RNA–Protein interactions for RNA: ENST00000606299.1

CSNK1A1-209, Transcript of casein kinase 1 alpha 1, human

TSL 3 BASIC

Gene CSNK1A1, Length 1,075 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CSNK1A1-209	ENST00000606299	TNIP1	Q15025	636 aa		11.32	□□□□□ -0.6
CSNK1A1-209	ENST00000606299	NOM1	Q5C9Z4	860 aa	Known RBP	11.32	□□□□□ -0.6
CSNK1A1-209	ENST00000606299	IL22RA1	Q8N6P7	574 aa		11.32	□□□□□ -0.6
CSNK1A1-209	ENST00000606299	CEP95	Q96GE4	821 aa		11.32	□□□□□ -0.6
CSNK1A1-209	ENST00000606299	SPATA32	Q96LK8	384 aa		11.32	□□□□□ -0.6
CSNK1A1-209	ENST00000606299	ZNF396	Q96N95	335 aa	Predicted RBP	11.32	□□□□□ -0.6
CSNK1A1-209	ENST00000606299	EHD4	Q9H223	541 aa		11.32	□□□□□ -0.6
CSNK1A1-209	ENST00000606299	DHX36	Q9H2U1	1008 aa	Known RBP	11.32	□□□□□ -0.6
CSNK1A1-209	ENST00000606299	LTBP3	Q9NS15	1303 aa		11.32	□□□□□ -0.6
CSNK1A1-209	ENST00000606299	SMCHD1	A6NHR9	2005 aa		11.31	□□□□□ -0.6
CSNK1A1-209	ENST00000606299	hCG_1642624	A0A1W2PR95	340 aa		11.31	□□□□□ -0.6
CSNK1A1-209	ENST00000606299	KIF28P	B7ZC32	967 aa		11.31	□□□□□ -0.6
CSNK1A1-209	ENST00000606299	DLL1	O00548	723 aa		11.31	□□□□□ -0.6
CSNK1A1-209	ENST00000606299	PRPF3	O43395	683 aa	Known RBP	11.31	□□□□□ -0.6
CSNK1A1-209	ENST00000606299	ENTPD3	O75355	529 aa		11.31	□□□□□ -0.6
CSNK1A1-209	ENST00000606299	TOP1	P11387	765 aa	Known RBP	11.31	□□□□□ -0.6
CSNK1A1-209	ENST00000606299	DEK	P35659	375 aa	Known RBP	11.31	□□□□□ -0.6
CSNK1A1-209	ENST00000606299	UBE2H	P62256	183 aa		11.31	□□□□□ -0.6
CSNK1A1-209	ENST00000606299	KIF23	Q02241	960 aa	Predicted RBP	11.31	□□□□□ -0.6
CSNK1A1-209	ENST00000606299	CEBPZ	Q03701	1054 aa	Known RBP	11.31	□□□□□ -0.6
CSNK1A1-209	ENST00000606299	ZNF438	Q7Z4V0	828 aa		11.31	□□□□□ -0.6
CSNK1A1-209	ENST00000606299	SRBD1	Q8N5C6	995 aa	Known RBP	11.31	□□□□□ -0.6
CSNK1A1-209	ENST00000606299	GTF3C2	Q8WUA4	911 aa	Predicted RBP	11.31	□□□□□ -0.6
CSNK1A1-209	ENST00000606299	PIBF1	Q8WXW3	757 aa		11.31	□□□□□ -0.6
CSNK1A1-209	ENST00000606299	RNF26	Q9BY78	433 aa	Predicted RBP	11.31	□□□□□ -0.6
CSNK1A1-209	ENST00000606299	SCAND2P	Q9GZW5	306 aa	Predicted RBP	11.31	□□□□□ -0.6
CSNK1A1-209	ENST00000606299	ELP3	Q9H9T3	547 aa		11.31	□□□□□ -0.6
CSNK1A1-209	ENST00000606299	VEZT	Q9HBM0	779 aa		11.31	□□□□□ -0.6
CSNK1A1-209	ENST00000606299	PI4KB	Q9UBF8	816 aa		11.31	□□□□□ -0.6
CSNK1A1-209	ENST00000606299	ZNF70	Q9UC06	446 aa	Predicted RBP	11.31	□□□□□ -0.6
CSNK1A1-209	ENST00000606299	CFAP45	Q9UL16	551 aa		11.31	□□□□□ -0.6
