPP1R13LQ8WUF5 828 aa18.71■□□□□ 0.59
CCDC28A-202ENST00000611852 HAS1Q92839 578 aa18.71■□□□□ 0.59
CCDC28A-202ENST00000611852 FAM20AQ96MK3 541 aa18.71■□□□□ 0.59
CCDC28A-202ENST00000611852 TUT1Q9H6E5 874 aaKnown RBP18.71■□□□□ 0.59
CCDC28A-202ENST00000611852 LGR5O75473 907 aa18.7■□□□□ 0.58
CCDC28A-202ENST00000611852 HSP90AA1P07900 732 aaKnown RBP18.7■□□□□ 0.58
CCDC28A-202ENST00000611852 TRAPPC10P48553 1259 aa18.7■□□□□ 0.58
CCDC28A-202ENST00000611852 SMAP1Q8IYB5 467 aaPredicted RBP18.7■□□□□ 0.58
CCDC28A-202ENST00000611852 PCYT2Q99447 389 aa18.7■□□□□ 0.58
CCDC28A-202ENST00000611852 TEKT3Q9BXF9 490 aa18.7■□□□□ 0.58
CCDC28A-202ENST00000611852 TCEAL9Q9UHQ7 104 aa18.7■□□□□ 0.58
CCDC28A-202ENST00000611852 EMSYQ7Z589 1322 aa18.7■□□□□ 0.58
CCDC28A-202ENST00000611852 IGKV6D-21A0A0A0MT36 114 aa18.69■□□□□ 0.58
CCDC28A-202ENST00000611852 VPS37CA5D8V6 355 aaPredicted RBP18.69■□□□□ 0.58
CCDC28A-202ENST00000611852 DCDC2CA8MYV0 355 aa18.69■□□□□ 0.58
CCDC28A-202ENST00000611852 NEMFO60524 1076 aa18.69■□□□□ 0.58
CCDC28A-202ENST00000611852 TOB1P50616 345 aaPredicted RBP18.69■□□□□ 0.58
CCDC28A-202ENST00000611852 PTPN11Q06124 597 aaPredicted RBP18.69■□□□□ 0.58
CCDC28A-202ENST00000611852 FAM47CQ5HY64 1035 aa18.69■□□□□ 0.58
CCDC28A-202ENST00000611852 B3GNT9Q6UX72 402 aa18.69■□□□□ 0.58
CCDC28A-202ENST00000611852 SESTD1Q86VW0 696 aa18.69■□□□□ 0.58
CCDC28A-202ENST00000611852 SMARCAD1Q9H4L7 1026 aa18.69■□□□□ 0.58
CCDC28A-202ENST00000611852 ZNF215Q9UL58 517 aaPredicted RBP18.69■□□□□ 0.58
CCDC28A-202ENST00000611852 NOL7Q9UMY1 257 aaKnown RBP18.69■□□□□ 0.58
CCDC28A-202ENST00000611852 NR2E3Q9Y5X4 410 aa18.69■□□□□ 0.58
CCDC28A-202ENST00000611852 CD4P01730 458 aa18.69■□□□□ 0.58
CCDC28A-202ENST00000611852 SUPT20HL2P0C7V6 817 aa18.69■□□□□ 0.58
CCDC28A-202ENST00000611852 MCM7P33993 719 aa18.69■□□□□ 0.58
CCDC28A-202ENST00000611852 FAAP100Q0VG06 881 aa18.69■□□□□ 0.58
CCDC28A-202ENST00000611852 TTC38Q5R3I4 469 aa18.69■□□□□ 0.58
CCDC28A-202ENST00000611852 MIS18BP1Q6P0N0 1132 aa18.69■□□□□ 0.58
CCDC28A-202ENST00000611852 GLG1Q92896 1179 aa18.69■□□□□ 0.58
CCDC28A-202ENST00000611852 UNC45AQ9H3U1 944 aa18.69■□□□□ 0.58
CCDC28A-202ENST00000611852 AZI2Q9H6S1 392 aa18.69■□□□□ 0.58
CCDC28A-202ENST00000611852 PCDHA10Q9Y5I2 948 aa18.69■□□□□ 0.58
CCDC28A-202ENST00000611852 WDR64B1ANS9 1081 aa18.68■□□□□ 0.58
CCDC28A-202ENST00000611852 CHMP2AO43633 222 aa18.68■□□□□ 0.58
CCDC28A-202ENST00000611852 B4GALT4O60513 344 aa18.68■□□□□ 0.58
CCDC28A-202ENST00000611852 CLTBP09497 229 aa18.68■□□□□ 0.58
CCDC28A-202ENST00000611852 ORC2Q13416 577 aaPredicted RBP18.68■□□□□ 0.58