CSNK1A1-209	ENST00000606299	SHTN1	A0MZ66	631 aa		11.3	□□□□□ -0.6
CSNK1A1-209	ENST00000606299	SMNDC1	O75940	238 aa	Known RBP eCLIP	11.3	□□□□□ -0.6
CSNK1A1-209	ENST00000606299	EIF6	P56537	245 aa	Known RBP	11.3	□□□□□ -0.6
CSNK1A1-209	ENST00000606299	SAFB	Q15424	915 aa	Known RBP eCLIP	11.3	□□□□□ -0.6
CSNK1A1-209	ENST00000606299	COL13A1	Q5TAT6	717 aa	Predicted RBP	11.3	□□□□□ -0.6
CSNK1A1-209	ENST00000606299	ALKBH2	Q6NS38	261 aa		11.3	□□□□□ -0.6
CSNK1A1-209	ENST00000606299	BRAP	Q7Z569	592 aa		11.3	□□□□□ -0.6
CSNK1A1-209	ENST00000606299	ATCAY	Q86WG3	371 aa		11.3	□□□□□ -0.6
CSNK1A1-209	ENST00000606299	CLEC10A	Q8IUN9	316 aa		11.3	□□□□□ -0.6
CSNK1A1-209	ENST00000606299	LRRC47	Q8N1G4	583 aa	Known RBP	11.3	□□□□□ -0.6
CSNK1A1-209	ENST00000606299	RGS22	Q8NE09	1264 aa		11.3	□□□□□ -0.6
CSNK1A1-209	ENST00000606299	LEO1	Q8WVC0	666 aa	Predicted RBP	11.3	□□□□□ -0.6
CSNK1A1-209	ENST00000606299	SSBP4	Q9BWG4	385 aa	Predicted RBP	11.3	□□□□□ -0.6
CSNK1A1-209	ENST00000606299	KCNJ14	Q9UNX9	436 aa		11.3	□□□□□ -0.6
CSNK1A1-209	ENST00000606299	TRIM33	Q9UPN9	1127 aa		11.3	□□□□□ -0.6
CSNK1A1-209	ENST00000606299	ELP1	O95163	1332 aa		11.3	□□□□□ -0.6
CSNK1A1-209	ENST00000606299	ATRNL1	Q5VV63	1379 aa		11.29	□□□□□ -0.6
CSNK1A1-209	ENST00000606299	GOLGA6L4	A6NEF3	574 aa		11.29	□□□□□ -0.6
CSNK1A1-209	ENST00000606299	MYO1B	O43795	1136 aa		11.29	□□□□□ -0.6
CSNK1A1-209	ENST00000606299	MMP1	P03956	469 aa		11.29	□□□□□ -0.6
CSNK1A1-209	ENST00000606299	PARP1	P09874	1014 aa	Known RBP	11.29	□□□□□ -0.6
CSNK1A1-209	ENST00000606299	XBP1	P17861	261 aa		11.29	□□□□□ -0.6
CSNK1A1-209	ENST00000606299	MZF1	P28698	734 aa	Predicted RBP	11.29	□□□□□ -0.6
CSNK1A1-209	ENST00000606299	GNAQ	P50148	359 aa		11.29	□□□□□ -0.6
CSNK1A1-209	ENST00000606299	PRELP	P51888	382 aa		11.29	□□□□□ -0.6
CSNK1A1-209	ENST00000606299	ATP2B2	Q01814	1243 aa		11.29	□□□□□ -0.6
CSNK1A1-209	ENST00000606299	CERKL	Q49MI3	558 aa	Predicted RBP	11.29	□□□□□ -0.6
CSNK1A1-209	ENST00000606299	XKR5	Q6UX68	686 aa		11.29	□□□□□ -0.6
CSNK1A1-209	ENST00000606299	ARHGAP27	Q6ZUM4	889 aa		11.29	□□□□□ -0.6
CSNK1A1-209	ENST00000606299	RASGRP2	Q7LDG7	609 aa		11.29	□□□□□ -0.6
CSNK1A1-209	ENST00000606299	EDEM1	Q92611	657 aa		11.29	□□□□□ -0.6
CSNK1A1-209	ENST00000606299	SYAP1	Q96A49	352 aa	Predicted RBP	11.29	□□□□□ -0.6
CSNK1A1-209	ENST00000606299	USP28	Q96RU2	1077 aa		11.29	□□□□□ -0.6
CSNK1A1-209	ENST00000606299	MAP3K14	Q99558	947 aa		11.29	□□□□□ -0.6
CSNK1A1-209	ENST00000606299	FTO	Q9C0B1	505 aa	Known RBP eCLIP	11.29	□□□□□ -0.6
CSNK1A1-209	ENST00000606299	DNAJC18	Q9H819	358 aa		11.29	□□□□□ -0.6
CSNK1A1-209	ENST00000606299	MTMR4	Q9NYA4	1195 aa		11.29	□□□□□ -0.6
CSNK1A1-209	ENST00000606299	VPS54	Q9P1Q0	977 aa		11.29	□□□□□ -0.6
CSNK1A1-209	ENST00000606299	MAD2L2	Q9UI95	211 aa		11.29	□□□□□ -0.6
CSNK1A1-209	ENST00000606299	UST	Q9Y2C2	406 aa		11.29	□□□□□ -0.6
CSNK1A1-209	ENST00000606299	CNTNAP1	P78357	1384 aa		11.28	□□□□□ -0.6
CSNK1A1-209	ENST00000606299	PARP14	Q460N5	1801 aa		11.28	□□□□□ -0.6
CSNK1A1-209	ENST00000606299	PHIP	Q8WWQ0	1821 aa		11.28	□□□□□ -0.6
CSNK1A1-209	ENST00000606299	IGKV6D-41	A0A0C4DH26	115 aa		11.28	□□□□□ -0.6
CSNK1A1-209	ENST00000606299	TTLL1	O95922	423 aa		11.28	□□□□□ -0.6
CSNK1A1-209	ENST00000606299	PDGFA	P04085	211 aa		11.28	□□□□□ -0.6
CSNK1A1-209	ENST00000606299	GOLGA8H	P0CJ92	632 aa		11.28	□□□□□ -0.6
CSNK1A1-209	ENST00000606299	MPST	P25325	297 aa		11.28	□□□□□ -0.6
CSNK1A1-209	ENST00000606299	EIF1AX	P47813	144 aa	Known RBP	11.28	□□□□□ -0.6
CSNK1A1-209	ENST00000606299	GMPS	P49915	693 aa	Predicted RBP	11.28	□□□□□ -0.6
CSNK1A1-209	ENST00000606299	PKN1	Q16512	942 aa		11.28	□□□□□ -0.6
CSNK1A1-209	ENST00000606299	ATL3	Q6DD88	541 aa		11.28	□□□□□ -0.6
CSNK1A1-209	ENST00000606299	FOXP4	Q8IVH2	680 aa	Predicted RBP	11.28	□□□□□ -0.6
CSNK1A1-209	ENST00000606299	TTC16	Q8NEE8	873 aa		11.28	□□□□□ -0.6
CSNK1A1-209	ENST00000606299	WFDC12	Q8WWY7	111 aa		11.28	□□□□□ -0.6
CSNK1A1-209	ENST00000606299	CCDC17	Q96LX7	622 aa		11.28	□□□□□ -0.6
CSNK1A1-209	ENST00000606299	CSRNP1	Q96S65	589 aa		11.28	□□□□□ -0.6
CSNK1A1-209	ENST00000606299	MYOZ2	Q9NPC6	264 aa		11.28	□□□□□ -0.6
CSNK1A1-209	ENST00000606299	TMEM63C	Q9P1W3	806 aa		11.28	□□□□□ -0.6
CSNK1A1-209	ENST00000606299	CLIP2	Q9UDT6	1046 aa		11.28	□□□□□ -0.6
CSNK1A1-209	ENST00000606299	PPME1	Q9Y570	386 aa		11.28	□□□□□ -0.6
CSNK1A1-209	ENST00000606299	ZNF541	Q9H0D2	1346 aa		11.28	□□□□□ -0.6
CSNK1A1-209	ENST00000606299	RBBP6	Q7Z6E9	1792 aa	Known RBP	11.28	□□□□□ -0.6
CSNK1A1-209	ENST00000606299	COL11A1	P12107	1806 aa	Predicted RBP	11.28	□□□□□ -0.6
CSNK1A1-209	ENST00000606299	SCG2	P13521	617 aa		11.27	□□□□□ -0.61
CSNK1A1-209	ENST00000606299	NPR3	P17342	541 aa		11.27	□□□□□ -0.61
CSNK1A1-209	ENST00000606299	RPS12	P25398	132 aa	Known RBP	11.27	□□□□□ -0.61
CSNK1A1-209	ENST00000606299	ATP11A	P98196	1134 aa		11.27	□□□□□ -0.61
CSNK1A1-209	ENST00000606299	STK38	Q15208	465 aa		11.27	□□□□□ -0.61

Retrieved 100 of 20,778 RNA–protein pairs in 42 ms