CCDC28A-202ENST00000611852 NBR1Q14596 966 aa18.68■□□□□ 0.58
CCDC28A-202ENST00000611852 ZNF174Q15697 407 aa18.68■□□□□ 0.58
CCDC28A-202ENST00000611852 CALCRLQ16602 461 aa18.68■□□□□ 0.58
CCDC28A-202ENST00000611852 SLFN12Q8IYM2 578 aa18.68■□□□□ 0.58
CCDC28A-202ENST00000611852 C7orf31Q8N865 590 aa18.68■□□□□ 0.58
CCDC28A-202ENST00000611852 MTMR9Q96QG7 549 aa18.68■□□□□ 0.58
CCDC28A-202ENST00000611852 TRPV6Q9H1D0 765 aa18.68■□□□□ 0.58
CCDC28A-202ENST00000611852 RNPEPQ9H4A4 650 aa18.68■□□□□ 0.58
CCDC28A-202ENST00000611852 PDLIM7Q9NR12 457 aa18.68■□□□□ 0.58
CCDC28A-202ENST00000611852 DISC1Q9NRI5 854 aa18.68■□□□□ 0.58
CCDC28A-202ENST00000611852 TRMT13Q9NUP7 481 aaKnown RBP18.68■□□□□ 0.58
CCDC28A-202ENST00000611852 ERAP1Q9NZ08 941 aa18.68■□□□□ 0.58
CCDC28A-202ENST00000611852 HDAC6Q9UBN7 1215 aa18.68■□□□□ 0.58
CCDC28A-202ENST00000611852 GTF2IRD1Q9UHL9 959 aa18.68■□□□□ 0.58
CCDC28A-202ENST00000611852 VAV3Q9UKW4 847 aa18.68■□□□□ 0.58
CCDC28A-202ENST00000611852 RBM19Q9Y4C8 960 aaKnown RBP18.68■□□□□ 0.58
CCDC28A-202ENST00000611852 CEP290O15078 2479 aa18.68■□□□□ 0.58
CCDC28A-202ENST00000611852 TLR3O15455 904 aaKnown RBP18.67■□□□□ 0.58
CCDC28A-202ENST00000611852 MARCH6O60337 910 aa18.67■□□□□ 0.58
CCDC28A-202ENST00000611852 BAG4O95429 457 aaKnown RBP18.67■□□□□ 0.58
CCDC28A-202ENST00000611852 SFNP31947 248 aa18.67■□□□□ 0.58
CCDC28A-202ENST00000611852 STAT5BP51692 787 aa18.67■□□□□ 0.58
CCDC28A-202ENST00000611852 JAK3P52333 1124 aa18.67■□□□□ 0.58
CCDC28A-202ENST00000611852 PLPPR4Q7Z2D5 763 aa18.67■□□□□ 0.58
CCDC28A-202ENST00000611852 CCDC60Q8IWA6 550 aaPredicted RBP18.67■□□□□ 0.58
CCDC28A-202ENST00000611852 SPRYD3Q8NCJ5 442 aa18.67■□□□□ 0.58
CCDC28A-202ENST00000611852 AFAP1L1Q8TED9 768 aa18.67■□□□□ 0.58
CCDC28A-202ENST00000611852 TMEM60Q9H2L4 133 aa18.67■□□□□ 0.58
CCDC28A-202ENST00000611852 SAMM50Q9Y512 469 aa18.67■□□□□ 0.58
CCDC28A-202ENST00000611852 BACH1O14867 736 aa18.66■□□□□ 0.58
CCDC28A-202ENST00000611852 STX6O43752 255 aa18.66■□□□□ 0.58
CCDC28A-202ENST00000611852 PSAPP07602 524 aa18.66■□□□□ 0.58
CCDC28A-202ENST00000611852 SMIM10L2AP0DMW4 78 aa18.66■□□□□ 0.58
CCDC28A-202ENST00000611852 SMIM10L2BP0DMW5 78 aa18.66■□□□□ 0.58
CCDC28A-202ENST00000611852 MARK3P27448 753 aa18.66■□□□□ 0.58
CCDC28A-202ENST00000611852 PPP2R5CQ13362 524 aa18.66■□□□□ 0.58
CCDC28A-202ENST00000611852 RILPL1Q5EBL4 403 aa18.66■□□□□ 0.58
CCDC28A-202ENST00000611852 FAM160B1Q5W0V3 765 aa18.66■□□□□ 0.58
CCDC28A-202ENST00000611852 GDF6Q6KF10 455 aaPredicted RBP18.66■□□□□ 0.58
CCDC28A-202ENST00000611852 SWSAP1Q6NVH7 229 aa18.66■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms